CU133395 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU133395
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 10256931 .. 10257556 (+)
Sequence length	244

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGAAATGGGAGGATTGTTGACATGAAATCTTCATACGTAAGGGTCGCTGAACCCGTGTAGTTCCTATCCTTCTCCTTGAATTTCTCAGTCAATCCCTTAACTATCATGCCACACTCGACAAAACTGTCAAAATTAAATTCCACTTGTTGGCCACTTCGATCATCGTATAGAGAAATTAGAAGTTGAAGGACTGAGGATGGAACTGCATAGCCAAGACCATAAAGTGCATCCCTCATTTCCAATG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU133395 vs. Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-21
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = -3


Query: 3   EMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDRN 62
           ++RDA Y LG  +P+SV QL++S +DD +G+ V+  FDSF+ECGMIVKGLTEKF+E D  
Sbjct: 145 QLRDAFYNLGCVLPTSVHQLIVSQFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPG 204

Query: 63  YTGSATLTYEDFMSTILPF 122
           YTG ATL+Y+ FM  ++PF
Sbjct: 205 YTGYATLSYDVFMLMVIPF 223

Query: 123  182
           
Sbjct: 265  223

Query: 183  240
           
Sbjct: 325  223

[Close]

BLAST of CU133395 vs. Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.1e-19
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = -3


Query: 3   EMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDRN 62
           E+RDAL  LG++V   VL LL+S +D   G+     +D+F+EC + VKGLTEKFKEKD  
Sbjct: 273 ELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTA 332

Query: 63  YTGSATLTYEDFMSTILPF 122
           Y+GSAT  YE FM T+LPF
Sbjct: 333 YSGSATFNYESFMLTVLPF 351

Query: 123  182
           
Sbjct: 393  351

Query: 183  240
           
Sbjct: 453  351

[Close]

BLAST of CU133395 vs. Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-17
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = -3


Query: 3   EMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDRN 62
           E+RDAL  LG++V   +L LL+S +D   G+     +D+F+EC + VKGLTEKFKEKD  
Sbjct: 254 ELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTA 313

Query: 63  YTGSATLTYEDFMSTILPF 122
            +GSA   YE+FM T+LPF
Sbjct: 314 LSGSAIFNYENFMLTVLPF 332

Query: 123  182
           
Sbjct: 374  332

Query: 183  240
           
Sbjct: 434  332

[Close]

BLAST of CU133395 vs. Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-06
Identity = 26/74 (35.14%), Postives = 41/74 (55.41%), Query Frame = -3


Query: 18  EMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDRN 77
           E+  AL  +GY +    +Q+++S Y  RS Q      D F++    ++ +TE F+EKD  
Sbjct: 204 ELHQALCQMGYQLSPQFVQIVMSRYAQRSAQP-GLQLDRFIQICTQLQSMTEAFREKDTG 263

Query: 78  YTGSATLTYEDFMS 137
             G+A L+YEDF++
Sbjct: 264 QIGTAKLSYEDFIT 276

Query: 138  197
           
Sbjct: 324  276

Query: 198  240
           
Sbjct: 384  276

[Close]

BLAST of CU133395 vs. TrEMBL
Match: A0A0A0LT26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G164670 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.1e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR
Sbjct: 167 LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 226

Query: 63  NYTGSATLTYEDFMSTILPF 122
           NYTGSATLTYEDFMSTILPF
Sbjct: 227 NYTGSATLTYEDFMSTILPF 246

Query: 123  182
           
Sbjct: 287  246

Query: 183  242
           
Sbjct: 347  246

[Close]

BLAST of CU133395 vs. TrEMBL
Match: F6HHF9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00450 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-28
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           +E++DALY LGYAVP SVLQ+LIS YDDRSG++VE NFDSFVECGMIVKGLTEKFKEKD 
Sbjct: 143 MELKDALYSLGYAVPPSVLQVLISKYDDRSGRRVELNFDSFVECGMIVKGLTEKFKEKDP 202

Query: 63  NYTGSATLTYEDFMSTILPF 122
            YTGSATLTY+ F+S I+PF
Sbjct: 203 RYTGSATLTYDAFLSMIIPF 222

Query: 123  182
           
Sbjct: 263  222

Query: 183  242
           
Sbjct: 323  222

[Close]

