CU129658 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU129658
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing family protein
LocationChr6 : 17093728 .. 17093960 (-)
Sequence length233
The following sequences are available for this feature:

transcribed_cluster sequence

TTATTAATGGACTGTGTCAGATAGGCAATGCTACACAAGCTTGTGTACTGTTAGAAGAGATGATAGAGAAGGGAATTCGACCTTCTGGTGCCACATTCGGGAGGTTGAGACATTTTATTAATTAAGGAAGGCAGAAAAGATGTTCTAAAATTTCTGCAGGAGAAAATGAATTTACTAGTCAAGGAGCCATTATGTGATTGAGGAATCTTGGCTAAATGGAGCCATGCCACTTT
Library categoryESTs
fruit (8DPP) library1
BLAST of CU129658 vs. Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-08
Identity = 27/39 (69.23%), Postives = 28/39 (71.79%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+     +ACVLLEEMIE GIRPSG TFGRLR  +
Sbjct: 453 INGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLL 491

Query: 63  120
           
Sbjct: 513 491


HSP 2 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 23/28 (82.14%), Postives = 23/28 (82.14%), Query Frame = 1

Query: 115 LLIKEGRKDVLKFLQEKMNLLVKEPLCD 174
           LLIKE R+DVLKFL EKMN+LV EPLCD
Sbjct: 490 LLIKEEREDVLKFLNEKMNVLVNEPLCD 517

Query: 175 199
           
Sbjct: 550 517

BLAST of CU129658 vs. TrEMBL
Match: A0A0A0KH16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G381820 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRH +
Sbjct: 424 INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLL 462

Query: 63  120
           
Sbjct: 484 462

BLAST of CU129658 vs. TrEMBL
Match: A0A0A0KH16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G381820 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-06
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1

Query: 115 LLIKEGRKDVLKFLQEKMNLLVKEPLCD 174
           LLIKEGRKDVLKFLQEKMNLLVKEPLCD
Sbjct: 461 LLIKEGRKDVLKFLQEKMNLLVKEPLCD 488

Query: 175 199
           
Sbjct: 521 488


HSP 2 Score: 69.3 bits (168), Expect = 2.3e-09
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ G+A+QACVL EEMIEKGIRPSG TFGRLRH +
Sbjct: 374 INGLCEKGDASQACVLFEEMIEKGIRPSGVTFGRLRHLL 412

Query: 63  120
           
Sbjct: 434 412

BLAST of CU129658 vs. TrEMBL
Match: A0A067KM21_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12141 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-03
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = 1

Query: 115 LLIKEGRKDVLKFLQEKMNLLVKEPLCD 174
           LLIKEGR+DV+KFLQEK+N+LVKEPL D
Sbjct: 411 LLIKEGREDVVKFLQEKVNVLVKEPLWD 438

Query: 175 199
           
Sbjct: 471 438


HSP 2 Score: 67.8 bits (164), Expect = 6.7e-09
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ G+ TQACVLLEEMIEKGIRPSG TFGRLR  +
Sbjct: 413 INGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLL 451

Query: 63  120
           
Sbjct: 473 451

BLAST of CU129658 vs. TrEMBL
Match: B9H7I8_POPTR (Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0005s20430g PE=4 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 7.9e-02
Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 1

Query: 115 LLIKEGRKDVLKFLQEKMNLLVKEPL 174
           LLIKEGR+DVLKFLQ+K+N+LV +PL
Sbjct: 450 LLIKEGREDVLKFLQKKINVLVNDPL 475

Query: 175 193
           
Sbjct: 510 475


HSP 2 Score: 65.5 bits (158), Expect = 3.3e-08
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ G+ + ACV+LE+MIEKGIRPSG TFGRLRH +
Sbjct: 375 INGLCEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLL 413

Query: 63  120
           
Sbjct: 435 413

BLAST of CU129658 vs. TrEMBL
Match: B9S2U8_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0562410 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.3e-03
Identity = 21/28 (75.00%), Postives = 27/28 (96.43%), Query Frame = 1

