CU132643 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU132643
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 502468 .. 502663 (-)
Sequence length	195

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATCTAATGGGATCAGTGCAACCCTTTCCAGCAGATTGTTTGTGGCCTTTCCCTCCTCCTTTCTCCAAATACTGCTGATGGTACTCTTCTGCCCTATAGAATCTCTTGGCTGGAAGAATCTCTGTTACAACTTCTTTGTCTTTCAACTCCAACTTCTTGGCTTCTTTGGATTCATGAGCTAAACGAGCTTGTGTCT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU132643 vs. Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-14
Identity = 35/39 (89.74%), Postives = 34/39 (87.18%), Query Frame = -3


Query: 2   ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTDPIR 61
           ILPAKRFYRAEEYHQQYLEKGGG+G KQSA KGC DPIR
Sbjct: 155 ILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIR 193

Query: 62   119
           
Sbjct: 215  193

[Close]

BLAST of CU132643 vs. Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = -3


Query: 2   ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTDPIR 61
           ILPAKRFYRAEEYHQQYLEKGGG G+KQSA KGC DPI+
Sbjct: 150 ILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIK 188

Query: 62   119
           
Sbjct: 210  188

[Close]

BLAST of CU132643 vs. Swiss-Prot
Match: MSRA4_ORYSJ (Peptide methionine sulfoxide reductase A4, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRA4 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-11
Identity = 32/39 (82.05%), Postives = 31/39 (79.49%), Query Frame = -3


Query: 2   ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTDPIR 61
           ILPAKRFYRAEEYHQQYL KGG  G +QSA KGC DPIR
Sbjct: 222 ILPAKRFYRAEEYHQQYLAKGGRFGFRQSAEKGCNDPIR 260

Query: 62   119
           
Sbjct: 282  260

[Close]

BLAST of CU132643 vs. Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = -3


Query: 2   ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTDPIR 61
           ILPAK+FYRAEEYHQQYL KGG  G +QS  KGC DPIR
Sbjct: 218 ILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIR 256

Query: 62   119
           
Sbjct: 278  256

[Close]

BLAST of CU132643 vs. Swiss-Prot
Match: MSRA1_ARATH (Peptide methionine sulfoxide reductase A1 OS=Arabidopsis thaliana GN=MSRA1 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-10
Identity = 30/39 (76.92%), Postives = 30/39 (76.92%), Query Frame = -3


Query: 2   ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTDPIR 61
           ILPAK+FYRAEE+HQQYL KGG  G KQS  KGC DPIR
Sbjct: 161 ILPAKKFYRAEEHHQQYLSKGGRFGLKQSTEKGCNDPIR 199

Query: 62   119
           
Sbjct: 221  199

[Close]

BLAST of CU132643 vs. TrEMBL
Match: A0A0A0LRY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002810 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.2e-17
Identity = 46/64 (71.88%), Postives = 46/64 (71.88%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLAH                  ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT
Sbjct: 128 TQARLAHESKEAKKLELKDKEVVTEILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 187

Query: 62  DPIR 121
           DPIR
Sbjct: 188 DPIR 191

Query: 122  181
           
Sbjct: 248  191

Query: 182  194
           
Sbjct: 308  191

[Close]

BLAST of CU132643 vs. TrEMBL
Match: H2ESC5_MORAL (Methionine sulfoxide reductase OS=Morus alba var. multicaulis GN=MMSR PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-13
Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLA                   ILPAKRFYRAEEYHQQYLEKGGG+G KQSA KGCT
Sbjct: 128 TQARLAQESKEAKQLELKDKKIVTEILPAKRFYRAEEYHQQYLEKGGGQGRKQSAEKGCT 187

Query: 62  DPIR 121
           DPIR
Sbjct: 188 DPIR 191

Query: 122  181
           
Sbjct: 248  191

Query: 182  194
           
Sbjct: 308  191

[Close]

BLAST of CU132643 vs. TrEMBL
Match: M5WAP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011809mg PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-13
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3


Query: 2   QARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTD 61
           QARLA                   ILPAKRFYRAEEYHQQYLEKGGG+G+KQSA KGCTD
Sbjct: 130 QARLAQKSKEAKQVELKDKKVVTEILPAKRFYRAEEYHQQYLEKGGGQGNKQSAEKGCTD 189