BLAST of CU133395 vs. TrEMBL
Match: A5AZN0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043433 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.7e-28
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           +E++DALY  GYAVP SVLQ+LIS YDDRSG++VE NFDSFVECGMIVKGLTEKFKEKD 
Sbjct: 143 MELKDALYSXGYAVPPSVLQVLISKYDDRSGRRVELNFDSFVECGMIVKGLTEKFKEKDP 202

Query: 63  NYTGSATLTYEDFMSTILPF 122
            YTGSATLTY+ F+S I+PF
Sbjct: 203 RYTGSATLTYDAFLSMIIPF 222

Query: 123  182
           
Sbjct: 263  222

Query: 183  242
           
Sbjct: 323  222

[Close]

BLAST of CU133395 vs. TrEMBL
Match: H9ADK2_9CARY (Calcium-dependent protein kinase (Fragment) OS=Haloxylon ammodendron GN=CDPK PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-27
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = -3


Query: 3   EMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDRN 62
           E+RDALY LGYAVP SVLQLLIS YD  +G++   NFDSFVECGM++KGLTEKFKEKD+ 
Sbjct: 136 ELRDALYSLGYAVPPSVLQLLISRYDGGNGRKAHLNFDSFVECGMVIKGLTEKFKEKDKR 195

Query: 63  YTGSATLTYEDFMSTILPF 122
           YTGSAT+TYEDFMS +LP+
Sbjct: 196 YTGSATITYEDFMSMVLPY 214

Query: 123  182
           
Sbjct: 256  214

Query: 183  240
           
Sbjct: 316  214

[Close]

BLAST of CU133395 vs. TrEMBL
Match: H2ER24_9CARY (EFh calcium-binding protein OS=Haloxylon ammodendron PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-27
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = -3


Query: 3   EMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDRN 62
           E+RDALY LGYAVP SVLQLLIS YD  +G++   NFDSFVECGM++KGLTEKFKEKD+ 
Sbjct: 160 ELRDALYSLGYAVPPSVLQLLISRYDGGNGRKAHLNFDSFVECGMVIKGLTEKFKEKDKR 219

Query: 63  YTGSATLTYEDFMSTILPF 122
           YTGSAT+TYEDFMS +LP+
Sbjct: 220 YTGSATITYEDFMSMVLPY 238

Query: 123  182
           
Sbjct: 280  238

Query: 183  240
           
Sbjct: 340  238

[Close]

BLAST of CU133395 vs. NCBI nr
Match: gi|449443448|ref|XP_004139489.1| (PREDICTED: probable calcium-binding protein CML48 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 7.8e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR
Sbjct: 167 LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 226

Query: 63  NYTGSATLTYEDFMSTILPF 122
           NYTGSATLTYEDFMSTILPF
Sbjct: 227 NYTGSATLTYEDFMSTILPF 246

Query: 123  182
           
Sbjct: 287  246

Query: 183  242
           
Sbjct: 347  246

[Close]

BLAST of CU133395 vs. NCBI nr
Match: gi|659071684|ref|XP_008461406.1| (PREDICTED: probable calcium-binding protein CML48 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 7.8e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR
Sbjct: 169 LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 228

Query: 63  NYTGSATLTYEDFMSTILPF 122
           NYTGSATLTYEDFMSTILPF
Sbjct: 229 NYTGSATLTYEDFMSTILPF 248

Query: 123  182
           
Sbjct: 289  248

Query: 183  242
           
Sbjct: 349  248

[Close]

BLAST of CU133395 vs. NCBI nr
Match: gi|296084908|emb|CBI28317.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-29
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           +E++DALY LGYAVP SVLQ+LIS YDDRSG++VE NFDSFVECGMIVKGLTEKFKEKD 
Sbjct: 80  MELKDALYSLGYAVPPSVLQVLISKYDDRSGRRVELNFDSFVECGMIVKGLTEKFKEKDP 139

Query: 63  NYTGSATLTYEDFMSTILPF 122
            YTGSATLTY+ F+S I+PF
Sbjct: 140 RYTGSATLTYDAFLSMIIPF 159

Query: 123  182
           
Sbjct: 200  159

Query: 183  242
           
Sbjct: 260  159

[Close]

