CU133270 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU133270
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Crooked neck family protein
Location	Chr1 : 9614044 .. 9614237 (-)
Sequence length	193

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATGGAAGAAATGTTAGGTAATGTTGCTGGTGCAAGGCAGATTTTTGAGAGATGGATGGGCTGGATGCCAGACCAGCAAGGTTGGCTCTCTTACATCAAGTTTGAGTTGAGATACAACGAGGTTGAACGTGCCCGAGGCATATTTGAGCGCTTCGTTCAATGCCACCCCAAAGTTGGAGCATGGATACGATTTG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU133270 vs. Swiss-Prot
Match: CRNL1_RAT (Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.3e-22
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQ+FERWM W P++Q W SYI FELRY EVERAR I+ERFV  HP V  
Sbjct: 158 MEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN 217

Query: 61  WIRF 120
           WI++
Sbjct: 218 WIKY 221

Query: 121  180
           
Sbjct: 278  221

Query: 181  193
           
Sbjct: 338  221

HSP 2 Score: 42.0 bits (97), Expect = 2.9e-03
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGW----MPDQQGWLSYIKFELRYNEVERARGIFERFVQCHP 60
           +E +LG++  AR I+E  +      MP+   W SYI FE+   E ER R ++ + +Q   
Sbjct: 488 LETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEETERTRNLYRQLLQRTQ 547

Query: 61  KVGAWIRF 120
            V  WI F
Sbjct: 548 HVKVWISF 554

Query: 121  180
           
Sbjct: 608  554

Query: 181  193
           
Sbjct: 668  554

HSP 3 Score: 35.4 bits (80), Expect = 2.7e-01
Identity = 18/59 (30.51%), Postives = 32/59 (54.24%), Query Frame = 1


Query: 19  NVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPK-VGAWIRF 78
           N+  AR+     +G  P  + +  YI+ EL+  E +R R ++E+F++  P+   +WI+F
Sbjct: 427 NLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF 485

Query: 79   138
           
Sbjct: 487  485

Query: 139  193
           
Sbjct: 547  485

[Close]

BLAST of CU133270 vs. Swiss-Prot
Match: CRNL1_MOUSE (Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.3e-22
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQ+FERWM W P++Q W SYI FELRY EVERAR I+ERFV  HP V  
Sbjct: 158 MEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN 217

Query: 61  WIRF 120
           WI++
Sbjct: 218 WIKY 221

Query: 121  180
           
Sbjct: 278  221

Query: 181  193
           
Sbjct: 338  221

HSP 2 Score: 42.0 bits (97), Expect = 2.9e-03
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGW----MPDQQGWLSYIKFELRYNEVERARGIFERFVQCHP 60
           +E +LG++  AR I+E  +      MP+   W SYI FE+   E ER R ++ + +Q   
Sbjct: 488 LETILGDIERARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEETERTRNLYRQLLQRTQ 547

Query: 61  KVGAWIRF 120
            V  WI F
Sbjct: 548 HVKVWISF 554

Query: 121  180
           
Sbjct: 608  554

Query: 181  193
           
Sbjct: 668  554

HSP 3 Score: 35.4 bits (80), Expect = 2.7e-01
Identity = 18/59 (30.51%), Postives = 32/59 (54.24%), Query Frame = 1


Query: 19  NVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPK-VGAWIRF 78
           N+  AR+     +G  P  + +  YI+ EL+  E +R R ++E+F++  P+   +WI+F
Sbjct: 427 NLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF 485

Query: 79   138
           
Sbjct: 487  485

Query: 139  193
           
Sbjct: 547  485

[Close]

BLAST of CU133270 vs. Swiss-Prot
Match: CRNL1_HUMAN (Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4)

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-21
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQ+FERWM W P++Q W SYI FELRY EV+RAR I+ERFV  HP V  
Sbjct: 319 MEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN 378