Query: 62  PIR 121
           PIR
Sbjct: 190 PIR 192

Query: 122  181
           
Sbjct: 250  192

Query: 182  191
           
Sbjct: 310  192

[Close]

BLAST of CU132643 vs. TrEMBL
Match: W9RJD5_9ROSA (Peptide methionine sulfoxide reductase OS=Morus notabilis GN=L484_018939 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-13
Identity = 41/64 (64.06%), Postives = 42/64 (65.62%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLA                   ILPAKRFYRAEEYHQQYLEKGGG+G  QSA KGCT
Sbjct: 128 TQARLAQQSKEAKQLELKDKKIVTEILPAKRFYRAEEYHQQYLEKGGGQGRNQSAEKGCT 187

Query: 62  DPIR 121
           DPIR
Sbjct: 188 DPIR 191

Query: 122  181
           
Sbjct: 248  191

Query: 182  194
           
Sbjct: 308  191

[Close]

BLAST of CU132643 vs. TrEMBL
Match: A0A067K443_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11372 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.3e-13
Identity = 41/64 (64.06%), Postives = 43/64 (67.19%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQA+LA                   ILPAKRFYRAEEYHQQYLEKGGG+G KQSA KGCT
Sbjct: 124 TQAKLAQESKEAKQLELKDKKIVTEILPAKRFYRAEEYHQQYLEKGGGEGLKQSAEKGCT 183

Query: 62  DPIR 121
           DPIR
Sbjct: 184 DPIR 187

Query: 122  181
           
Sbjct: 244  187

Query: 182  194
           
Sbjct: 304  187

[Close]

BLAST of CU132643 vs. NCBI nr
Match: gi|449440600|ref|XP_004138072.1| (PREDICTED: peptide methionine sulfoxide reductase-like [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 46/64 (71.88%), Postives = 46/64 (71.88%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLAH                  ILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT
Sbjct: 128 TQARLAHESKEAKKLELKDKEVVTEILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 187

Query: 62  DPIR 121
           DPIR
Sbjct: 188 DPIR 191

Query: 122  181
           
Sbjct: 248  191

Query: 182  194
           
Sbjct: 308  191

[Close]

BLAST of CU132643 vs. NCBI nr
Match: gi|659129012|ref|XP_008464484.1| (PREDICTED: peptide methionine sulfoxide reductase-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 45/64 (70.31%), Postives = 45/64 (70.31%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLAH                  ILPAKRFYRAEEYHQQYLEKGGGKGHKQSA KGCT
Sbjct: 128 TQARLAHESKEAKKLEFKDKEVVTEILPAKRFYRAEEYHQQYLEKGGGKGHKQSAEKGCT 187

Query: 62  DPIR 121
           DPIR
Sbjct: 188 DPIR 191

Query: 122  181
           
Sbjct: 248  191

Query: 182  194
           
Sbjct: 308  191

[Close]

BLAST of CU132643 vs. NCBI nr
Match: gi|372864100|gb|AEX99755.1| (methionine sulfoxide reductase [Morus alba var. multicaulis])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 42/64 (65.62%), Postives = 43/64 (67.19%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLA                   ILPAKRFYRAEEYHQQYLEKGGG+G KQSA KGCT
Sbjct: 128 TQARLAQESKEAKQLELKDKKIVTEILPAKRFYRAEEYHQQYLEKGGGQGRKQSAEKGCT 187

Query: 62  DPIR 121
           DPIR
Sbjct: 188 DPIR 191

Query: 122  181
           
Sbjct: 248  191

Query: 182  194
           
Sbjct: 308  191

[Close]

BLAST of CU132643 vs. NCBI nr
Match: gi|1009130677|ref|XP_015882430.1| (PREDICTED: peptide methionine sulfoxide reductase-like [Ziziphus jujuba])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = -3


Query: 2   TQARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCT 61
           TQARLA                   ILPAK+FYRAEEYHQQYLEKGG +G+KQSAGKGCT
Sbjct: 132 TQARLAQESKEAKQLELKDKKVVTEILPAKKFYRAEEYHQQYLEKGGRQGNKQSAGKGCT 191

Query: 62  DPIR 121
           DPIR
Sbjct: 192 DPIR 195

Query: 122  181
           
Sbjct: 252  195

Query: 182  194
           
Sbjct: 312  195

[Close]

