CU129867 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU129867
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein
Location	Chr1 : 20156642 .. 20156871 (+)
Sequence length	229

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTGCGTGGCCGATATGTTTGGGCGTGCGGGTCGTCTGGATGAAGCATTTGAAACCATAAATAGTATGCCATTCCCTCCAGATGCTGGTGTTTGGGGAACACTACTCGGGGCCTGCCACATTCATGGAAATGTTGAGCTTGCGGAAGTGGCATCAAAACATCTATTTGATTTAGACCCTTTGAACTCTGGGTACTATGTATTGCTTGCTAATGTGCAGGCTGGGGCTGG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU129867 vs. Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-28
Identity = 57/75 (76.00%), Postives = 61/75 (81.33%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           CV D+FGRAGRL EA+ET+ SMPFPPDAGVWGTLLGAC +H NVELAEVAS  L DLDP 
Sbjct: 685 CVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPS 744

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVL++N  A A
Sbjct: 745 NSGYYVLISNAHANA 759

Query: 123  182
           
Sbjct: 805  759

Query: 183  228
           
Sbjct: 865  759

[Close]

BLAST of CU129867 vs. Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-19
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ DM+GRAG+L+ A + I SM   PDA +WG LL AC +HGNV+L ++AS+HLF+++P 
Sbjct: 593 CMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPE 652

Query: 63  NSGYYVLLANVQAGA 122
           + GY+VLL+N+ A A
Sbjct: 653 HVGYHVLLSNMYASA 667

Query: 123  182
           
Sbjct: 713  667

Query: 183  228
           
Sbjct: 773  667

HSP 2 Score: 36.6 bits (83), Expect = 1.4e-01
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 3


Query: 6   VADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACH-IHGNVELAEVASKHLFD 65
           +ADM+G+ GRL++A      +P   ++  W TL+ ACH  HG+ E A +  K + D
Sbjct: 492 LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI-ACHGFHGHGEKAVMLFKEMLD 545

Query: 66   125
           
Sbjct: 552  545

Query: 126  171
           
Sbjct: 612  545

[Close]

BLAST of CU129867 vs. Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.5e-19
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+ GR G+L EA++ I +MP  PDA VWGTLLGAC  HGNVE+AE+AS+ LF L+P 
Sbjct: 358 CMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPT 417

Query: 63  NSGYYVLLANVQA 122
           N G  V+++N+ A
Sbjct: 418 NPGNCVIMSNIYA 430

Query: 123  182
           
Sbjct: 478  430

Query: 183  222
           
Sbjct: 538  430

[Close]

BLAST of CU129867 vs. Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.9e-19
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+ GRAGRLDEA E I SMP  PD  VWG LLGAC IH NV++AE+A   + + +P 
Sbjct: 399 CLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPN 458

Query: 63  NSGYYVLLANV 122
           N GYYVL++N+
Sbjct: 459 NIGYYVLMSNI 469

Query: 123  182
           
Sbjct: 519  469

Query: 183  216
           
Sbjct: 579  469

[Close]

BLAST of CU129867 vs. Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-18
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+ GR GRL EA E I +M   P  GVWG LLGAC IH N E+AE+A++HLF+L+P 
Sbjct: 426 CMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPD 485

Query: 63  NSGYYVLLANVQAGA 122
             G Y+LL+NV A A
Sbjct: 486 IIGNYILLSNVYASA 500

Query: 123  182
           
Sbjct: 546  500

Query: 183  228
           
Sbjct: 606  500

[Close]

BLAST of CU129867 vs. TrEMBL
Match: A0A0A0LW16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G553510 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL
Sbjct: 690 CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 749

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLLANVQAGA
Sbjct: 750 NSGYYVLLANVQAGA 764

Query: 123  182
           
Sbjct: 810  764

Query: 183  228
           
Sbjct: 870  764

[Close]

BLAST of CU129867 vs. TrEMBL
Match: A0A067GD08_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003150mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-28
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+FGRAGRL++A ETINSMPF PDAGVWGTLLGAC +HGNVELAEVAS HLFDLDP 
Sbjct: 693 CMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLL+N+ A A
Sbjct: 753 NSGYYVLLSNIHADA 767

Query: 123  182
           
Sbjct: 813  767

Query: 183  228
           
Sbjct: 873  767

[Close]

BLAST of CU129867 vs. TrEMBL
Match: V4UIB9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014257mg PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-28
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+FGRAGRL++A ETINSMPF PDAGVWGTLLGAC +HGNVELAEVAS HLFDLDP 
Sbjct: 693 CMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLL+N+ A A
Sbjct: 753 NSGYYVLLSNIHADA 767

Query: 123  182
           
Sbjct: 813  767

Query: 183  228
           
Sbjct: 873  767

[Close]

BLAST of CU129867 vs. TrEMBL
Match: A0A061G6X6_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2 OS=Theobroma cacao GN=TCM_026989 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-27
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           CV D+FGRAGRL+EAFETI SMPF PDAGVWGTLLGAC  HGNVELAE AS+HLFDLDP 
Sbjct: 651 CVVDLFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQ 710

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLL+N+ A A
Sbjct: 711 NSGYYVLLSNLLADA 725

Query: 123  182
           
Sbjct: 771  725

Query: 183  228
           
Sbjct: 831  725

[Close]

BLAST of CU129867 vs. TrEMBL
Match: A0A061G867_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_026989 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-27
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           CV D+FGRAGRL+EAFETI SMPF PDAGVWGTLLGAC  HGNVELAE AS+HLFDLDP 
Sbjct: 679 CVVDLFGRAGRLNEAFETIKSMPFSPDAGVWGTLLGACRNHGNVELAEFASRHLFDLDPQ 738

