CU129890 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU129890
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Protein of Unknown Function (DUF239)
Location	Chr7 : 16760600 .. 16761009 (-)
Sequence length	221

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTAGCCTCTCACAGATCTGGATTCTTGGAGGAACTTTTGGGCAAGATCTTAATAGTATTGAAGCTGGTTGGCAGGTCAGCCCTGATTTGTATGGAGATAATAACACTCGACTTTTCACTTATTGGACCAGTGATGCATATCAAGCAACTGGTTGTTATAATCTGCTGTGTTCTGGGTTTGTTCAAATCGATAATGAAATAGCAATGGGTGCCAGCATTTTT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU129890 vs. TrEMBL
Match: A0A0A0KBL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430210 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-35
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV
Sbjct: 203 SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 262

Query: 63  QIDNEIAMGASIF 122
           QI+NEIAMGASIF
Sbjct: 263 QINNEIAMGASIF 275

Query: 123  182
           
Sbjct: 323  275

Query: 183  222
           
Sbjct: 383  275

[Close]

BLAST of CU129890 vs. TrEMBL
Match: A0A0E0LMH9_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-34
Identity = 68/73 (93.15%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQ+WILGG+FGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF+
Sbjct: 160 SLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 219

Query: 63  QIDNEIAMGASIF 122
           QI+N+IAMGASIF
Sbjct: 220 QINNQIAMGASIF 232

Query: 123  182
           
Sbjct: 280  232

Query: 183  222
           
Sbjct: 340  232

[Close]

BLAST of CU129890 vs. TrEMBL
Match: U5GWR5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s23950g PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-34
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDN TRLFTYWTSDAYQATGCYNLLC+GF+
Sbjct: 221 SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNRTRLFTYWTSDAYQATGCYNLLCTGFI 280

Query: 63  QIDNEIAMGASIF 122
           QI+NEIAMGASIF
Sbjct: 281 QINNEIAMGASIF 293

Query: 123  182
           
Sbjct: 341  293

Query: 183  222
           
Sbjct: 401  293

[Close]

BLAST of CU129890 vs. TrEMBL
Match: B4G0L1_MAIZE (Uncharacterized protein OS=Zea mays GN=Zm.79923 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-34
Identity = 68/73 (93.15%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQ+WILGG+FGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF+
Sbjct: 213 SLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 272

Query: 63  QIDNEIAMGASIF 122
           QI+N+IAMGASIF
Sbjct: 273 QINNQIAMGASIF 285

Query: 123  182
           
Sbjct: 333  285

Query: 183  222
           
Sbjct: 393  285

[Close]

BLAST of CU129890 vs. TrEMBL
Match: A0A0D9X0M9_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-34
Identity = 68/73 (93.15%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQ+WILGG+FGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF+
Sbjct: 210 SLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 269

Query: 63  QIDNEIAMGASIF 122
           QI+N+IAMGASIF
Sbjct: 270 QINNQIAMGASIF 282

Query: 123  182
           
Sbjct: 330  282

Query: 183  222
           
Sbjct: 390  282

[Close]

BLAST of CU129890 vs. NCBI nr
Match: gi|449436230|ref|XP_004135896.1| (PREDICTED: uncharacterized protein LOC101218833 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-35
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV
Sbjct: 203 SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 262

Query: 63  QIDNEIAMGASIF 122
           QI+NEIAMGASIF
Sbjct: 263 QINNEIAMGASIF 275

Query: 123  182
           
Sbjct: 323  275

Query: 183  222
           
Sbjct: 383  275

[Close]

BLAST of CU129890 vs. NCBI nr
Match: gi|659122585|ref|XP_008461220.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499872 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-35
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV
Sbjct: 204 SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 263

Query: 63  QIDNEIAMGASIF 122
           QI+NEIAMGASIF
Sbjct: 264 QINNEIAMGASIF 276

Query: 123  182
           
Sbjct: 324  276

Query: 183  222
           
Sbjct: 384  276

[Close]

