CU132079 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU132079
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Exostosin family protein
Location	Chr7 : 7252585 .. 7253862 (+)
Sequence length	244

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCAGCTGTTCTGCTTGTGGTAGATTTTGGCGGTTGGTTTAGGCTCGACACAAAGTCCTCTAATGGTTCCTCGCCAGATATGATTCAGCACACTCAAGTTTCAGTACTTAAGGATGTGATTGTGCCATACACCCATTTACTACCTAGGCTGCACTTATCAGCAAACAAGAAGCGTCAGACCTTACTTTATTTCAAAAGGGGCGAAACATAGGCATCGGGGAGGATTGGTCAGGGGAGAAACTCTG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU132079 vs. TrEMBL
Match: A0A0A0K3Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G201900 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.1e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT
Sbjct: 239 PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 298

Query: 61  LLYFK 120
           LLYFK
Sbjct: 299 LLYFK 303

Query: 121  180
           
Sbjct: 359  303

Query: 181  196
           
Sbjct: 419  303

[Close]

BLAST of CU132079 vs. TrEMBL
Match: A0A067KDW4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12702 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGWFRLD+KSSNGSS DMIQHTQVS+LKDVIVPYTHLLPRL+LS NKKR T
Sbjct: 231 PAILLVVDFGGWFRLDSKSSNGSSSDMIQHTQVSLLKDVIVPYTHLLPRLNLSENKKRHT 290

Query: 61  LLYFK 120
           LLYFK
Sbjct: 291 LLYFK 295

Query: 121  180
           
Sbjct: 351  295

Query: 181  196
           
Sbjct: 411  295

[Close]

BLAST of CU132079 vs. TrEMBL
Match: A0A067KDW4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12702 PE=4 SV=1)

HSP 1 Score: 31.2 bits (69), Expect = 7.3e+02
Identity = 16/30 (53.33%), Postives = 19/30 (63.33%), Query Frame = 2


Query: 143 LGCTYQQTRSVRPYFISKGAKHRHRGGLVR 202
           L  +  + R    YF  KGAKHRHRGG+VR
Sbjct: 280 LNLSENKKRHTLLYF--KGAKHRHRGGVVR 307

Query: 203  233
           
Sbjct: 340  307

HSP 2 Score: 120.2 bits (300), Expect = 1.2e-24
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGW+RLD+KSSNGSS DMIQHTQVS+LKDVIVPYTHLLPRL LS NKKR T
Sbjct: 222 PAILLVVDFGGWYRLDSKSSNGSSSDMIQHTQVSLLKDVIVPYTHLLPRLQLSENKKRST 281

Query: 61  LLYFK 120
           LLYFK
Sbjct: 282 LLYFK 286

Query: 121  180
           
Sbjct: 342  286

Query: 181  196
           
Sbjct: 402  286

[Close]

BLAST of CU132079 vs. TrEMBL
Match: B9IQM2_POPTR (Exostosin family protein OS=Populus trichocarpa GN=POPTR_0019s11670g PE=4 SV=1)

HSP 1 Score: 32.7 bits (73), Expect = 2.5e+02
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 2


Query: 167 RSVRPYFISKGAKHRHRGGLVR 226
           RS   YF  KGAKHRHRGG+VR
Sbjct: 279 RSTLLYF--KGAKHRHRGGIVR 298

Query: 227  233
           
Sbjct: 339  298

HSP 2 Score: 119.4 bits (298), Expect = 2.0e-24
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGWFRLDTKS NG+S DMI HTQVS+LKDVIVPYTHLLPRL LS NKKRQT
Sbjct: 222 PAILLVVDFGGWFRLDTKSFNGNSSDMIHHTQVSLLKDVIVPYTHLLPRLQLSENKKRQT 281

Query: 61  LLYFK 120
           LLYFK
Sbjct: 282 LLYFK 286

Query: 121  180
           
Sbjct: 342  286

Query: 181  196
           
Sbjct: 402  286

[Close]

BLAST of CU132079 vs. TrEMBL
Match: A0A061FJD6_THECC (Exostosin family protein OS=Theobroma cacao GN=TCM_036641 PE=4 SV=1)

HSP 1 Score: 32.0 bits (71), Expect = 4.3e+02
Identity = 13/13 (100.00%), Postives = 13/13 (100.00%), Query Frame = 2


Query: 194 KGAKHRHRGGLVR 233
           KGAKHRHRGGLVR
Sbjct: 286 KGAKHRHRGGLVR 298

HSP 2 Score: 118.6 bits (296), Expect = 3.5e-24
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGW+RLD+KSSNGSS DM+ HTQVS+LKDV+VPYTHLLPRLHL  N+KRQT
Sbjct: 240 PAILLVVDFGGWYRLDSKSSNGSSSDMVHHTQVSLLKDVVVPYTHLLPRLHLLENQKRQT 299

