CU129216 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU129216
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5727623 .. 5727890 (-)
Sequence length267
The following sequences are available for this feature:

transcribed_cluster sequence

AATAAAGAACGAACTTAACTGGTCGGATTGGCAGACCAAGGAAGTTAAGCTCTAGAATTGGGCTTGTTAACGCTCTTGGTCTCGTGTGGTTATATCTACAGGCATTTCCAAACTTACAACCCCCAGTCCTCAAGTAAAACTGCAAATGGCTCATGAAGTGTAACAGTTAACTGATATCAGTAAATCAGGCACATCACAAAAGAAAATAAATATTTCACCATCTTGTAGTGTAAAAGAGAATTCAAGAATAAGAAAACTCCGTTCAAG
Library categoryESTs
fruit (8DPP) library1
BLAST of CU129216 vs. Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-09
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           ++Y RTGGCK+G  CR+NHT P++  +   ELNFLGLP+RP
Sbjct: 165 KYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRP 205

Query: 80  139
           
Sbjct: 225 205

Query: 140 143
           
Sbjct: 285 205


HSP 2 Score: 38.5 bits (88), Expect = 4.4e-02
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = -3

Query: 74  FYLRTGGCKFGNACRYNHTRPR 133
           FY+RTG CKFG++C++NH   R
Sbjct: 118 FYMRTGSCKFGSSCKFNHPLAR 139

Query: 134 140
           
Sbjct: 178 139

BLAST of CU129216 vs. Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           ++Y RTGGCK+G +CR++H +     + + ELNFLGLPIRP
Sbjct: 155 KYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRP 195

Query: 80  139
           
Sbjct: 215 195

Query: 140 143
           
Sbjct: 275 195


HSP 2 Score: 37.7 bits (86), Expect = 7.6e-02
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = -3

Query: 68  FYLRTGGCKFGNACRYNHTRPRAL 127
           FY+RTG CK+G++C++NH   R L
Sbjct: 109 FYMRTGSCKYGSSCKFNHPVRRKL 132

Query: 128 140
           
Sbjct: 169 132

BLAST of CU129216 vs. Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.8e-07
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           QFY++TG CKFG  C+++H + R + +P   LN LGLP+RP
Sbjct: 325 QFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRP 365

Query: 80  139
           
Sbjct: 385 365

Query: 140 143
           
Sbjct: 445 365


HSP 2 Score: 51.2 bits (121), Expect = 6.6e-06
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           Q+YL+TG CKFG  C+++H R +A  +  ++LN LG P+RP
Sbjct: 118 QYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRP 158

Query: 80  139
           
Sbjct: 178 158

Query: 140 143
           
Sbjct: 238 158


HSP 3 Score: 35.0 bits (79), Expect = 4.9e-01
Identity = 13/32 (40.62%), Postives = 17/32 (53.12%), Query Frame = -3

Query: 44  FYLRTGGCKFGNACRYNHTRPRALTSPILELN 103
           +Y+RTG C+FG  C++NH   R L      +N
Sbjct: 74  YYMRTGLCRFGMTCKFNHPPNRKLAVAAARMN 105

Query: 104 140
           
Sbjct: 134 105

BLAST of CU129216 vs. Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           QFY++TG CKFG  CR++H R R + +P   L+ +GLP+RP
Sbjct: 285 QFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRP 325

Query: 80  139
           
Sbjct: 345 325

Query: 140 143
           
Sbjct: 405 325


HSP 2 Score: 50.1 bits (118), Expect = 1.5e-05
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           Q+YL+TG CKFG  CR++H + +A  +  + LN LG P+RP
Sbjct: 82  QYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRP 122

Query: 80  139
           
Sbjct: 142 122

Query: 140 143
           
Sbjct: 202 122


HSP 3 Score: 39.7 bits (91), Expect = 2.0e-02
Identity = 14/25 (56.00%), Postives = 17/25 (68.00%), Query Frame = -3

Query: 77  SHLQFYLRTGGCKFGNACRYNHTRP 136
           S   +YLRTG CKFGN C+++H +P
Sbjct: 125 SERAYYLRTGQCKFGNTCKFHHPQP 149

Query: 137 152
           
Sbjct: 185 149


HSP 4 Score: 35.0 bits (79), Expect = 4.9e-01
Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = -3

Query: 68  FYLRTGGCKFGNACRYNHTRPRAL 127
           +Y+RTG C+FG  CR+NH   R L
Sbjct: 38  YYIRTGLCRFGATCRFNHPPNRKL 61

Query: 128 140
           
Sbjct: 98  61

BLAST of CU129216 vs. Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           QFY++TG CKFG  C+++H + R + +P   L+ LGLP+RP
Sbjct: 316 QFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRP 356