BLAST of CU129890 vs. NCBI nr
Match: gi|194707640|gb|ACF87904.1| (unknown [Zea mays])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 68/73 (93.15%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQ+WILGG+FGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF+
Sbjct: 213 SLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 272

Query: 63  QIDNEIAMGASIF 122
           QI+N+IAMGASIF
Sbjct: 273 QINNQIAMGASIF 285

Query: 123  182
           
Sbjct: 333  285

Query: 183  222
           
Sbjct: 393  285

[Close]

BLAST of CU129890 vs. NCBI nr
Match: gi|566150666|ref|XP_006369493.1| (hypothetical protein POPTR_0001s23950g [Populus trichocarpa])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDN TRLFTYWTSDAYQATGCYNLLC+GF+
Sbjct: 221 SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNRTRLFTYWTSDAYQATGCYNLLCTGFI 280

Query: 63  QIDNEIAMGASIF 122
           QI+NEIAMGASIF
Sbjct: 281 QINNEIAMGASIF 293

Query: 123  182
           
Sbjct: 341  293

Query: 183  222
           
Sbjct: 401  293

[Close]

BLAST of CU129890 vs. NCBI nr
Match: gi|1002861938|ref|XP_006657875.2| (PREDICTED: uncharacterized protein LOC102712828, partial [Oryza brachyantha])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 68/73 (93.15%), Postives = 73/73 (100.00%), Query Frame = 3


Query: 3   SLSQIWILGGTFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFV 62
           SLSQ+WILGG+FGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGF+
Sbjct: 166 SLSQLWILGGSFGQDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFI 225

Query: 63  QIDNEIAMGASIF 122
           QI+N+IAMGASIF
Sbjct: 226 QINNQIAMGASIF 238

Query: 123  182
           
Sbjct: 286  238

Query: 183  222
           
Sbjct: 346  238

The following BLAST results are available for this feature:

BLAST of CU129890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBL1_CUCSA	3.0e-35	98.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430210 PE=4 SV=1	[more]
A0A0E0LMH9_ORYPU	4.3e-34	93.15	Uncharacterized protein OS=Oryza punctata PE=4 SV=1	[more]
U5GWR5_POPTR	4.3e-34	94.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s23950g PE=4 SV=1	[more]
B4G0L1_MAIZE	4.3e-34	93.15	Uncharacterized protein OS=Zea mays GN=Zm.79923 PE=2 SV=1	[more]
A0A0D9X0M9_9ORYZ	4.3e-34	93.15	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CU129890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436230\|ref\|XP_004135896.1\|	1.9e-35	98.63	PREDICTED: uncharacterized protein LOC101218833 [Cucumis sativus]	[more]
gi\|659122585\|ref\|XP_008461220.1\|	1.9e-35	98.63	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499872 [Cucumis me...	[more]
gi\|194707640\|gb\|ACF87904.1\|	2.8e-34	93.15	unknown [Zea mays]	[more]
gi\|566150666\|ref\|XP_006369493.1\|	2.8e-34	94.52	hypothetical protein POPTR_0001s23950g [Populus trichocarpa]	[more]
gi\|1002861938\|ref\|XP_006657875.2\|	2.8e-34	93.15	PREDICTED: uncharacterized protein LOC102712828, partial [Oryza brachyantha]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004314	Neprosin

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G430210	Csa7G430210	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02N3QRL	FKNP3UI02N3QRL	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004314	Domain of unknown function DUF239	PFAM	PF03080	DUF239	coord: 2..73 score: 2.7
None	No IPR available	PANTHER	PTHR31589	FAMILY NOT NAMED	coord: 2..74 score: 8.0
None	No IPR available	PANTHER	PTHR31589:SF16	SUBFAMILY NOT NAMED	coord: 2..74 score: 8.0