Query: 115 LLIKEGRKDVLKFLQEKMNLLVKEPLCD 174
           LLIKEGR+DVL+FLQ+K+N+L+KEPL D
Sbjct: 412 LLIKEGREDVLEFLQQKINVLIKEPLWD 439

Query: 175 199
           
Sbjct: 472 439


HSP 2 Score: 63.9 bits (154), Expect = 9.6e-08
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ GN ++ACV LEEMIEKGIRP+G TFGRLR  +
Sbjct: 400 INGLCEKGNTSKACVFLEEMIEKGIRPAGVTFGRLRQLL 438

Query: 63  120
           
Sbjct: 460 438

BLAST of CU129658 vs. NCBI nr
Match: gi|778715586|ref|XP_011657423.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-13
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRH +
Sbjct: 424 INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLL 462

Query: 63  120
           
Sbjct: 484 462

BLAST of CU129658 vs. NCBI nr
Match: gi|659133516|ref|XP_008466765.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-13
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRH +
Sbjct: 424 INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHLL 462

Query: 63  120
           
Sbjct: 484 462

BLAST of CU129658 vs. NCBI nr
Match: gi|643723244|gb|KDP32849.1| (hypothetical protein JCGZ_12141 [Jatropha curcas])

HSP 1 Score: 71.2 bits (173), Expect = 8.6e-10
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ G+A+QACVL EEMIEKGIRPSG TFGRLRH +
Sbjct: 374 INGLCEKGDASQACVLFEEMIEKGIRPSGVTFGRLRHLL 412

Query: 63  120
           
Sbjct: 434 412

BLAST of CU129658 vs. NCBI nr
Match: gi|802637190|ref|XP_012078305.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial [Jatropha curcas])

HSP 1 Score: 71.2 bits (173), Expect = 8.6e-10
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ G+A+QACVL EEMIEKGIRPSG TFGRLRH +
Sbjct: 416 INGLCEKGDASQACVLFEEMIEKGIRPSGVTFGRLRHLL 454

Query: 63  120
           
Sbjct: 476 454

BLAST of CU129658 vs. NCBI nr
Match: gi|566172349|ref|XP_002307458.2| (pentatricopeptide repeat-containing family protein [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3

Query: 3   INGLCQIGNATQACVLLEEMIEKGIRPSGATFGRLRHFI 62
           INGLC+ G+ TQACVLLEEMIEKGIRPSG TFGRLR  +
Sbjct: 413 INGLCEKGDVTQACVLLEEMIEKGIRPSGVTFGRLRQLL 451

Query: 63  120
           
Sbjct: 473 451

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP129_ARATH4.7e-0869.23Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0KH16_CUCSA1.7e-1294.87Uncharacterized protein OS=Cucumis sativus GN=Csa_6G381820 PE=4 SV=1[more]
A0A0A0KH16_CUCSA3.1e-06100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G381820 PE=4 SV=1[more]
A0A067KM21_JATCU2.5e-0382.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12141 PE=4 SV=1[more]
B9H7I8_POPTR7.9e-0276.92Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POP... [more]
B9S2U8_RICCO9.3e-0375.00Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
Match NameE-valueIdentityDescription
gi|778715586|ref|XP_011657423.1|6.4e-1394.87PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial ... [more]
gi|659133516|ref|XP_008466765.1|6.4e-1394.87PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial ... [more]
gi|643723244|gb|KDP32849.1|8.6e-1079.49hypothetical protein JCGZ_12141 [Jatropha curcas][more]
gi|802637190|ref|XP_012078305.1|8.6e-1079.49PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial ... [more]
gi|566172349|ref|XP_002307458.2|2.5e-0979.49pentatricopeptide repeat-containing family protein [Populus trichocarpa][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G381820Csa6G381820gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02N0BTLFKNP3UI02N0BTLEST