CU132225 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU132225
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 20490652 .. 20490911 (-)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGATTTCTGAGGTACTTGTCCGTGTCCCGTTCTAATATATTCGAGGCTCCCTTGGCTTCCTTGTTAAATTCCAATACCTTTGATCCCTTTGAAGCTGCTGCATAGTTGTATTCTGCACCGCTAGGCTCTAACCTATGAAAAGTACTTTCCACTTGACCAGCTCTGGTTTTGGTTTCTGAGATAAATGCTCTGCTTTTGAAAACTTCAAGACCAAGGGGTAAAACATGAGATAGGCGATCAAAATTTAGAGTATCAGTTTAG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU132225 vs. TrEMBL
Match: A0A0A0LPZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401390 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-39
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = -2


Query: 3   TDTLNFDRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSK 62
           TDTLNFDRLSHVLPLGLEVFKSRAFISETKTR GQVESTFHRLEPSGAEYNYAAASKGSK
Sbjct: 150 TDTLNFDRLSHVLPLGLEVFKSRAFISETKTRTGQVESTFHRLEPSGAEYNYAAASKGSK 209

Query: 63  VLEFNKEAKGASNILERDTDKYLRN 122
           VLEFNKEAKGASNILERDTDKYLRN
Sbjct: 210 VLEFNKEAKGASNILERDTDKYLRN 234

Query: 123  182
           
Sbjct: 270  234

Query: 183  242
           
Sbjct: 330  234

Query: 243  258
           
Sbjct: 390  234

[Close]

BLAST of CU132225 vs. TrEMBL
Match: A0A0D2S6Q5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G267400 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-22
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           DRLSH +P+GL+ FKSRAFIS++K+  GQ   T HRLEP G EYNYA+ASKG+KVL +NK
Sbjct: 145 DRLSHSVPVGLDEFKSRAFISKSKSGTGQAGIT-HRLEPGGKEYNYASASKGAKVLAYNK 204

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL RD DKYLRN
Sbjct: 205 EAKGASNILGRDEDKYLRN 222

Query: 123  182
           
Sbjct: 265  222

Query: 183  240
           
Sbjct: 325  222

[Close]

BLAST of CU132225 vs. TrEMBL
Match: A0A0D2RBB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G267400 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-22
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           DRLSH +P+GL+ FKSRAFIS++K+  GQ   T HRLEP G EYNYA+ASKG+KVL +NK
Sbjct: 145 DRLSHSVPVGLDEFKSRAFISKSKSGTGQAGIT-HRLEPGGKEYNYASASKGAKVLAYNK 204

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL RD DKYLRN
Sbjct: 205 EAKGASNILGRDEDKYLRN 222

Query: 123  182
           
Sbjct: 265  222

Query: 183  240
           
Sbjct: 325  222

[Close]

BLAST of CU132225 vs. TrEMBL
Match: B9SBU4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1044140 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-22
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           DRLSH +PLGL+ FKSRAF S++K    Q     HR+EP G EYNYA+ASKG+KVL+FNK
Sbjct: 80  DRLSHSVPLGLDEFKSRAFSSKSKLGTDQAGGVIHRVEPGGKEYNYASASKGAKVLDFNK 139

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL +D DKYLRN
Sbjct: 140 EAKGASNILGKDKDKYLRN 158

Query: 123  182
           
Sbjct: 200  158

Query: 183  240
           
Sbjct: 260  158

[Close]

BLAST of CU132225 vs. TrEMBL
Match: A0A0A0KUQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647460 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           D  S  + LGLE FKSRAF+S+ K+  GQ  +T HRLEP GAEYNYA+ASKG+KVL FNK
Sbjct: 148 DISSDTVLLGLEEFKSRAFVSQGKSETGQAGNTIHRLEPGGAEYNYASASKGAKVLAFNK 207

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL +D DKYLRN
Sbjct: 208 EAKGASNILGKDKDKYLRN 226

Query: 123  182
           
Sbjct: 268  226

Query: 183  240
           
Sbjct: 328  226

[Close]

BLAST of CU132225 vs. NCBI nr
Match: gi|778672879|ref|XP_004138825.2| (PREDICTED: uncharacterized protein LOC101220501 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 7.6e-39
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = -2


Query: 3   TDTLNFDRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSK 62
           TDTLNFDRLSHVLPLGLEVFKSRAFISETKTR GQVESTFHRLEPSGAEYNYAAASKGSK
Sbjct: 150 TDTLNFDRLSHVLPLGLEVFKSRAFISETKTRTGQVESTFHRLEPSGAEYNYAAASKGSK 209

Query: 63  VLEFNKEAKGASNILERDTDKYLRN 122
           VLEFNKEAKGASNILERDTDKYLRN
Sbjct: 210 VLEFNKEAKGASNILERDTDKYLRN 234

Query: 123  182
           
Sbjct: 270  234

Query: 183  242
           
Sbjct: 330  234

Query: 243  258
           
Sbjct: 390  234

[Close]

