CU130250 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU130250
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 11298934 .. 11300545 (+)
Sequence length	239

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTATTTTCCACAGTTAATCCACTAGTATCTCTCTGTAGAATCGTCACCTGCGCAGACAGAGTGGTAGCTTCGGACTGCAGAGTCTGAACCTTTCTCTCCAGTTCATTCGTGTATCGTATCTTCCTCTCTTTCGAACGAGCCGCAGATTGTCTGTTCGCAAGAATCCTTTTAGCTCTTTTCGGGTCAATTAGGGCAAGCTCCGCAAGTCTCTCCGGGTCCATCGCCTTCTTCACTCCAT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU130250 vs. Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-27
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = -3


Query: 4   KKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSA 63
           KKAM PE+L+ELA IDPKRAKRILANRQSAARSKERK RY  ELERKVQTLQ+EATTLSA
Sbjct: 117 KKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSA 176

Query: 64  QVTILQRDTSGLTVEN 123
           Q+T+ QRDT+GL+ EN
Sbjct: 177 QLTLFQRDTTGLSAEN 192

Query: 124  183
           
Sbjct: 237  192

Query: 184  232
           
Sbjct: 297  192

[Close]

BLAST of CU130250 vs. Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-26
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = -3


Query: 4   KKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSA 63
           KK+M   +LAELALIDPKRAKRI ANRQSAARSKERK RY  ELERKVQTLQ+EATTLSA
Sbjct: 186 KKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSA 245

Query: 64  QVTILQRDTSGLTVEN 123
           Q+T+LQRDT+GLTVEN
Sbjct: 246 QLTLLQRDTNGLTVEN 261

Query: 124  183
           
Sbjct: 306  261

Query: 184  232
           
Sbjct: 366  261

[Close]

BLAST of CU130250 vs. Swiss-Prot
Match: VIP1_ARATH (Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.3e-26
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = -3


Query: 1   MDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVT 60
           M  +RLAELAL+DPKRAKRILANRQSAARSKERKIRYT ELERKVQTLQ+EATTLSAQVT
Sbjct: 182 MGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVT 241

Query: 61  ILQRDTSGLTVENK 120
           +LQR TS L  ENK
Sbjct: 242 MLQRGTSELNTENK 255

Query: 121  180
           
Sbjct: 302  255

Query: 181  223
           
Sbjct: 362  255

[Close]

BLAST of CU130250 vs. Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-26
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = -3


Query: 4   KKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSA 63
           KKA+   +LAELAL+DPKRAKRI ANRQSAARSKERK+RY  ELERKVQTLQ+EATTLSA
Sbjct: 166 KKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSA 225

Query: 64  QVTILQRDTSGLTVEN 123
           Q+ +LQRDTSGLT EN
Sbjct: 226 QLALLQRDTSGLTTEN 241

Query: 124  183
           
Sbjct: 286  241

Query: 184  232
           
Sbjct: 346  241

[Close]

BLAST of CU130250 vs. Swiss-Prot
Match: BZP02_ORYSJ (Basic leucine zipper 2 OS=Oryza sativa subsp. japonica GN=BZIP02 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-12
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = -3


Query: 4   PERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTIL 63
           P + A  A +DPKR KRILANRQSA RS+ RK++Y +ELER V +LQ+E + LS +V  L
Sbjct: 178 PGQPASPATVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFL 237

Query: 64  QRDTSGLTVEN 123
               S LT+ N
Sbjct: 238 DHQRSLLTLGN 248

Query: 124  183
           
Sbjct: 298  248

Query: 184  217
           
Sbjct: 358  248

[Close]

BLAST of CU130250 vs. TrEMBL
Match: A0A0A0K9Q8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G324150 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-33
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL
Sbjct: 168 GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 227

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVTILQRDTSGLTVENK
Sbjct: 228 SAQVTILQRDTSGLTVENK 246

Query: 121  180
           
Sbjct: 288  246

Query: 181  238
           
Sbjct: 348  246

[Close]

