CU132700 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU132700
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 18092162 .. 18092311 (+)
Sequence length	158

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGTCACCACTCGGCTTCGCTTGATTAGCAATCAACTAGATAACCATGGAATCCATTCAAGCTTGATCAAAATGAAGGCAATGGCAGCAACTTCGAACCGTCCCCTTCAGATTTCCCCATGGACTTGCTGTTCCTCATTTCCCCGCGAAAT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU132700 vs. NCBI nr
Match: gi|778729487|ref|XP_004141740.2| (PREDICTED: uncharacterized protein LOC101213828 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-06
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1


Query: 79  MKAMAATSNRPLQISPWTCCSSFPRE 138
           MKAMAATSNRPLQISPWTCCSSFPR+
Sbjct: 1   MKAMAATSNRPLQISPWTCCSSFPRQ 26

Query: 139  157
           
Sbjct: 61   26

The following BLAST results are available for this feature:

BLAST of CU132700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778729487\|ref\|XP_004141740.2\|	3.9e-06	96.15	PREDICTED: uncharacterized protein LOC101213828 [Cucumis sativus]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G447880	Csa7G447880	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OC8CP	FKNP3UI02OC8CP	EST