CU133788 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU133788
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 185349 .. 188988 (+)
Sequence length	197

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTCCAAAATGGCTTGATGAGCCTATTCTTATGATAAACATTGAATCCTTGAACATCTATATGATGCTTTGCATCCTTCACAAACCCAATGGTCACAACAGCAACCATTTGTATCTTTGTCCAACTGTCCCGGCCCCACTCAGCACCTGGCTGAGGTCTGTAAGTGACCTCTTGAGATATCATCATATCATTCACTA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU133788 vs. Swiss-Prot
Match: MORC4_ARATH (Protein MICRORCHIDIA 4 OS=Arabidopsis thaliana GN=MORC4 PE=3 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-18
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMM ++++TYRP+  A+         Q+ AVVTIGFVKDAKHH+DVQGFNVYHKNRLI
Sbjct: 434 VNDMMQTEKITYRPKEAADVS-------QLSAVVTIGFVKDAKHHVDVQGFNVYHKNRLI 491

Query: 61  KPFWR 120
           KPFWR
Sbjct: 494 KPFWR 491

Query: 121  180
           
Sbjct: 554  491

Query: 181  196
           
Sbjct: 614  491

[Close]

BLAST of CU133788 vs. Swiss-Prot
Match: MORC7_ARATH (Protein MICRORCHIDIA 7 OS=Arabidopsis thaliana GN=MORC7 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKI-QMVAVVTIGFVKDAKHHIDVQGFNVYHKNRL 60
           VNDMM ++++TYRPQ       +S+  +  M A+V IGFVKDAKHH+DVQGFNVYHKNRL
Sbjct: 443 VNDMMQTEQITYRPQS------ESYGVVTNMSAIVIIGFVKDAKHHVDVQGFNVYHKNRL 502

Query: 61  IKPFWR 120
           IKPFWR
Sbjct: 503 IKPFWR 502

Query: 121  180
           
Sbjct: 563  502

Query: 181  196
           
Sbjct: 623  502

[Close]

BLAST of CU133788 vs. Swiss-Prot
Match: MORC5_ARATH (Protein MICRORCHIDIA 5 OS=Arabidopsis thaliana GN=MORC5 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.2e-16
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           ++DMM  +E TY+P    EW        +MVA + +GFVKDA HHID+QGFNVYHKNRLI
Sbjct: 382 LDDMMKIEEKTYKPMRSPEWPDQE----EMVASLKLGFVKDAHHHIDIQGFNVYHKNRLI 441

Query: 61  KPFWR 120
           KPFWR
Sbjct: 442 KPFWR 442

Query: 121  180
           
Sbjct: 502  442

Query: 181  196
           
Sbjct: 562  442

[Close]

BLAST of CU133788 vs. Swiss-Prot
Match: MORC6_ARATH (Protein MICRORCHIDIA 6 OS=Arabidopsis thaliana GN=MORC6 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.9e-06
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = -3


Query: 1   NDMMISQEVTYRPQP-GAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           +D+M  Q + Y+PQ  G+E         + + V TIGF+K+A   +++ GF VYHKNRLI
Sbjct: 386 DDLMHPQYILYKPQAAGSE---------EALVVTTIGFLKEAPK-VNLHGFCVYHKNRLI 440

Query: 61  KPFWR 120
            PFW+
Sbjct: 446 MPFWQ 440

Query: 121  180
           
Sbjct: 506  440

Query: 181  193
           
Sbjct: 566  440

[Close]

BLAST of CU133788 vs. TrEMBL
Match: A0A0A0LTZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001330 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-22
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMMISQEVTYRPQPGA+          MVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 140 VNDMMISQEVTYRPQPGADGAGTVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 199

Query: 61  KPFWR 120
           KPFWR
Sbjct: 200 KPFWR 204

Query: 121  180
           
Sbjct: 260  204

Query: 181  196
           
Sbjct: 320  204

[Close]

