CU129216 (transcribed_cluster) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
AATAAAGAACGAACTTAACTGGTCGGATTGGCAGACCAAGGAAGTTAAGCTCTAGAATTGGGCTTGTTAACGCTCTTGGTCTCGTGTGGTTATATCTACAGGCATTTCCAAACTTACAACCCCCAGTCCTCAAGTAAAACTGCAAATGGCTCATGAAGTGTAACAGTTAACTGATATCAGTAAATCAGGCACATCACAAAAGAAAATAAATATTTCACCATCTTGTAGTGTAAAAGAGAATTCAAGAATAAGAAAACTCCGTTCAAG
BLAST of CU129216 vs. Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 8.4e-09 Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = -3
HSP 2 Score: 38.5 bits (88), Expect = 4.4e-02 Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = -3
BLAST of CU129216 vs. Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2) HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07 Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = -3
HSP 2 Score: 37.7 bits (86), Expect = 7.6e-02 Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = -3
BLAST of CU129216 vs. Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 7.8e-07 Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = -3
HSP 2 Score: 51.2 bits (121), Expect = 6.6e-06 Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = -3
HSP 3 Score: 35.0 bits (79), Expect = 4.9e-01 Identity = 13/32 (40.62%), Postives = 17/32 (53.12%), Query Frame = -3
BLAST of CU129216 vs. Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06 Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = -3
HSP 2 Score: 50.1 bits (118), Expect = 1.5e-05 Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = -3
HSP 3 Score: 39.7 bits (91), Expect = 2.0e-02 Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = -3
HSP 4 Score: 35.0 bits (79), Expect = 4.9e-01 Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = -3
BLAST of CU129216 vs. Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2) HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06 Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = -3
HSP 2 Score: 33.9 bits (76), Expect = 1.1e+00 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = -3
BLAST of CU129216 vs. TrEMBL
Match: A0A0A0LU93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15 Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -3
BLAST of CU129216 vs. TrEMBL
Match: E5GBX3_CUCME (Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 9.3e-15 Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = -3
BLAST of CU129216 vs. TrEMBL
Match: V4VKL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11 Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3
BLAST of CU129216 vs. TrEMBL
Match: V4VKL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1) HSP 1 Score: 30.8 bits (68), Expect = 1.0e+03 Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = -3
HSP 2 Score: 74.7 bits (182), Expect = 6.2e-11 Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3
BLAST of CU129216 vs. TrEMBL
Match: V4TNL8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11 Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3
BLAST of CU129216 vs. NCBI nr
Match: gi|778657996|ref|XP_011651936.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sativus]) HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16 Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -3
BLAST of CU129216 vs. NCBI nr
Match: gi|449469596|ref|XP_004152505.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sativus]) HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16 Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -3
BLAST of CU129216 vs. NCBI nr
Match: gi|778657993|ref|XP_011651926.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sativus]) HSP 1 Score: 91.3 bits (225), Expect = 9.2e-16 Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3
BLAST of CU129216 vs. NCBI nr
Match: gi|659067397|ref|XP_008439243.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo]) HSP 1 Score: 89.0 bits (219), Expect = 4.6e-15 Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = -3
BLAST of CU129216 vs. NCBI nr
Match: gi|568846208|ref|XP_006476949.1| (PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 [Citrus sinensis]) HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11 Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3
The following BLAST results are available for this feature:
This transcribed_cluster is associated with the following gene feature(s):
The following EST feature(s) are a part of this transcribed_cluster:
|