BLAST of CU132225 vs. NCBI nr
Match: gi|659081157|ref|XP_008441182.1| (PREDICTED: uncharacterized protein LOC103485395 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-34
Identity = 78/85 (91.76%), Postives = 78/85 (91.76%), Query Frame = -2


Query: 3   TDTLNFDRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSK 62
           TD LN DRLSHVLPLGLEVFKSRAFISETKTR GQVEST  RLEPSGAEYNYAA SKGSK
Sbjct: 146 TDALNSDRLSHVLPLGLEVFKSRAFISETKTRTGQVESTLLRLEPSGAEYNYAADSKGSK 205

Query: 63  VLEFNKEAKGASNILERDTDKYLRN 122
           VLEFN EAKGASNILERDTDKYLRN
Sbjct: 206 VLEFNMEAKGASNILERDTDKYLRN 230

Query: 123  182
           
Sbjct: 266  230

Query: 183  242
           
Sbjct: 326  230

Query: 243  258
           
Sbjct: 386  230

[Close]

BLAST of CU132225 vs. NCBI nr
Match: gi|823154244|ref|XP_012476988.1| (PREDICTED: uncharacterized protein LOC105792765 [Gossypium raimondii])

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           DRLSH +P+GL+ FKSRAFIS++K+  GQ   T HRLEP G EYNYA+ASKG+KVL +NK
Sbjct: 145 DRLSHSVPVGLDEFKSRAFISKSKSGTGQAGIT-HRLEPGGKEYNYASASKGAKVLAYNK 204

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL RD DKYLRN
Sbjct: 205 EAKGASNILGRDEDKYLRN 222

Query: 123  182
           
Sbjct: 265  222

Query: 183  240
           
Sbjct: 325  222

[Close]

BLAST of CU132225 vs. NCBI nr
Match: gi|763759610|gb|KJB26941.1| (hypothetical protein B456_004G267400 [Gossypium raimondii])

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           DRLSH +P+GL+ FKSRAFIS++K+  GQ   T HRLEP G EYNYA+ASKG+KVL +NK
Sbjct: 145 DRLSHSVPVGLDEFKSRAFISKSKSGTGQAGIT-HRLEPGGKEYNYASASKGAKVLAYNK 204

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL RD DKYLRN
Sbjct: 205 EAKGASNILGRDEDKYLRN 222

Query: 123  182
           
Sbjct: 265  222

Query: 183  240
           
Sbjct: 325  222

[Close]

BLAST of CU132225 vs. NCBI nr
Match: gi|223537291|gb|EEF38922.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-21
Identity = 54/79 (68.35%), Postives = 63/79 (79.75%), Query Frame = -2


Query: 3   DRLSHVLPLGLEVFKSRAFISETKTRAGQVESTFHRLEPSGAEYNYAAASKGSKVLEFNK 62
           DRLSH +PLGL+ FKSRAF S++K    Q     HR+EP G EYNYA+ASKG+KVL+FNK
Sbjct: 80  DRLSHSVPLGLDEFKSRAFSSKSKLGTDQAGGVIHRVEPGGKEYNYASASKGAKVLDFNK 139

Query: 63  EAKGASNILERDTDKYLRN 122
           EAKGASNIL +D DKYLRN
Sbjct: 140 EAKGASNILGKDKDKYLRN 158

Query: 123  182
           
Sbjct: 200  158

Query: 183  240
           
Sbjct: 260  158

The following BLAST results are available for this feature:

BLAST of CU132225 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPZ2_CUCSA	4.0e-39	98.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401390 PE=4 SV=1	[more]
A0A0D2S6Q5_GOSRA	2.0e-22	72.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G267400 PE=4 SV=1	[more]
A0A0D2RBB4_GOSRA	2.0e-22	72.15	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G267400 PE=4 SV=1	[more]
B9SBU4_RICCO	4.5e-22	68.35	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1044140 PE=4 SV=1	[more]
A0A0A0KUQ1_CUCSA	1.0e-21	69.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G647460 PE=4 SV=1	[more]

BLAST of CU132225 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778672879\|ref\|XP_004138825.2\|	7.6e-39	98.82	PREDICTED: uncharacterized protein LOC101220501 [Cucumis sativus]	[more]
gi\|659081157\|ref\|XP_008441182.1\|	5.6e-34	91.76	PREDICTED: uncharacterized protein LOC103485395 [Cucumis melo]	[more]
gi\|823154244\|ref\|XP_012476988.1\|	4.9e-22	72.15	PREDICTED: uncharacterized protein LOC105792765 [Gossypium raimondii]	[more]
gi\|763759610\|gb\|KJB26941.1\|	4.9e-22	72.15	hypothetical protein B456_004G267400 [Gossypium raimondii]	[more]
gi\|223537291\|gb\|EEF38922.1\|	1.1e-21	68.35	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G401390	Csa2G401390	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02O1MBS	FKNP3UI02O1MBS	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12953	MEMBRANE PROTEIN CH1 RELATED	coord: 4..88 score: 3.4
None	No IPR available	PANTHER	PTHR12953:SF1	GALACTOSE-BINDING PROTEIN	coord: 4..88 score: 3.4