CU132039 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU132039
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	Chr3 : 4649 .. 4869 (+)
Sequence length	221

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAACTGAACTTCATTTCACGACATGGAAGCAGTGGCGGAGGGATTGTGGAGGCTGGCAGATTACCACGAGAAGCAGGGGGAATTAGGGAAGGCAATAAAGTGTTTGGAAGCCATATGCCAAAGTCCCGTCTCTTTCTTTCCAGTCCTTGAGGTCAAGACTCGGCTTCGAATTGCCACCCTTCTGCTCACTTATTCTCACAACGTCAATCATGCCAAATCCC

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU132039 vs. TrEMBL
Match: A0A0A0L4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000010 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. TrEMBL
Match: V7BAU7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G243600g PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-24
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS VSFFP++EVKTRLRIATLLL +SHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSEVSFFPIVEVKTRLRIATLLLHHSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. TrEMBL
Match: K7KAE5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G238400 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS  SFFP++EVKTRLRIATLLL +SHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSDASFFPIVEVKTRLRIATLLLQHSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. TrEMBL
Match: A0A0B2S9M1_GLYSO (MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_013351 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-24
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS  SFFP++EVKTRLRIATLLL +SHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSDASFFPIVEVKTRLRIATLLLQHSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. TrEMBL
Match: A0A0B2S4C3_GLYSO (MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_016910 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-24
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS  SFFP++EVKTRLRIATLLL +SHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSDASFFPIVEVKTRLRIATLLLHHSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. NCBI nr
Match: gi|449456905|ref|XP_004146189.1| (PREDICTED: MAU2 chromatid cohesion factor homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. NCBI nr
Match: gi|778674503|ref|XP_011650234.1| (PREDICTED: MAU2 chromatid cohesion factor homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. NCBI nr
Match: gi|700200444|gb|KGN55577.1| (hypothetical protein Csa_3G000010 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. NCBI nr
Match: gi|659095143|ref|XP_008448423.1| (PREDICTED: LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN
Sbjct: 1   MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

[Close]

BLAST of CU132039 vs. NCBI nr
Match: gi|593499999|ref|XP_007141994.1| (hypothetical protein PHAVU_008G243600g [Phaseolus vulgaris])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 2


Query: 23  MEAVAEGLWRLADYHEKQGELGKAIKCLEAICQSPVSFFPVLEVKTRLRIATLLLTYSHN 82
           MEAVAEGLW LA+YHEK+GE+GKA+KCLEAICQS VSFFP++EVKTRLRIATLLL +SHN
Sbjct: 1   MEAVAEGLWGLAEYHEKRGEIGKAVKCLEAICQSEVSFFPIVEVKTRLRIATLLLHHSHN 60

Query: 83  VNHAKS 142
           VNHAKS
Sbjct: 61  VNHAKS 66

Query: 143  202
           
Sbjct: 121  66

Query: 203  221
           
Sbjct: 181  66

The following BLAST results are available for this feature:

BLAST of CU132039 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4R7_CUCSA	1.9e-29	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000010 PE=4 SV=1	[more]
V7BAU7_PHAVU	1.4e-24	84.85	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G243600g PE=4 SV=1	[more]
K7KAE5_SOYBN	3.1e-24	83.33	Uncharacterized protein OS=Glycine max GN=GLYMA_02G238400 PE=4 SV=1	[more]
A0A0B2S9M1_GLYSO	3.1e-24	83.33	MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_013351 PE=4 SV=1	[more]
A0A0B2S4C3_GLYSO	4.1e-24	83.33	MAU2 chromatid cohesion factor like OS=Glycine soja GN=glysoja_016910 PE=4 SV=1	[more]

BLAST of CU132039 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456905\|ref\|XP_004146189.1\|	1.6e-29	100.00	PREDICTED: MAU2 chromatid cohesion factor homolog isoform X1 [Cucumis sativus]	[more]
gi\|778674503\|ref\|XP_011650234.1\|	1.6e-29	100.00	PREDICTED: MAU2 chromatid cohesion factor homolog isoform X2 [Cucumis sativus]	[more]
gi\|700200444\|gb\|KGN55577.1\|	1.6e-29	100.00	hypothetical protein Csa_3G000010 [Cucumis sativus]	[more]
gi\|659095143\|ref\|XP_008448423.1\|	1.6e-29	100.00	PREDICTED: LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog [Cucumis ...	[more]
gi\|593499999\|ref\|XP_007141994.1\|	1.2e-24	84.85	hypothetical protein PHAVU_008G243600g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR019440	MAU2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007064	mitotic sister chromatid cohesion

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G000010	Csa3G000010	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NYSF3	FKNP3UI02NYSF3	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 4..34 score: 6.
IPR019440	Chromatid cohesion factor MAU2	PANTHER	PTHR21394	UNCHARACTERIZED	coord: 1..66 score: 1.6
None	No IPR available	PANTHER	PTHR21394:SF0	MAU2 CHROMATID COHESION FACTOR HOMOLOG	coord: 1..66 score: 1.6