BLAST of CU133395 vs. NCBI nr
Match: gi|225464942|ref|XP_002275521.1| (PREDICTED: probable calcium-binding protein CML48 [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-29
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           +E++DALY LGYAVP SVLQ+LIS YDDRSG++VE NFDSFVECGMIVKGLTEKFKEKD 
Sbjct: 143 MELKDALYSLGYAVPPSVLQVLISKYDDRSGRRVELNFDSFVECGMIVKGLTEKFKEKDP 202

Query: 63  NYTGSATLTYEDFMSTILPF 122
            YTGSATLTY+ F+S I+PF
Sbjct: 203 RYTGSATLTYDAFLSMIIPF 222

Query: 123  182
           
Sbjct: 263  222

Query: 183  242
           
Sbjct: 323  222

[Close]

BLAST of CU133395 vs. NCBI nr
Match: gi|147846772|emb|CAN80623.1| (hypothetical protein VITISV_043433 [Vitis vinifera])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = -3


Query: 3   LEMRDALYGLGYAVPSSVLQLLISLYDDRSGQQVEFNFDSFVECGMIVKGLTEKFKEKDR 62
           +E++DALY  GYAVP SVLQ+LIS YDDRSG++VE NFDSFVECGMIVKGLTEKFKEKD 
Sbjct: 143 MELKDALYSXGYAVPPSVLQVLISKYDDRSGRRVELNFDSFVECGMIVKGLTEKFKEKDP 202

Query: 63  NYTGSATLTYEDFMSTILPF 122
            YTGSATLTY+ F+S I+PF
Sbjct: 203 RYTGSATLTYDAFLSMIIPF 222

Query: 123  182
           
Sbjct: 263  222

Query: 183  242
           
Sbjct: 323  222

The following BLAST results are available for this feature:

BLAST of CU133395 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CML48_ARATH	3.9e-21	58.23	Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=...	[more]
CML50_ARATH	8.1e-19	55.70	Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=...	[more]
CML49_ARATH	3.4e-17	51.90	Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=...	[more]
PEF1_XENLA	4.6e-06	35.14	Peflin OS=Xenopus laevis GN=pef1 PE=1 SV=1	[more]

BLAST of CU133395 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT26_CUCSA	2.1e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G164670 PE=4 SV=1	[more]
F6HHF9_VITVI	1.8e-28	78.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00450 PE=4 SV=...	[more]
A5AZN0_VITVI	6.7e-28	77.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043433 PE=4 SV=1	[more]
H9ADK2_9CARY	2.5e-27	74.68	Calcium-dependent protein kinase (Fragment) OS=Haloxylon ammodendron GN=CDPK PE=...	[more]
H2ER24_9CARY	2.5e-27	74.68	EFh calcium-binding protein OS=Haloxylon ammodendron PE=2 SV=1	[more]

BLAST of CU133395 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443448\|ref\|XP_004139489.1\|	7.8e-38	100.00	PREDICTED: probable calcium-binding protein CML48 [Cucumis sativus]	[more]
gi\|659071684\|ref\|XP_008461406.1\|	7.8e-38	100.00	PREDICTED: probable calcium-binding protein CML48 [Cucumis melo]	[more]
gi\|296084908\|emb\|CBI28317.3\|	6.6e-29	78.75	unnamed protein product [Vitis vinifera]	[more]
gi\|225464942\|ref\|XP_002275521.1\|	6.6e-29	78.75	PREDICTED: probable calcium-binding protein CML48 [Vitis vinifera]	[more]
gi\|147846772\|emb\|CAN80623.1\|	2.5e-28	77.50	hypothetical protein VITISV_043433 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G164670	Csa1G164670	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OM80H	FKNP3UI02OM80H	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 3..78 score: 1.9
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 3..78 score: 1.09
None	No IPR available	PANTHER	PTHR10183	CALPAIN	coord: 2..82 score: 8.1
None	No IPR available	PANTHER	PTHR10183:SF299	SUBFAMILY NOT NAMED	coord: 2..82 score: 8.1