BLAST of CU133788 vs. TrEMBL
Match: A0A059A6V7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02700 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-21
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMM+SQEVTYRPQPGA    D   K  M AVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 409 VNDMMLSQEVTYRPQPGA----DGVYKDTMAAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 468

Query: 61  KPFWR 120
           KPFWR
Sbjct: 469 KPFWR 469

Query: 121  180
           
Sbjct: 529  469

Query: 181  196
           
Sbjct: 589  469

[Close]

BLAST of CU133788 vs. TrEMBL
Match: B9I3W1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10460g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-21
Identity = 55/67 (82.09%), Postives = 57/67 (85.07%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKI--QMVAVVTIGFVKDAKHHIDVQGFNVYHKNR 60
           VNDMM+SQE+TYRPQPGA    DS  K   QM AVVTIGFVKDAKHHIDVQGFNVYHKNR
Sbjct: 436 VNDMMLSQEITYRPQPGA----DSVPKDTNQMTAVVTIGFVKDAKHHIDVQGFNVYHKNR 495

Query: 61  LIKPFWR 120
           LIKPFWR
Sbjct: 496 LIKPFWR 498

Query: 121  180
           
Sbjct: 556  498

Query: 181  196
           
Sbjct: 616  498

[Close]

BLAST of CU133788 vs. TrEMBL
Match: B9IFG1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11300g PE=4 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-20
Identity = 53/66 (80.30%), Postives = 57/66 (86.36%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEW-GRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRL 60
           VNDMM+SQEVTYRPQPGA+   +D+     M AVVTIGFVKDAKHHIDVQGFNVYHKNRL
Sbjct: 427 VNDMMLSQEVTYRPQPGADGVPKDT----NMTAVVTIGFVKDAKHHIDVQGFNVYHKNRL 486

Query: 61  IKPFWR 120
           IKPFWR
Sbjct: 487 IKPFWR 488

Query: 121  180
           
Sbjct: 547  488

Query: 181  196
           
Sbjct: 607  488

[Close]

BLAST of CU133788 vs. TrEMBL
Match: M5WAC4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025644mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-20
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEW-GRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRL 60
           VNDMM+SQ+VTYRPQPGA+   ++S     MVAVVTIGFVKDAKHHIDVQGFNVYHKNRL
Sbjct: 426 VNDMMMSQQVTYRPQPGADGIPKES----NMVAVVTIGFVKDAKHHIDVQGFNVYHKNRL 485

Query: 61  IKPFWR 120
           IKPFWR
Sbjct: 486 IKPFWR 487

Query: 121  180
           
Sbjct: 546  487

Query: 181  196
           
Sbjct: 606  487

[Close]

BLAST of CU133788 vs. NCBI nr
Match: gi|778655272|ref|XP_011650392.1| (PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-23
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMMISQEVTYRPQPGA+          MVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 434 VNDMMISQEVTYRPQPGADGAGTVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 493

Query: 61  KPFWR 120
           KPFWR
Sbjct: 494 KPFWR 498

Query: 121  180
           
Sbjct: 554  498

Query: 181  196
           
Sbjct: 614  498

[Close]

BLAST of CU133788 vs. NCBI nr
Match: gi|700208365|gb|KGN63461.1| (hypothetical protein Csa_1G001330 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-23
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMMISQEVTYRPQPGA+          MVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 140 VNDMMISQEVTYRPQPGADGAGTVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 199

Query: 61  KPFWR 120
           KPFWR
Sbjct: 200 KPFWR 204

Query: 121  180
           
Sbjct: 260  204

Query: 181  196
           
Sbjct: 320  204

[Close]

BLAST of CU133788 vs. NCBI nr
Match: gi|659128850|ref|XP_008464402.1| (PREDICTED: uncharacterized protein LOC103502300 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-23
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMM+SQEVTYRPQPGA+          MVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 434 VNDMMMSQEVTYRPQPGADGAGTVGKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 493

Query: 61  KPFWR 120
           KPFWR
Sbjct: 494 KPFWR 498

Query: 121  180
           
Sbjct: 554  498

Query: 181  196
           
Sbjct: 614  498

[Close]

