CU129569 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU129569
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Receptor kinase
Location	Chr6 : 6032523 .. 6062916 (+)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TATGGTGAGCTGGCGAAGAGGAAGACACTGGACTGGGCCACTAGACTTTCAATTGCACTTGGTGCTGCCAGAGGTTTGACGTATCTTCACACATTTGCTGGCAGATGTGTTATACATAGAGATGTAAAATCAAGCAATATACTTATGGACCATAGCATGTCTGCCAAGGTTGCAGTATTT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU129569 vs. Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-21
Identity = 51/60 (85.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRK LDW TRLSIALGAARGL YLHTF GR VIHRDVKSSNIL+DHSM AKVA F
Sbjct: 681 YGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADF 740

Query: 61   120
           
Sbjct: 741  740

Query: 121  180
           
Sbjct: 801  740

[Close]

BLAST of CU129569 vs. Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-20
Identity = 49/60 (81.67%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE +KRK LDW TRLSIALGAARGL YLHTF GR VIHRDVKSSNIL+D SM AKVA F
Sbjct: 682 YGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADF 741

Query: 61   120
           
Sbjct: 742  741

Query: 121  180
           
Sbjct: 802  741

[Close]

BLAST of CU129569 vs. Swiss-Prot
Match: Y1853_ARATH (Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana GN=At1g78530 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-12
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 19  RKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 78
           RK LDWA+R  IA+GAARG++YLH      +IHRD+KSSNIL+DH+M A+V+ F
Sbjct: 163 RKALDWASRYRIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDHNMEARVSDF 216

Query: 79   138
           
Sbjct: 223  216

Query: 139  181
           
Sbjct: 283  216

[Close]

BLAST of CU129569 vs. Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YG  +KR +L+W +RL +A+ AA+GL YLH  +   +IHRDVKSSNIL+D  M+AKV+ F
Sbjct: 692 YGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDF 751

Query: 61   120
           
Sbjct: 752  751

Query: 121  180
           
Sbjct: 812  751

[Close]

BLAST of CU129569 vs. Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-11
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 16  KRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 75
           K+KTLDW TRL IA GAA+GL YLH      +IHRDVKSSNIL+D  + A++  F
Sbjct: 738 KKKTLDWDTRLKIAYGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKDLEARLTDF 792

Query: 76   135
           
Sbjct: 798  792

Query: 136  181
           
Sbjct: 858  792

[Close]

BLAST of CU129569 vs. TrEMBL
Match: A0A0A0KDC4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088150 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVA F
Sbjct: 703 YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVADF 762

Query: 61   120
           
Sbjct: 763  762

Query: 121  180
           
Sbjct: 823  762

[Close]

BLAST of CU129569 vs. TrEMBL
Match: B2G281_POPTR (Symbiosis receptor-like kinase OS=Populus trichocarpa GN=symrk PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-22
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLTYLHTF+GRC+IHRDVKSSNIL+DHSM+AKV  F
Sbjct: 677 YGEAAKRKTLDWPTRLSIALGAARGLTYLHTFSGRCIIHRDVKSSNILLDHSMNAKVTDF 736

Query: 61   120
           
Sbjct: 737  736

Query: 121  180
           
Sbjct: 797  736

[Close]

BLAST of CU129569 vs. TrEMBL
Match: U5GB09_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14950g PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.0e-22
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLTYLHTF+GRC+IHRDVKSSNIL+DHSM+AKV  F
Sbjct: 677 YGEAAKRKTLDWPTRLSIALGAARGLTYLHTFSGRCIIHRDVKSSNILLDHSMNAKVTDF 736

Query: 61   120
           
Sbjct: 737  736

Query: 121  180
           
Sbjct: 797  736

[Close]

BLAST of CU129569 vs. TrEMBL
Match: A0A067K7E8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12627 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLT+LHTFAGRC+IHRDVKSSNIL+D SM+AKVA F
Sbjct: 683 YGEAAKRKTLDWPTRLSIALGAARGLTHLHTFAGRCIIHRDVKSSNILLDQSMNAKVADF 742

Query: 61   120
           
Sbjct: 743  742

Query: 121  180
           
Sbjct: 803  742

[Close]

BLAST of CU129569 vs. TrEMBL
Match: Q2TE70_ALNGL (Symbiosis receptor-like kinase OS=Alnus glutinosa GN=SYMRK PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-20
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLTYLHT A RC+IHRDVKSSNIL+DHSM AKVA F
Sbjct: 695 YGEPAKRKTLDWPTRLSIALGAARGLTYLHTNANRCIIHRDVKSSNILLDHSMCAKVADF 754

Query: 61   120
           
Sbjct: 755  754

Query: 121  180
           
Sbjct: 815  754

[Close]

BLAST of CU129569 vs. NCBI nr
Match: gi|778722051|ref|XP_011658393.1| (PREDICTED: nodulation receptor kinase [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-24
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVA F
Sbjct: 703 YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVADF 762

Query: 61   120
           
Sbjct: 763  762

Query: 121  180
           
Sbjct: 823  762

[Close]