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLL+N+ A A
Sbjct: 739 NSGYYVLLSNLLADA 753

Query: 123  182
           
Sbjct: 799  753

Query: 183  228
           
Sbjct: 859  753

[Close]

BLAST of CU129867 vs. NCBI nr
Match: gi|778662050|ref|XP_004135750.2| (PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 9.5e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL
Sbjct: 690 CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 749

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLLANVQAGA
Sbjct: 750 NSGYYVLLANVQAGA 764

Query: 123  182
           
Sbjct: 810  764

Query: 183  228
           
Sbjct: 870  764

[Close]

BLAST of CU129867 vs. NCBI nr
Match: gi|659118448|ref|XP_008459124.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 8.9e-36
Identity = 70/75 (93.33%), Postives = 75/75 (100.00%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+AD+FGRAGRLDEAFETINSMPFPPDAGVWGTLLGACH+HGNVELAEVASK+LF+LDPL
Sbjct: 688 CMADLFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHVHGNVELAEVASKYLFELDPL 747

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLLANVQAGA
Sbjct: 748 NSGYYVLLANVQAGA 762

Query: 123  182
           
Sbjct: 808  762

Query: 183  228
           
Sbjct: 868  762

[Close]

BLAST of CU129867 vs. NCBI nr
Match: gi|1009163141|ref|XP_015899806.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21300 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-30
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+FGRAGRL+EAFETI SMPF PDAGVWGTLLGAC +HGNVELAEVASK+LFDLDP 
Sbjct: 690 CMVDLFGRAGRLNEAFETIQSMPFSPDAGVWGTLLGACRVHGNVELAEVASKNLFDLDPQ 749

Query: 63  NSGYYVLLANVQAGA 122
           NSGYY+LL+N+ A A
Sbjct: 750 NSGYYILLSNINADA 764

Query: 123  182
           
Sbjct: 810  764

Query: 183  228
           
Sbjct: 870  764

[Close]

BLAST of CU129867 vs. NCBI nr
Match: gi|1009163145|ref|XP_015899808.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g21300 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-30
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+FGRAGRL+EAFETI SMPF PDAGVWGTLLGAC +HGNVELAEVASK+LFDLDP 
Sbjct: 656 CMVDLFGRAGRLNEAFETIQSMPFSPDAGVWGTLLGACRVHGNVELAEVASKNLFDLDPQ 715

Query: 63  NSGYYVLLANVQAGA 122
           NSGYY+LL+N+ A A
Sbjct: 716 NSGYYILLSNINADA 730

Query: 123  182
           
Sbjct: 776  730

Query: 183  228
           
Sbjct: 836  730

[Close]

BLAST of CU129867 vs. NCBI nr
Match: gi|641858851|gb|KDO77573.1| (hypothetical protein CISIN_1g003150mg [Citrus sinensis])

HSP 1 Score: 137.5 bits (345), Expect = 9.6e-30
Identity = 60/75 (80.00%), Postives = 67/75 (89.33%), Query Frame = 3


Query: 3   CVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPL 62
           C+ D+FGRAGRL++A ETINSMPF PDAGVWGTLLGAC +HGNVELAEVAS HLFDLDP 
Sbjct: 693 CMVDLFGRAGRLNKALETINSMPFAPDAGVWGTLLGACRVHGNVELAEVASSHLFDLDPQ 752

Query: 63  NSGYYVLLANVQAGA 122
           NSGYYVLL+N+ A A
Sbjct: 753 NSGYYVLLSNIHADA 767

Query: 123  182
           
Sbjct: 813  767

Query: 183  228
           
Sbjct: 873  767

The following BLAST results are available for this feature:

BLAST of CU129867 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP333_ARATH	3.1e-28	76.00	Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN...	[more]
PP348_ARATH	2.0e-19	53.33	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN...	[more]
PP371_ARATH	4.5e-19	56.16	Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN...	[more]
PP223_ARATH	9.9e-19	57.75	Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis th...	[more]
PP417_ARATH	1.7e-18	56.00	Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN...	[more]

BLAST of CU129867 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW16_CUCSA	2.1e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G553510 PE=4 SV=1	[more]
A0A067GD08_CITSI	2.1e-28	80.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003150mg PE=4 SV=1	[more]
V4UIB9_9ROSI	2.1e-28	80.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014257mg PE=4 SV=1	[more]
A0A061G6X6_THECC	1.1e-27	81.33	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2 OS=T...	[more]
A0A061G867_THECC	1.1e-27	81.33	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1 OS=T...	[more]

BLAST of CU129867 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662050\|ref\|XP_004135750.2\|	9.5e-38	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Cucumis s...	[more]
gi\|659118448\|ref\|XP_008459124.1\|	8.9e-36	93.33	PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Cucumis melo]	[more]
gi\|1009163141\|ref\|XP_015899806.1\|	7.3e-30	80.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21300 isoform X1 [Ziz...	[more]
gi\|1009163145\|ref\|XP_015899808.1\|	7.3e-30	80.00	PREDICTED: pentatricopeptide repeat-containing protein At4g21300 isoform X2 [Ziz...	[more]
gi\|641858851\|gb\|KDO77573.1\|	9.6e-30	80.00	hypothetical protein CISIN_1g003150mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G553510	Csa1G553510	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02N3ECG	FKNP3UI02N3ECG	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..77 score: 4.6
None	No IPR available	PANTHER	PTHR24015:SF388	SUBFAMILY NOT NAMED	coord: 2..77 score: 4.6