BLAST of CU130250 vs. TrEMBL
Match: A0A0J8D151_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g011350 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-31
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           GVKKAM PERLAELALIDPKRAKRILANRQSAARSKERKIRYT ELER+VQTLQ+EATTL
Sbjct: 182 GVKKAMPPERLAELALIDPKRAKRILANRQSAARSKERKIRYTGELERRVQTLQTEATTL 241

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLTVENK
Sbjct: 242 SAQVTLLQRDTTGLTVENK 260

Query: 121  180
           
Sbjct: 302  260

Query: 181  238
           
Sbjct: 362  260

[Close]

BLAST of CU130250 vs. TrEMBL
Match: A0A0K9QGQ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181430 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-30
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           G+KKAM PERLAELALIDPKRAKRILANRQSAARSKERKIRYT ELER+VQTLQ+EATTL
Sbjct: 178 GIKKAMPPERLAELALIDPKRAKRILANRQSAARSKERKIRYTGELERRVQTLQTEATTL 237

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLT+ENK
Sbjct: 238 SAQVTLLQRDTTGLTIENK 256

Query: 121  180
           
Sbjct: 298  256

Query: 181  238
           
Sbjct: 358  256

[Close]

BLAST of CU130250 vs. TrEMBL
Match: F6GYV2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0076g00330 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-30
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           G KKAM P+RLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQ+EATTL
Sbjct: 173 GAKKAMGPDRLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQTEATTL 232

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLT ENK
Sbjct: 233 SAQVTMLQRDTTGLTAENK 251

Query: 121  180
           
Sbjct: 293  251

Query: 181  238
           
Sbjct: 353  251

[Close]

BLAST of CU130250 vs. TrEMBL
Match: A0A067L3F8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25192 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-30
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           GVKKAM P+RLAELALIDPKRAKRILANRQSAARSKERKIRYT+ELERKVQTLQ+EATTL
Sbjct: 170 GVKKAMGPDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTL 229

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLT ENK
Sbjct: 230 SAQVTMLQRDTTGLTAENK 248

Query: 121  180
           
Sbjct: 290  248

Query: 181  238
           
Sbjct: 350  248

[Close]

BLAST of CU130250 vs. NCBI nr
Match: gi|449443774|ref|XP_004139652.1| (PREDICTED: transcription factor VIP1-like [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 4.1e-31
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL
Sbjct: 168 GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 227

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVTILQRDTSGLTVENK
Sbjct: 228 SAQVTILQRDTSGLTVENK 246

Query: 121  180
           
Sbjct: 288  246

Query: 181  238
           
Sbjct: 348  246

[Close]

BLAST of CU130250 vs. NCBI nr
Match: gi|659123141|ref|XP_008461512.1| (PREDICTED: transcription factor VIP1 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 4.1e-31
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL
Sbjct: 168 GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 227

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVTILQRDTSGLTVENK
Sbjct: 228 SAQVTILQRDTSGLTVENK 246

Query: 121  180
           
Sbjct: 288  246

Query: 181  238
           
Sbjct: 348  246

[Close]

BLAST of CU130250 vs. NCBI nr
Match: gi|731313494|ref|XP_010680531.1| (PREDICTED: transcription factor VIP1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           GVKKAM PERLAELALIDPKRAKRILANRQSAARSKERKIRYT ELER+VQTLQ+EATTL
Sbjct: 182 GVKKAMPPERLAELALIDPKRAKRILANRQSAARSKERKIRYTGELERRVQTLQTEATTL 241

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLTVENK
Sbjct: 242 SAQVTLLQRDTTGLTVENK 260

Query: 121  180
           
Sbjct: 302  260

Query: 181  238
           
Sbjct: 362  260

[Close]

BLAST of CU130250 vs. NCBI nr
Match: gi|902160153|gb|KNA06400.1| (hypothetical protein SOVF_181430 [Spinacia oleracea])