BLAST of CU129569 vs. NCBI nr
Match: gi|659119973|ref|XP_008459943.1| (PREDICTED: nodulation receptor kinase-like [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGELAKRKTLDWATR+SIALGAARGLTYLHTFAGR VIHRDVKSSNIL+DHSMSAKVA F
Sbjct: 697 YGELAKRKTLDWATRVSIALGAARGLTYLHTFAGRSVIHRDVKSSNILLDHSMSAKVADF 756

Query: 61   120
           
Sbjct: 757  756

Query: 121  180
           
Sbjct: 817  756

[Close]

BLAST of CU129569 vs. NCBI nr
Match: gi|359495806|ref|XP_002272055.2| (PREDICTED: nodulation receptor kinase-like [Vitis vinifera])

HSP 1 Score: 110.9 bits (276), Expect = 7.7e-22
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLTYLHTFAGR VIHRDVKSSNILMDH+MSAKVA F
Sbjct: 693 YGEAAKRKTLDWPTRLSIALGAARGLTYLHTFAGRSVIHRDVKSSNILMDHNMSAKVADF 752

Query: 61   120
           
Sbjct: 753  752

Query: 121  180
           
Sbjct: 813  752

[Close]

BLAST of CU129569 vs. NCBI nr
Match: gi|183579825|emb|CAO99188.1| (symbiosis receptor-like kinase [Populus trichocarpa])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLTYLHTF+GRC+IHRDVKSSNIL+DHSM+AKV  F
Sbjct: 677 YGEAAKRKTLDWPTRLSIALGAARGLTYLHTFSGRCIIHRDVKSSNILLDHSMNAKVTDF 736

Query: 61   120
           
Sbjct: 737  736

Query: 121  180
           
Sbjct: 797  736

[Close]

BLAST of CU129569 vs. NCBI nr
Match: gi|566181400|ref|XP_006380830.1| (hypothetical protein POPTR_0007s14950g [Populus trichocarpa])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1   YGELAKRKTLDWATRLSIALGAARGLTYLHTFAGRCVIHRDVKSSNILMDHSMSAKVAVF 60
           YGE AKRKTLDW TRLSIALGAARGLTYLHTF+GRC+IHRDVKSSNIL+DHSM+AKV  F
Sbjct: 677 YGEAAKRKTLDWPTRLSIALGAARGLTYLHTFSGRCIIHRDVKSSNILLDHSMNAKVTDF 736

Query: 61   120
           
Sbjct: 737  736

Query: 121  180
           
Sbjct: 797  736

The following BLAST results are available for this feature:

BLAST of CU129569 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NORK_PEA	2.2e-21	85.00	Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1	[more]
NORK_MEDTR	2.5e-20	81.67	Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2	[more]
Y1853_ARATH	4.2e-12	61.11	Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana ...	[more]
Y5487_ARATH	9.4e-12	55.00	Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidop...	[more]
ERECT_ARATH	2.1e-11	60.00	LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana...	[more]

BLAST of CU129569 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDC4_CUCSA	1.2e-24	98.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G088150 PE=3 SV=1	[more]
B2G281_POPTR	7.0e-22	86.67	Symbiosis receptor-like kinase OS=Populus trichocarpa GN=symrk PE=2 SV=1	[more]
U5GB09_POPTR	7.0e-22	86.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14950g PE=3 SV=1	[more]
A0A067K7E8_JATCU	3.5e-21	86.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12627 PE=3 SV=1	[more]
Q2TE70_ALNGL	1.7e-20	86.67	Symbiosis receptor-like kinase OS=Alnus glutinosa GN=SYMRK PE=2 SV=1	[more]

BLAST of CU129569 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722051\|ref\|XP_011658393.1\|	1.7e-24	98.33	PREDICTED: nodulation receptor kinase [Cucumis sativus]	[more]
gi\|659119973\|ref\|XP_008459943.1\|	1.2e-22	93.33	PREDICTED: nodulation receptor kinase-like [Cucumis melo]	[more]
gi\|359495806\|ref\|XP_002272055.2\|	7.7e-22	91.67	PREDICTED: nodulation receptor kinase-like [Vitis vinifera]	[more]
gi\|183579825\|emb\|CAO99188.1\|	1.0e-21	86.67	symbiosis receptor-like kinase [Populus trichocarpa]	[more]
gi\|566181400\|ref\|XP_006380830.1\|	1.0e-21	86.67	hypothetical protein POPTR_0007s14950g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR008271	Ser/Thr_kinase_AS
IPR011009	Kinase-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G088130	Csa6G088130	gene
Csa6G088150	Csa6G088150	gene
Csa6G088110	Csa6G088110	gene
Csa6G088120	Csa6G088120	gene
Csa6G088140	Csa6G088140	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MZ1GB	FKNP3UI02MZ1GB	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 8..58 score: 3.
IPR000719	Protein kinase domain	PROFILE	PS50011	PROTEIN_KINASE_DOM	coord: 1..60 score: 13
IPR008271	Serine/threonine-protein kinase, active site	PROSITE	PS00108	PROTEIN_KINASE_ST	coord: 37..49 scor
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 6..58 score: 4.24
None	No IPR available	GENE3D	G3DSA:1.10.510.10		coord: 5..58 score: 3.5
None	No IPR available	PANTHER	PTHR27003	FAMILY NOT NAMED	coord: 1..60 score: 1.7
None	No IPR available	PANTHER	PTHR27003:SF71	LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN	coord: 1..60 score: 1.7