Query: 61  WIRF 120
           WI++
Sbjct: 379 WIKY 382

Query: 121  180
           
Sbjct: 439  382

Query: 181  193
           
Sbjct: 499  382

HSP 2 Score: 43.1 bits (100), Expect = 1.3e-03
Identity = 25/68 (36.76%), Postives = 34/68 (50.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGW----MPDQQGWLSYIKFELRYNEVERARGIFERFVQCHP 60
           +E +LG++  AR I+E  +      MP+   W SYI FE+   E ER R ++ R +Q   
Sbjct: 649 LETILGDIDRARAIYELAISQPRLDMPEVL-WKSYIDFEIEQEETERTRNLYRRLLQRTQ 708

Query: 61  KVGAWIRF 120
            V  WI F
Sbjct: 709 HVKVWISF 715

Query: 121  180
           
Sbjct: 769  715

Query: 181  193
           
Sbjct: 829  715

HSP 3 Score: 35.0 bits (79), Expect = 3.6e-01
Identity = 18/59 (30.51%), Postives = 33/59 (55.93%), Query Frame = 1


Query: 19  NVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPK-VGAWIRF 78
           N++ AR+     +G  P  + +  YI+ EL+  E +R R ++E+F++  P+   +WI+F
Sbjct: 588 NLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKF 646

Query: 79   138
           
Sbjct: 648  646

Query: 139  193
           
Sbjct: 708  646

[Close]

BLAST of CU133270 vs. Swiss-Prot
Match: CRN_DROME (Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-20
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEML NVAGARQ+FERWM W P++Q W +Y+ FELRY E++RAR I+ERFV  HP V  
Sbjct: 153 MEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKN 212

Query: 61  WIRF 120
           WI+F
Sbjct: 213 WIKF 216

Query: 121  180
           
Sbjct: 273  216

Query: 181  193
           
Sbjct: 333  216

HSP 2 Score: 38.9 bits (89), Expect = 2.5e-02
Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGW----MPDQQGWLSYIKFELRYNEVERARGIFERFVQCHP 60
           +E +LG+   AR IFE  +      MP+   W +YI FE+   E E AR ++ER ++   
Sbjct: 483 LENLLGDTDRARAIFELAVQQPRLDMPELL-WKAYIDFEVALGETELARQLYERLLERTQ 542

Query: 61  KVGAWIRF 120
            V  W+ F
Sbjct: 543 HVKVWMSF 549

Query: 121  180
           
Sbjct: 603  549

Query: 181  193
           
Sbjct: 663  549

HSP 3 Score: 33.9 bits (76), Expect = 8.0e-01
Identity = 21/62 (33.87%), Postives = 30/62 (48.39%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPD-QQGWLSYIKFELRYNEVERARGIFERFVQCHPKVG 60
           ME     V  AR +++R +  MP   Q W  Y   E     V  AR +FER+++  P+  
Sbjct: 119 MEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQ 178

Query: 61  AW 120
           AW
Sbjct: 179 AW 180

Query: 121  180
           
Sbjct: 239  180

Query: 181  184
           
Sbjct: 299  180

HSP 4 Score: 31.6 bits (70), Expect = 4.0e+00
Identity = 16/55 (29.09%), Postives = 29/55 (52.73%), Query Frame = 1


Query: 31  ARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPK-VGAWIRF 90
           AR+     +G  P  + +  YI  E++  E ER R ++E+F++  P+    W++F
Sbjct: 426 ARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKF 480

Query: 91   150
           
Sbjct: 486  480

Query: 151  193
           
Sbjct: 546  480

HSP 5 Score: 29.6 bits (65), Expect = 1.5e+01
Identity = 15/39 (38.46%), Postives = 22/39 (56.41%), Query Frame = 1


Query: 34  RQIFERWMGWMPDQQG-----WLSYIKFELRYNEVERAR 93
           RQI++  +  +P +Q      WL Y +FE+R  E++RAR
Sbjct: 389 RQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRAR 427

Query: 94   136
           
Sbjct: 449  427

[Close]