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-28
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           G+KKAM PERLAELALIDPKRAKRILANRQSAARSKERKIRYT ELER+VQTLQ+EATTL
Sbjct: 178 GIKKAMPPERLAELALIDPKRAKRILANRQSAARSKERKIRYTGELERRVQTLQTEATTL 237

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLT+ENK
Sbjct: 238 SAQVTLLQRDTTGLTIENK 256

Query: 121  180
           
Sbjct: 298  256

Query: 181  238
           
Sbjct: 358  256

[Close]

BLAST of CU130250 vs. NCBI nr
Match: gi|297735830|emb|CBI18550.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-28
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = -3


Query: 1   GVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTL 60
           G KKAM P+RLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQ+EATTL
Sbjct: 18  GAKKAMGPDRLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQTEATTL 77

Query: 61  SAQVTILQRDTSGLTVENK 120
           SAQVT+LQRDT+GLT ENK
Sbjct: 78  SAQVTMLQRDTTGLTAENK 96

Query: 121  180
           
Sbjct: 138  96

Query: 181  238
           
Sbjct: 198  96

The following BLAST results are available for this feature:

BLAST of CU130250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RF2B_ORYSJ	3.6e-27	81.58	Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2	[more]
POF21_ARATH	1.0e-26	82.89	Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1	[more]
VIP1_ARATH	2.3e-26	85.14	Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1	[more]
RF2A_ORYSJ	4.0e-26	80.26	Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1	[more]
BZP02_ORYSJ	3.3e-12	53.52	Basic leucine zipper 2 OS=Oryza sativa subsp. japonica GN=BZIP02 PE=2 SV=1	[more]

BLAST of CU130250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Q8_CUCSA	1.0e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G324150 PE=4 SV=1	[more]
A0A0J8D151_BETVU	6.4e-31	92.41	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g011350 PE=4 S...	[more]
A0A0K9QGQ4_SPIOL	1.1e-30	89.87	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181430 PE=4 SV=1	[more]
F6GYV2_VITVI	1.4e-30	91.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0076g00330 PE=4 SV=...	[more]
A0A067L3F8_JATCU	1.8e-30	91.14	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25192 PE=4 SV=1	[more]

BLAST of CU130250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443774\|ref\|XP_004139652.1\|	4.1e-31	100.00	PREDICTED: transcription factor VIP1-like [Cucumis sativus]	[more]
gi\|659123141\|ref\|XP_008461512.1\|	4.1e-31	100.00	PREDICTED: transcription factor VIP1 [Cucumis melo]	[more]
gi\|731313494\|ref\|XP_010680531.1\|	2.5e-28	92.41	PREDICTED: transcription factor VIP1 [Beta vulgaris subsp. vulgaris]	[more]
gi\|902160153\|gb\|KNA06400.1\|	4.2e-28	89.87	hypothetical protein SOVF_181430 [Spinacia oleracea]	[more]
gi\|297735830\|emb\|CBI18550.3\|	5.5e-28	91.14	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G324150	Csa7G324150	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02N8F4J	FKNP3UI02N8F4J	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 21..75 score: 1.8
IPR004827	Basic-leucine zipper domain	SMART	SM00338	brlzneu	coord: 17..80 score: 4.5
IPR004827	Basic-leucine zipper domain	PROFILE	PS50217	BZIP	coord: 19..80 score: 1
None	No IPR available	unknown	Coil	Coil	coord: 44..64 scor
None	No IPR available	GENE3D	G3DSA:1.20.5.170		coord: 21..75 score: 3.7
None	No IPR available	PANTHER	PTHR13690	FAMILY NOT NAMED	coord: 2..80 score: 6.4
None	No IPR available	PANTHER	PTHR13690:SF86	TRANSCRIPTION FACTOR VIP1	coord: 2..80 score: 6.4
None	No IPR available	unknown	SSF57959	Leucine zipper domain	coord: 21..75 score: 1.75