CU132049 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU132049
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Hydroxyacid dehydrogenase
Location	Chr7 : 17800074 .. 17802053 (-)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GATTGGATAAGATTGATCTCAAAAAGTGCAAGGAGAAGGGGATTCGGGTCACTAATACTCCCGATGTTTTAACTGAAGACGTTGCGGATTTGGCGATTGGGTTGATTATAGCGGTGCTGAGGAGGTTGTGTGAATGCGATAGATATGTCAGGAGCGGGAAGTGGAAGATTGGTAACTACAAGTTGACTACCAAGTTCTCTGGCAAATCGGTTGGCATTATTGGTTTTGGGAAGGATTGGCTTAGCAATT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU132049 vs. Swiss-Prot
Match: HPR2_ARATH (Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-33
Identity = 68/77 (88.31%), Postives = 71/77 (92.21%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTPDVLTEDVADLAIGLI+A+LRRLCECDRYVRSGKWK G ++
Sbjct: 78  LDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKQGEFQ 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. Swiss-Prot
Match: HPPR_PLESU (Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-31
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDK+DL KC+EKG+RVTNTPDVLT+DVADLAIGLI+AVLRR+CECD+YVR G WK G++K
Sbjct: 78  LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGK VGIIG G+
Sbjct: 138 LTTKFSGKRVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. Swiss-Prot
Match: HPR3_ARATH (Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-17
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKW-KIGNY 62
           +D IDL  CK +GI +TN  +  ++DVAD A+GL+I+VLRR+   DRYVRSG W K G++
Sbjct: 85  IDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRRIPAADRYVRSGNWAKFGDF 144

Query: 63  KLTTKFSGKSVGIIGFG 122
           +L +K SGK VGI+G G
Sbjct: 145 QLGSKVSGKRVGIVGLG 161

Query: 123  182
           
Sbjct: 205  161

Query: 183  231
           
Sbjct: 265  161

[Close]

BLAST of CU132049 vs. Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 3


Query: 6   DKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNY-- 65
           D ID+K+  ++GI VTNTP VLTE  AD A  L++A  RR+ E DRYVR GKWK+  +  
Sbjct: 79  DNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPM 138

Query: 66  -KLTTKFSGKSVGIIGFGK 125
             L     G+++GI+G G+
Sbjct: 139 MMLGYDVYGRTLGIVGMGR 157

Query: 126  185
           
Sbjct: 199  157

Query: 186  234
           
Sbjct: 259  157

[Close]

BLAST of CU132049 vs. Swiss-Prot
Match: GYAR_THELN (Glyoxylate reductase OS=Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) GN=gyaR PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 3


Query: 6   DKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWK---IGN 65
           D ID+++  ++GI VTNTP VLT+  ADLA  L++AV RR+ E D +VRSG+WK   +G 
Sbjct: 79  DNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGW 138

Query: 66  YKLT---TKFSGKSVGIIGFGK 125
           + L        GK++GI+GFG+
Sbjct: 139 HPLMFLGYGLKGKTLGIVGFGR 160

Query: 126  185
           
Sbjct: 199  160

Query: 186  234
           
Sbjct: 259  160

[Close]

BLAST of CU132049 vs. TrEMBL
Match: A0A0A0KAG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446970 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.4e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK
Sbjct: 111 LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 170

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 171 LTTKFSGKSVGIIGLGR 187

Query: 123  182
           
Sbjct: 231  187

Query: 183  234
           
Sbjct: 291  187

[Close]

BLAST of CU132049 vs. TrEMBL
Match: A0A087HJT9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G250000 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-31
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTPDVLTEDVADLAIGLI+A+LRRLCECDR+VRSGKWK G++K
Sbjct: 78  LDKIDLAKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRFVRSGKWKTGDFK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. TrEMBL
Match: A0A0D3CVI5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-31
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTP+VLTEDVADLAIGLI+A+LRRLCECDRYVRSGKWK G++K
Sbjct: 78  LDKIDLGKCKEKGIRVTNTPEVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKYGDFK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. TrEMBL
Match: A0A078CQC5_BRANA (BnaC06g18970D protein OS=Brassica napus GN=BnaC06g18970D PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-31
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTP+VLTEDVADLAIGLI+A+LRRLCECDRYVRSGKWK G++K
Sbjct: 78  LDKIDLGKCKEKGIRVTNTPEVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKYGDFK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. TrEMBL
Match: D7KXP1_ARALL (Oxidoreductase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477279 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-31
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTPDVLTEDVADLAIGLI+A+LRRLCECDRYVRSGKWK G+++
Sbjct: 78  LDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKQGDFQ 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. NCBI nr
Match: gi|700190149|gb|KGN45382.1| (hypothetical protein Csa_7G446970 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.3e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK
Sbjct: 111 LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 170