Query: 61  LLYFK 120
           LLYFK
Sbjct: 300 LLYFK 304

Query: 121  180
           
Sbjct: 360  304

Query: 181  196
           
Sbjct: 420  304

[Close]

BLAST of CU132079 vs. NCBI nr
Match: gi|778725585|ref|XP_004139861.2| (PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT
Sbjct: 239 PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 298

Query: 61  LLYFK 120
           LLYFK
Sbjct: 299 LLYFK 303

Query: 121  180
           
Sbjct: 359  303

Query: 181  196
           
Sbjct: 419  303

[Close]

BLAST of CU132079 vs. NCBI nr
Match: gi|659093871|ref|XP_008447763.1| (PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT
Sbjct: 230 PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 289

Query: 61  LLYFK 120
           LLYFK
Sbjct: 290 LLYFK 294

Query: 121  180
           
Sbjct: 350  294

Query: 181  196
           
Sbjct: 410  294

[Close]

BLAST of CU132079 vs. NCBI nr
Match: gi|743917050|ref|XP_011002506.1| (PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica])

HSP 1 Score: 125.6 bits (314), Expect = 4.1e-26
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGW+RLD+KSSNGSSPDMIQHTQVS+LKDVIVPYTHLLPRL LS NKKR T
Sbjct: 222 PAILLVVDFGGWYRLDSKSSNGSSPDMIQHTQVSLLKDVIVPYTHLLPRLQLSENKKRST 281

Query: 61  LLYFK 120
           LLYFK
Sbjct: 282 LLYFK 286

Query: 121  180
           
Sbjct: 342  286

Query: 181  196
           
Sbjct: 402  286

[Close]

BLAST of CU132079 vs. NCBI nr
Match: gi|1009137914|ref|XP_015886310.1| (PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGW+RLD+KSSNG+S DMIQHTQVS+LKD+IVPYTHLLPRLHLS NK RQT
Sbjct: 10  PAILLVVDFGGWYRLDSKSSNGNSSDMIQHTQVSLLKDIIVPYTHLLPRLHLSENKNRQT 69

Query: 61  LLYFK 120
           LLYFK
Sbjct: 70  LLYFK 74

Query: 121  180
           
Sbjct: 130  74

Query: 181  196
           
Sbjct: 190  74

[Close]

BLAST of CU132079 vs. NCBI nr
Match: gi|802621769|ref|XP_012076129.1| (PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas])

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1


Query: 1   PAVLLVVDFGGWFRLDTKSSNGSSPDMIQHTQVSVLKDVIVPYTHLLPRLHLSANKKRQT 60
           PA+LLVVDFGGWFRLD+KSSNGSS DMIQHTQVS+LKDVIVPYTHLLPRL+LS NKKR T
Sbjct: 231 PAILLVVDFGGWFRLDSKSSNGSSSDMIQHTQVSLLKDVIVPYTHLLPRLNLSENKKRHT 290

Query: 61  LLYFK 120
           LLYFK
Sbjct: 291 LLYFK 295

Query: 121  180
           
Sbjct: 351  295

Query: 181  196
           
Sbjct: 411  295

The following BLAST results are available for this feature:

BLAST of CU132079 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3Q7_CUCSA	6.1e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G201900 PE=4 SV=1	[more]
A0A067KDW4_JATCU	4.1e-25	89.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12702 PE=4 SV=1	[more]
A0A067KDW4_JATCU	7.3e+02	53.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12702 PE=4 SV=1	[more]
B9IQM2_POPTR	2.5e+02	72.73	Exostosin family protein OS=Populus trichocarpa GN=POPTR_0019s11670g PE=4 SV=1	[more]
A0A061FJD6_THECC	4.3e+02	100.00	Exostosin family protein OS=Theobroma cacao GN=TCM_036641 PE=4 SV=1	[more]

BLAST of CU132079 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725585\|ref\|XP_004139861.2\|	1.8e-29	100.00	PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis sativus]	[more]
gi\|659093871\|ref\|XP_008447763.1\|	1.8e-29	100.00	PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis melo]	[more]
gi\|743917050\|ref\|XP_011002506.1\|	4.1e-26	89.23	PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]	[more]
gi\|1009137914\|ref\|XP_015886310.1\|	1.2e-25	86.15	PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Ziziphus jujuba]	[more]
gi\|802621769\|ref\|XP_012076129.1\|	1.2e-25	89.23	PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G201900	Csa7G201900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NZFV5	FKNP3UI02NZFV5	EST