CU133590 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU133590
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 3315583 .. 3315899 (+)
Sequence length	152

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAAAATGGATTGCTCCAAGTATCCACAGACTTTTGTCGCCAAAATAATCTTGTCTCTGGGCTTTGATTTGTGCCAGTTACCAATGTAAATGTCGGTCCTTCCCTGTGTCTCTTGTTTCATTGGAACTGGATATGCCTCTGCGGTATCTATAA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

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BLAST of CU133590 vs. Swiss-Prot
Match: TAS_ECOLI (Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.9e-07
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = -3


Query: 22  IDTAEAYPVPMKQETQGRTDIYIGNW-HKSKPRDKIILATKVCG 81
           ID AE YPVP + ETQG T+ Y+GNW  K   R+K+I+A+KV G
Sbjct: 47  IDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSG 90

Query: 82   141
           
Sbjct: 107  90

Query: 142  151
           
Sbjct: 167  90

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BLAST of CU133590 vs. Swiss-Prot
Match: TAS_SHIFL (Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.9e-07
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = -3


Query: 22  IDTAEAYPVPMKQETQGRTDIYIGNW-HKSKPRDKIILATKVCG 81
           ID AE YPVP + ETQG T+ Y+GNW  K   R+K+I+A+KV G
Sbjct: 47  IDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSG 90

Query: 82   141
           
Sbjct: 107  90

Query: 142  151
           
Sbjct: 167  90

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BLAST of CU133590 vs. TrEMBL
Match: A0A0A0LPX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031740 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.1e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           IDTAEAYPVPMKQETQGRTDIYIGNW KSKPRDKIILATKVCGYLEQSIF
Sbjct: 152 IDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYLEQSIF 201

Query: 61   120
           
Sbjct: 212  201

Query: 121  151
           
Sbjct: 272  201

[Close]

BLAST of CU133590 vs. TrEMBL
Match: A0A161ZJF3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024256 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.8e-16
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           +DTAEAYP+PMK+ETQGRTD+YIGNW KS+PRDK+ILATKVCGY E+S +
Sbjct: 108 LDTAEAYPIPMKKETQGRTDLYIGNWLKSQPRDKVILATKVCGYSERSSY 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  151
           
Sbjct: 228  157

[Close]

BLAST of CU133590 vs. TrEMBL
Match: V7BLE7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G274000g PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-15
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           +DTAEAYP+PMK+ETQG+TD+YIG+W KS+PRDKIILATKVCGY E+S +
Sbjct: 107 LDTAEAYPIPMKKETQGKTDLYIGSWLKSQPRDKIILATKVCGYSERSSY 156

Query: 61   120
           
Sbjct: 167  156

Query: 121  151
           
Sbjct: 227  156

[Close]

BLAST of CU133590 vs. TrEMBL
Match: A0A0L9TTK7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g007800 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-15
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           +DTAEAYP+PMK+ETQGRTD+YIG+W KS+PRDKIILATK+CGY E+S +
Sbjct: 108 LDTAEAYPIPMKKETQGRTDLYIGSWLKSQPRDKIILATKLCGYSERSSY 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  151
           
Sbjct: 228  157

[Close]

BLAST of CU133590 vs. TrEMBL
Match: A0A0S3SUU6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G360900 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-15
Identity = 38/50 (76.00%), Postives = 47/50 (94.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           +DTAEAYP+PMK+ETQGRTD+YIG+W KS+PRDKIILATK+CGY E+S +
Sbjct: 108 LDTAEAYPIPMKKETQGRTDLYIGSWLKSQPRDKIILATKLCGYSERSSY 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  151
           
Sbjct: 228  157

[Close]

BLAST of CU133590 vs. NCBI nr
Match: gi|449439219|ref|XP_004137384.1| (PREDICTED: aldo-keto reductase [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           IDTAEAYPVPMKQETQGRTDIYIGNW KSKPRDKIILATKVCGYLEQSIF
Sbjct: 90  IDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYLEQSIF 139

Query: 61   120
           
Sbjct: 150  139

Query: 121  151
           
Sbjct: 210  139

[Close]