BLAST of CU133270 vs. Swiss-Prot
Match: CLF1_SCHPO (Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf4 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-19
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGN+ G RQ+FERW+ W PD+  W+SYI+ E RY+E ERARGI+ERFV  HP+V  
Sbjct: 147 MEEMLGNITGCRQVFERWLKWEPDENCWMSYIRMERRYHENERARGIYERFVVVHPEVTN 206

Query: 61  WIRF 120
           W+R+
Sbjct: 207 WLRW 210

Query: 121  180
           
Sbjct: 267  210

Query: 181  193
           
Sbjct: 327  210

HSP 2 Score: 35.0 bits (79), Expect = 3.6e-01
Identity = 19/60 (31.67%), Postives = 32/60 (53.33%), Query Frame = 1


Query: 4   EEMLGNVAGARQIFERWMGWMP----DQQGWLSYIKFELRYNEVERARGIFERFVQCHPK 63
           EE  GN A  RQ++   +  +     +++ ++++ KFE+R  E ERAR IF+  +   P+
Sbjct: 214 EEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPR 273

Query: 64   123
           
Sbjct: 274  273

Query: 124  172
           
Sbjct: 334  273

HSP 3 Score: 34.3 bits (77), Expect = 6.1e-01
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 1


Query: 82  WLSYIKFELRYNEVERARGIFERFVQCHPKVGAWIRF 141
           W +YI FE    E  +AR I+++ ++  P V  WI F
Sbjct: 507 WKAYIDFEFEEMEYGKARSIYQQLLRTAPHVKVWISF 543

Query: 142  193
           
Sbjct: 567  543

HSP 4 Score: 32.7 bits (73), Expect = 1.8e+00
Identity = 20/61 (32.79%), Postives = 33/61 (54.10%), Query Frame = 1


Query: 25  AGARQIFERWMG----WMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVG-AWIR 84
           A AR +FER +     ++P    WL YI+ E++   +  AR +F+R V   P+V   W +
Sbjct: 87  ARARSVFERALDVDSTYIPL---WLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYK 144

Query: 85  F 144
           +
Sbjct: 147 Y 144

Query: 145  193
           
Sbjct: 207  144

[Close]

BLAST of CU133270 vs. TrEMBL
Match: A0A0A0LSI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144280 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.3e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA
Sbjct: 168 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 227

Query: 61  WIRF 120
           WIRF
Sbjct: 228 WIRF 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. TrEMBL
Match: A0A0A0LSI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144280 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-08
Identity = 39/88 (44.32%), Postives = 44/88 (50.00%), Query Frame = 1


Query: 31  ARQIFERWMGWMPD-QQGWLSYIK---------------------------------FEL 90
           AR +++R +  +P   Q W  YI                                  FEL
Sbjct: 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFEL 203

Query: 91  RYNEVERARGIFERFVQCHPKVGAWIRF 150
           RYNEVERARGIFERFVQCHPKVGAWIRF
Sbjct: 204 RYNEVERARGIFERFVQCHPKVGAWIRF 231

Query: 151  193
           
Sbjct: 264  231

HSP 2 Score: 139.4 bits (350), Expect = 1.5e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGN+AGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKV A
Sbjct: 168 MEEMLGNIAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVSA 227

Query: 61  WIRF 120
           WIRF
Sbjct: 228 WIRF 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. TrEMBL
Match: B9GX70_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13700g PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-07
Identity = 38/88 (43.18%), Postives = 43/88 (48.86%), Query Frame = 1


Query: 31  ARQIFERWMGWMPD-QQGWLSYIK---------------------------------FEL 90
           AR +++R +  +P   Q W  YI                                  FEL
Sbjct: 144 ARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNIAGARQIFERWMGWMPDQQGWLSYIKFEL 203

Query: 91  RYNEVERARGIFERFVQCHPKVGAWIRF 150
           RYNEVERARGIFERFVQCHPKV AWIRF
Sbjct: 204 RYNEVERARGIFERFVQCHPKVSAWIRF 231