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 171 LTTKFSGKSVGIIGLGR 187

Query: 123  182
           
Sbjct: 231  187

Query: 183  234
           
Sbjct: 291  187

[Close]

BLAST of CU132049 vs. NCBI nr
Match: gi|778729342|ref|XP_004141766.2| (PREDICTED: hydroxyphenylpyruvate reductase [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.3e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK
Sbjct: 78  LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. NCBI nr
Match: gi|729440724|ref|XP_010521519.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Tarenaya hassleriana])

HSP 1 Score: 144.4 bits (363), Expect = 8.6e-32
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKE+GIRVTNTPDVLTEDVADLAIGL+++VLRRLCECDRYVRSGKWK GNYK
Sbjct: 78  LDKIDLGKCKERGIRVTNTPDVLTEDVADLAIGLMLSVLRRLCECDRYVRSGKWKSGNYK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKF+GKSVGIIG G+
Sbjct: 138 LTTKFTGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. NCBI nr
Match: gi|674249626|gb|KFK42391.1| (hypothetical protein AALP_AA2G250000 [Arabis alpina])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTPDVLTEDVADLAIGLI+A+LRRLCECDR+VRSGKWK G++K
Sbjct: 78  LDKIDLAKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRFVRSGKWKTGDFK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

[Close]

BLAST of CU132049 vs. NCBI nr
Match: gi|922505600|ref|XP_013589770.1| (PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Brassica oleracea var. oleracea])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-31
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 3


Query: 3   LDKIDLKKCKEKGIRVTNTPDVLTEDVADLAIGLIIAVLRRLCECDRYVRSGKWKIGNYK 62
           LDKIDL KCKEKGIRVTNTP+VLTEDVADLAIGLI+A+LRRLCECDRYVRSGKWK G++K
Sbjct: 78  LDKIDLGKCKEKGIRVTNTPEVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKYGDFK 137

Query: 63  LTTKFSGKSVGIIGFGK 122
           LTTKFSGKSVGIIG G+
Sbjct: 138 LTTKFSGKSVGIIGLGR 154

Query: 123  182
           
Sbjct: 198  154

Query: 183  234
           
Sbjct: 258  154

The following BLAST results are available for this feature:

BLAST of CU132049 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HPR2_ARATH	2.7e-33	88.31	Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1...	[more]
HPPR_PLESU	5.5e-31	79.22	Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=...	[more]
HPR3_ARATH	2.7e-17	54.55	Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 S...	[more]
GYAR_KORCO	1.1e-13	48.10	Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1	[more]
GYAR_THELN	2.3e-13	47.56	Glyoxylate reductase OS=Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / J...	[more]

BLAST of CU132049 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAG9_CUCSA	4.4e-35	97.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446970 PE=3 SV=1	[more]
A0A087HJT9_ARAAL	1.0e-31	88.31	Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G250000 PE=3 SV=1	[more]
A0A0D3CVI5_BRAOL	1.3e-31	88.31	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1	[more]
A0A078CQC5_BRANA	1.3e-31	88.31	BnaC06g18970D protein OS=Brassica napus GN=BnaC06g18970D PE=3 SV=1	[more]
D7KXP1_ARALL	2.3e-31	88.31	Oxidoreductase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_...	[more]

BLAST of CU132049 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190149\|gb\|KGN45382.1\|	6.3e-35	97.40	hypothetical protein Csa_7G446970 [Cucumis sativus]	[more]
gi\|778729342\|ref\|XP_004141766.2\|	6.3e-35	97.40	PREDICTED: hydroxyphenylpyruvate reductase [Cucumis sativus]	[more]
gi\|729440724\|ref\|XP_010521519.1\|	8.6e-32	88.31	PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Tarenaya hassleriana]	[more]
gi\|674249626\|gb\|KFK42391.1\|	1.5e-31	88.31	hypothetical protein AALP_AA2G250000 [Arabis alpina]	[more]
gi\|922505600\|ref\|XP_013589770.1\|	1.9e-31	88.31	PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Brassica oleracea var. o...	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G446970	Csa7G446970	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NYX2L	FKNP3UI02NYX2L	EST