CU133177 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU133177
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
LocationChr4 : 23069107 .. 23069207 (+)
Sequence length115
The following sequences are available for this feature:

transcribed_cluster sequence

ACGGCCCGGGGGATTTTTGATCAATGCCTGACCGTATTACGAGCGTATGTTGAGCAACAGATGTGAACCTGACATGAACACCTATTCGAATTTGATTACTGGCTTTCTCAAGGCC
Library categoryESTs
fruit (8DPP) library1
BLAST of CU133177 vs. TrEMBL
Match: A0A0A0L3E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663730 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 2

Query: 35  YYERMLSNRCEPDMNTYSNLITGFLKA 94
           YYERMLSNRCEPDMNTYSNLITGFLKA
Sbjct: 374 YYERMLSNRCEPDMNTYSNLITGFLKA 400

Query: 95  116
           
Sbjct: 434 400

BLAST of CU133177 vs. NCBI nr
Match: gi|778697198|ref|XP_011654277.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 2

Query: 35  YYERMLSNRCEPDMNTYSNLITGFLKA 94
           YYERMLSNRCEPDMNTYSNLITGFLKA
Sbjct: 374 YYERMLSNRCEPDMNTYSNLITGFLKA 400

Query: 95  116
           
Sbjct: 434 400

BLAST of CU133177 vs. NCBI nr
Match: gi|659104798|ref|XP_008452985.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-07
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 2

Query: 35  YYERMLSNRCEPDMNTYSNLITGFLKA 94
           YY+RMLSNRCEPDMNTYSNLITGFLKA
Sbjct: 374 YYKRMLSNRCEPDMNTYSNLITGFLKA 400

Query: 95  116
           
Sbjct: 434 400

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L3E0_CUCSA4.0e-07100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663730 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778697198|ref|XP_011654277.1|1.2e-07100.00PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Cucum... [more]
gi|659104798|ref|XP_008452985.1|3.4e-0796.30PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Cucum... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G663730Csa4G663730gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02OJ497FKNP3UI02OJ497EST