Query: 151  193
           
Sbjct: 264  231

HSP 2 Score: 34.7 bits (78), Expect = 5.2e+01
Identity = 22/66 (33.33%), Postives = 31/66 (46.97%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGW----MPDQQGWLSYIKFELRYNEVERARGIFERFVQCHP 60
           +E  L     AR IFE  +      MP+   W +YI FE+   E +R R +FER +    
Sbjct: 498 LERSLSETERARSIFELAIAQPALDMPELL-WKAYIDFEISEGEYDRTRELFERLLDRTK 557

Query: 61  KVGAWI 120
            +  WI
Sbjct: 558 HLKVWI 562

Query: 121  180
           
Sbjct: 618  562

Query: 181  187
           
Sbjct: 678  562

HSP 3 Score: 138.7 bits (348), Expect = 2.6e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKV A
Sbjct: 168 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVSA 227

Query: 61  WIRF 120
           WIR+
Sbjct: 228 WIRY 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. TrEMBL
Match: B9GL87_POPTR (Crooked neck family protein OS=Populus trichocarpa GN=POPTR_0001s10340g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-07
Identity = 37/88 (42.05%), Postives = 43/88 (48.86%), Query Frame = 1


Query: 31  ARQIFERWMGWMPD-QQGWLSYIK---------------------------------FEL 90
           AR +++R +  +P   Q W  YI                                  FEL
Sbjct: 144 ARNVWDRAVTLLPRIDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFEL 203

Query: 91  RYNEVERARGIFERFVQCHPKVGAWIRF 150
           RYNEVERARGIFERFVQCHPKV AWIR+
Sbjct: 204 RYNEVERARGIFERFVQCHPKVSAWIRY 231

Query: 151  193
           
Sbjct: 264  231

HSP 2 Score: 32.0 bits (71), Expect = 3.4e+02
Identity = 20/66 (30.30%), Postives = 31/66 (46.97%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGW----MPDQQGWLSYIKFELRYNEVERARGIFERFVQCHP 60
           +E  L     AR IFE  +      MP+   W +YI FE+   E +R R +++R +    
Sbjct: 498 LERSLSETERARSIFELAIAQPALDMPELL-WKAYIDFEISEGEYDRTRELYKRLLDRTK 557

Query: 61  KVGAWI 120
            +  WI
Sbjct: 558 HLKVWI 562

Query: 121  180
           
Sbjct: 618  562

Query: 181  187
           
Sbjct: 678  562

HSP 3 Score: 138.3 bits (347), Expect = 3.3e-30
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNE+ERARGIFERFVQCHPKV A
Sbjct: 134 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEIERARGIFERFVQCHPKVSA 193

Query: 61  WIRF 120
           WIR+
Sbjct: 194 WIRY 197

Query: 121  180
           
Sbjct: 254  197

Query: 181  193
           
Sbjct: 314  197

[Close]

BLAST of CU133270 vs. TrEMBL
Match: A0A067K0N1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22522 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-07
Identity = 37/88 (42.05%), Postives = 43/88 (48.86%), Query Frame = 1


Query: 31  ARQIFERWMGWMPD-QQGWLSYIK---------------------------------FEL 90
           AR ++ER +  +P   Q W  YI                                  FEL
Sbjct: 110 ARSVWERAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFEL 169

Query: 91  RYNEVERARGIFERFVQCHPKVGAWIRF 150
           RYNE+ERARGIFERFVQCHPKV AWIR+
Sbjct: 170 RYNEIERARGIFERFVQCHPKVSAWIRY 197

Query: 151  193
           
Sbjct: 230  197

HSP 2 Score: 137.1 bits (344), Expect = 7.4e-30
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNE+ERAR IFERFVQCHPKV A
Sbjct: 167 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEIERARAIFERFVQCHPKVSA 226

Query: 61  WIRF 120
           WIRF
Sbjct: 227 WIRF 230

Query: 121  180
           
Sbjct: 287  230

Query: 181  193
           
Sbjct: 347  230

[Close]