BLAST of CU132643 vs. NCBI nr
Match: gi|694411051|ref|XP_009333900.1| (PREDICTED: peptide methionine sulfoxide reductase-like [Pyrus x bretschneideri])

HSP 1 Score: 81.3 bits (199), Expect = 6.9e-13
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3


Query: 2   QARLAHXXXXXXXXXXXXXXXXXXILPAKRFYRAEEYHQQYLEKGGGKGHKQSAGKGCTD 61
           QARLA                   ILPAK+FYRAEEYHQQYLEKGGGKG+KQSA KGCTD
Sbjct: 130 QARLAEESKEAKQAELKDKKVVTEILPAKKFYRAEEYHQQYLEKGGGKGNKQSAEKGCTD 189

Query: 62  PIR 121
           PIR
Sbjct: 190 PIR 192

Query: 122  181
           
Sbjct: 250  192

Query: 182  191
           
Sbjct: 310  192

The following BLAST results are available for this feature:

BLAST of CU132643 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MSRA_SOLLC	4.8e-14	89.74	Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 ...	[more]
MSRA_FRAAN	1.1e-13	87.18	Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2	[more]
MSRA4_ORYSJ	1.7e-11	82.05	Peptide methionine sulfoxide reductase A4, chloroplastic OS=Oryza sativa subsp. ...	[more]
MSRA_LACSA	1.1e-10	76.92	Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1	[more]
MSRA1_ARATH	2.5e-10	76.92	Peptide methionine sulfoxide reductase A1 OS=Arabidopsis thaliana GN=MSRA1 PE=2 ...	[more]

BLAST of CU132643 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRY2_CUCSA	7.2e-17	71.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002810 PE=3 SV=1	[more]
H2ESC5_MORAL	1.3e-13	65.63	Methionine sulfoxide reductase OS=Morus alba var. multicaulis GN=MMSR PE=2 SV=1	[more]
M5WAP8_PRUPE	3.7e-13	65.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011809mg PE=3 SV=1	[more]
W9RJD5_9ROSA	4.8e-13	64.06	Peptide methionine sulfoxide reductase OS=Morus notabilis GN=L484_018939 PE=3 SV...	[more]
A0A067K443_JATCU	6.3e-13	64.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11372 PE=3 SV=1	[more]

BLAST of CU132643 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440600\|ref\|XP_004138072.1\|	1.4e-16	71.88	PREDICTED: peptide methionine sulfoxide reductase-like [Cucumis sativus]	[more]
gi\|659129012\|ref\|XP_008464484.1\|	1.1e-15	70.31	PREDICTED: peptide methionine sulfoxide reductase-like [Cucumis melo]	[more]
gi\|372864100\|gb\|AEX99755.1\|	2.4e-13	65.63	methionine sulfoxide reductase [Morus alba var. multicaulis]	[more]
gi\|1009130677\|ref\|XP_015882430.1\|	4.1e-13	64.06	PREDICTED: peptide methionine sulfoxide reductase-like [Ziziphus jujuba]	[more]
gi\|694411051\|ref\|XP_009333900.1\|	6.9e-13	65.08	PREDICTED: peptide methionine sulfoxide reductase-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002569	Met_Sox_Rdtase_MsrA

Vocabulary: **Biological Process**
Term	Definition
GO:0006979	response to oxidative stress
GO:0030091	protein repair
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0008113	peptide-methionine (S)-S-oxide reductase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0030091	protein repair
biological_process	GO:0006979	response to oxidative stress
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0008113	peptide-methionine (S)-S-oxide reductase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G002810	Csa1G002810	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OBFPZ	FKNP3UI02OBFPZ	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002569	Peptide methionine sulphoxide reductase MsrA	GENE3D	G3DSA:3.30.1060.10		coord: 2..49 score: 5.0
IPR002569	Peptide methionine sulphoxide reductase MsrA	PFAM	PF01625	PMSR	coord: 3..48 score: 1.
IPR002569	Peptide methionine sulphoxide reductase MsrA	unknown	SSF55068	Peptide methionine sulfoxide reductase	coord: 3..61 score: 4.58
None	No IPR available	PANTHER	PTHR10173:SF41	SUBFAMILY NOT NAMED	coord: 2..65 score: 4.9