BLAST of CU133590 vs. NCBI nr
Match: gi|700208854|gb|KGN63950.1| (hypothetical protein Csa_1G031740 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-20
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           IDTAEAYPVPMKQETQGRTDIYIGNW KSKPRDKIILATKVCGYLEQSIF
Sbjct: 152 IDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYLEQSIF 201

Query: 61   120
           
Sbjct: 212  201

Query: 121  151
           
Sbjct: 272  201

[Close]

BLAST of CU133590 vs. NCBI nr
Match: gi|659068729|ref|XP_008445879.1| (PREDICTED: homeobox-leucine zipper protein HDG11-like [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           IDTAEAYPVPMKQETQGRTDIYIGNW KSKPRDKIILATKVCGYLE+S +
Sbjct: 798 IDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYLERSTY 847

Query: 61   120
           
Sbjct: 858  847

Query: 121  151
           
Sbjct: 918  847

[Close]

BLAST of CU133590 vs. NCBI nr
Match: gi|1021029337|gb|KZM87122.1| (hypothetical protein DCAR_024256 [Daucus carota subsp. sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-16
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           +DTAEAYP+PMK+ETQGRTD+YIGNW KS+PRDK+ILATKVCGY E+S +
Sbjct: 108 LDTAEAYPIPMKKETQGRTDLYIGNWLKSQPRDKVILATKVCGYSERSSY 157

Query: 61   120
           
Sbjct: 168  157

Query: 121  151
           
Sbjct: 228  157

[Close]

BLAST of CU133590 vs. NCBI nr
Match: gi|743835765|ref|XP_010935909.1| (PREDICTED: aldo-keto reductase-like isoform X1 [Elaeis guineensis])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-16
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = -3


Query: 1   IDTAEAYPVPMKQETQGRTDIYIGNWHKSKPRDKIILATKVCGYLEQSIF 60
           +DTAEAYPVPM++ETQGRTD+YIG+W KSKPRDK+ILATKVCGY E+S +
Sbjct: 103 VDTAEAYPVPMRKETQGRTDLYIGSWMKSKPRDKVILATKVCGYSERSSY 152

Query: 61   120
           
Sbjct: 163  152

Query: 121  151
           
Sbjct: 223  152

The following BLAST results are available for this feature:

BLAST of CU133590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAS_ECOLI	9.9e-07	56.82	Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1	[more]
TAS_SHIFL	9.9e-07	56.82	Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1	[more]

BLAST of CU133590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPX0_CUCSA	7.1e-20	98.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031740 PE=4 SV=1	[more]
A0A161ZJF3_DAUCA	4.8e-16	78.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024256 PE=4 SV=1	[more]
V7BLE7_PHAVU	3.1e-15	76.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G274000g PE=4 SV=1	[more]
A0A0L9TTK7_PHAAN	3.1e-15	76.00	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g007800 PE=4 SV=1	[more]
A0A0S3SUU6_PHAAN	3.1e-15	76.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G360900 PE=...	[more]

BLAST of CU133590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439219\|ref\|XP_004137384.1\|	1.6e-20	98.00	PREDICTED: aldo-keto reductase [Cucumis sativus]	[more]
gi\|700208854\|gb\|KGN63950.1\|	1.6e-20	98.00	hypothetical protein Csa_1G031740 [Cucumis sativus]	[more]
gi\|659068729\|ref\|XP_008445879.1\|	3.9e-19	92.00	PREDICTED: homeobox-leucine zipper protein HDG11-like [Cucumis melo]	[more]
gi\|1021029337\|gb\|KZM87122.1\|	1.1e-16	78.00	hypothetical protein DCAR_024256 [Daucus carota subsp. sativus]	[more]
gi\|743835765\|ref\|XP_010935909.1\|	1.4e-16	78.00	PREDICTED: aldo-keto reductase-like isoform X1 [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR023210	NADP_OxRdtase_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G031740	Csa1G031740	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OP220	FKNP3UI02OP220	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023210	NADP-dependent oxidoreductase domain	GENE3D	G3DSA:3.20.20.100		coord: 2..46 score: 1.5
IPR023210	NADP-dependent oxidoreductase domain	PFAM	PF00248	Aldo_ket_red	coord: 2..42 score: 6.
IPR023210	NADP-dependent oxidoreductase domain	unknown	SSF51430	NAD(P)-linked oxidoreductase	coord: 2..45 score: 4.19