BLAST of CU133270 vs. NCBI nr
Match: gi|778659307|ref|XP_011654169.1| (PREDICTED: crooked neck-like protein 1 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA
Sbjct: 168 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 227

Query: 61  WIRF 120
           WIRF
Sbjct: 228 WIRF 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. NCBI nr
Match: gi|700209779|gb|KGN64875.1| (hypothetical protein Csa_1G144280 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA
Sbjct: 168 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 227

Query: 61  WIRF 120
           WIRF
Sbjct: 228 WIRF 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. NCBI nr
Match: gi|659071855|ref|XP_008462238.1| (PREDICTED: crooked neck-like protein 1 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA
Sbjct: 168 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 227

Query: 61  WIRF 120
           WIRF
Sbjct: 228 WIRF 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. NCBI nr
Match: gi|224072126|ref|XP_002303629.1| (hypothetical protein POPTR_0003s13700g [Populus trichocarpa])

HSP 1 Score: 141.0 bits (354), Expect = 7.4e-31
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGN+AGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKV A
Sbjct: 168 MEEMLGNIAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVSA 227

Query: 61  WIRF 120
           WIRF
Sbjct: 228 WIRF 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

[Close]

BLAST of CU133270 vs. NCBI nr
Match: gi|224058393|ref|XP_002299492.1| (crooked neck family protein [Populus trichocarpa])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 1   MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVGA 60
           MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKV A
Sbjct: 168 MEEMLGNVAGARQIFERWMGWMPDQQGWLSYIKFELRYNEVERARGIFERFVQCHPKVSA 227

Query: 61  WIRF 120
           WIR+
Sbjct: 228 WIRY 231

Query: 121  180
           
Sbjct: 288  231

Query: 181  193
           
Sbjct: 348  231

The following BLAST results are available for this feature:

BLAST of CU133270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRNL1_RAT	6.3e-22	71.88	Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1	[more]
CRNL1_MOUSE	6.3e-22	71.88	Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=1 SV=1	[more]
CRNL1_HUMAN	1.4e-21	70.31	Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4	[more]
CRN_DROME	1.2e-20	65.63	Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2	[more]
CLF1_SCHPO	1.3e-19	62.50	Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of CU133270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSI4_CUCSA	2.3e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144280 PE=4 SV=1	[more]
A0A0A0LSI4_CUCSA	3.6e-08	44.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144280 PE=4 SV=1	[more]
B9GX70_POPTR	1.8e-07	43.18	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13700g PE=4 SV=1	[more]
B9GL87_POPTR	4.0e-07	42.05	Crooked neck family protein OS=Populus trichocarpa GN=POPTR_0001s10340g PE=4 SV=...	[more]
A0A067K0N1_JATCU	2.3e-07	42.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22522 PE=4 SV=1	[more]

BLAST of CU133270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659307\|ref\|XP_011654169.1\|	1.1e-31	100.00	PREDICTED: crooked neck-like protein 1 [Cucumis sativus]	[more]
gi\|700209779\|gb\|KGN64875.1\|	1.1e-31	100.00	hypothetical protein Csa_1G144280 [Cucumis sativus]	[more]
gi\|659071855\|ref\|XP_008462238.1\|	1.1e-31	100.00	PREDICTED: crooked neck-like protein 1 [Cucumis melo]	[more]
gi\|224072126\|ref\|XP_002303629.1\|	7.4e-31	96.88	hypothetical protein POPTR_0003s13700g [Populus trichocarpa]	[more]
gi\|224058393\|ref\|XP_002299492.1\|	1.3e-30	96.88	crooked neck family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003107	HAT
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G144280	Csa1G144280	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OKEW6	FKNP3UI02OKEW6	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	PFAM	PF02184	HAT	coord: 40..64 score: 2.6
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 6..37 score: 7.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 4..57 score: 3.34
None	No IPR available	PANTHER	PTHR11246	PRE-MRNA SPLICING FACTOR	coord: 1..64 score: 8.1
None	No IPR available	PANTHER	PTHR11246:SF14	SUBFAMILY NOT NAMED	coord: 1..64 score: 8.1