BLAST of CU133788 vs. NCBI nr
Match: gi|629082650|gb|KCW49095.1| (hypothetical protein EUGRSUZ_K02700 [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMM+SQEVTYRPQPGA    D   K  M AVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 409 VNDMMLSQEVTYRPQPGA----DGVYKDTMAAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 468

Query: 61  KPFWR 120
           KPFWR
Sbjct: 469 KPFWR 469

Query: 121  180
           
Sbjct: 529  469

Query: 181  196
           
Sbjct: 589  469

[Close]

BLAST of CU133788 vs. NCBI nr
Match: gi|702497009|ref|XP_010037384.1| (PREDICTED: uncharacterized protein LOC104426135 [Eucalyptus grandis])

HSP 1 Score: 111.3 bits (277), Expect = 6.4e-22
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = -3


Query: 1   VNDMMISQEVTYRPQPGAEWGRDSWTKIQMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 60
           VNDMM+SQEVTYRPQPGA    D   K  M AVVTIGFVKDAKHHIDVQGFNVYHKNRLI
Sbjct: 409 VNDMMLSQEVTYRPQPGA----DGVYKDTMAAVVTIGFVKDAKHHIDVQGFNVYHKNRLI 468

Query: 61  KPFWR 120
           KPFWR
Sbjct: 469 KPFWR 469

Query: 121  180
           
Sbjct: 529  469

Query: 181  196
           
Sbjct: 589  469

The following BLAST results are available for this feature:

BLAST of CU133788 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MORC4_ARATH	1.1e-18	67.69	Protein MICRORCHIDIA 4 OS=Arabidopsis thaliana GN=MORC4 PE=3 SV=2	[more]
MORC7_ARATH	2.1e-17	65.15	Protein MICRORCHIDIA 7 OS=Arabidopsis thaliana GN=MORC7 PE=3 SV=1	[more]
MORC5_ARATH	5.2e-16	60.00	Protein MICRORCHIDIA 5 OS=Arabidopsis thaliana GN=MORC5 PE=3 SV=1	[more]
MORC6_ARATH	4.9e-06	43.08	Protein MICRORCHIDIA 6 OS=Arabidopsis thaliana GN=MORC6 PE=1 SV=1	[more]

BLAST of CU133788 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTZ4_CUCSA	2.0e-22	83.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001330 PE=4 SV=1	[more]
A0A059A6V7_EUCGR	2.2e-21	83.08	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02700 PE=4 SV=1	[more]
B9I3W1_POPTR	4.9e-21	82.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10460g PE=4 SV=1	[more]
B9IFG1_POPTR	1.4e-20	80.30	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11300g PE=4 SV=2	[more]
M5WAC4_PRUPE	1.9e-20	80.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025644mg PE=4 SV=1	[more]

BLAST of CU133788 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655272\|ref\|XP_011650392.1\|	4.4e-23	83.08	PREDICTED: uncharacterized protein LOC101222073 [Cucumis sativus]	[more]
gi\|700208365\|gb\|KGN63461.1\|	4.4e-23	83.08	hypothetical protein Csa_1G001330 [Cucumis sativus]	[more]
gi\|659128850\|ref\|XP_008464402.1\|	9.8e-23	81.54	PREDICTED: uncharacterized protein LOC103502300 [Cucumis melo]	[more]
gi\|629082650\|gb\|KCW49095.1\|	6.4e-22	83.08	hypothetical protein EUGRSUZ_K02700 [Eucalyptus grandis]	[more]
gi\|702497009\|ref\|XP_010037384.1\|	6.4e-22	83.08	PREDICTED: uncharacterized protein LOC104426135 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G001330	Csa1G001330	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OS228	FKNP3UI02OS228	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23336	ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.	coord: 2..66 score: 6.2
None	No IPR available	PANTHER	PTHR23336:SF7	HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN-RELATED	coord: 2..66 score: 6.2