Query: 80  139
           
Sbjct: 376 356

Query: 140 143
           
Sbjct: 436 356


HSP 2 Score: 33.9 bits (76), Expect = 1.1e+00
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = -3

Query: 68  FYLRTGGCKFGNACRYNHTRPRAL 127
           +Y+RTG C+FG  C++NH   R +
Sbjct: 64  YYMRTGLCRFGMTCKFNHPADRKM 87

Query: 128 140
           
Sbjct: 124 87

BLAST of CU129216 vs. TrEMBL
Match: A0A0A0LU93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           +FYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP
Sbjct: 193 KFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 233

Query: 80  139
           
Sbjct: 253 233

Query: 140 143
           
Sbjct: 313 233

BLAST of CU129216 vs. TrEMBL
Match: E5GBX3_CUCME (Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.3e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           +FYLRTGGCKFGNACRYNHTR RALTSPILELNFLGLPIRP
Sbjct: 195 KFYLRTGGCKFGNACRYNHTRSRALTSPILELNFLGLPIRP 235

Query: 80  139
           
Sbjct: 255 235

Query: 140 143
           
Sbjct: 315 235

BLAST of CU129216 vs. TrEMBL
Match: V4VKL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           ++YLRTGGCKFG ACR+NHTR ++  +P+LELNFLGLPIRP
Sbjct: 188 KYYLRTGGCKFGKACRFNHTRAKSTVAPVLELNFLGLPIRP 228

Query: 80  139
           
Sbjct: 248 228

Query: 140 143
           
Sbjct: 308 228

BLAST of CU129216 vs. TrEMBL
Match: V4VKL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1)

HSP 1 Score: 30.8 bits (68), Expect = 1.0e+03
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = -3

Query: 86  FYLRTGGCKFGNACRYNH 140
           +Y R G CKFG AC+Y+H
Sbjct: 417 YYSRYGICKFGPACKYDH 434


HSP 2 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           ++YLRTGGCKFG ACR+NHTR ++  +P+LELNFLGLPIRP
Sbjct: 188 KYYLRTGGCKFGKACRFNHTRAKSTVAPVLELNFLGLPIRP 228

Query: 80  139
           
Sbjct: 248 228

Query: 140 143
           
Sbjct: 308 228

BLAST of CU129216 vs. TrEMBL
Match: V4TNL8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           ++YLRTGGCKFG ACR+NHTR ++  +P+LELNFLGLPIRP
Sbjct: 188 KYYLRTGGCKFGKACRFNHTRAKSTVAPVLELNFLGLPIRP 228

Query: 80  139
           
Sbjct: 248 228

Query: 140 143
           
Sbjct: 308 228

BLAST of CU129216 vs. NCBI nr
Match: gi|778657996|ref|XP_011651936.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP
Sbjct: 171 QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 211

Query: 80  139
           
Sbjct: 231 211

Query: 140 143
           
Sbjct: 291 211

BLAST of CU129216 vs. NCBI nr
Match: gi|449469596|ref|XP_004152505.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 5.4e-16
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           +FYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP
Sbjct: 193 KFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 233

Query: 80  139
           
Sbjct: 253 233

Query: 140 143
           
Sbjct: 313 233

BLAST of CU129216 vs. NCBI nr
Match: gi|778657993|ref|XP_011651926.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3

Query: 20  FYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           FYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP
Sbjct: 198 FYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 237

Query: 80  139
           
Sbjct: 258 237

BLAST of CU129216 vs. NCBI nr
Match: gi|659067397|ref|XP_008439243.1| (PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           +FYLRTGGCKFGNACRYNHTR RALTSPILELNFLGLPIRP
Sbjct: 195 KFYLRTGGCKFGNACRYNHTRSRALTSPILELNFLGLPIRP 235

Query: 80  139
           
Sbjct: 255 235

Query: 140 143
           
Sbjct: 315 235

BLAST of CU129216 vs. NCBI nr
Match: gi|568846208|ref|XP_006476949.1| (PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 [Citrus sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = -3

Query: 20  QFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRP 79
           ++YLRTGGCKFG ACR+NHTR ++  +P+LELNFLGLPIRP
Sbjct: 186 KYYLRTGGCKFGKACRFNHTRAKSTVAPVLELNFLGLPIRP 226

Query: 80  139
           
Sbjct: 246 226

Query: 140 143
           
Sbjct: 306 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
C3H43_ARATH8.4e-0958.54Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g484... [more]
C3H67_ARATH1.2e-0753.66Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g632... [more]
C3H66_ORYSJ7.8e-0751.22Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN... [more]
ZFNL_PEA1.7e-0651.22Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1[more]
C3H63_ORYSJ2.3e-0648.78Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN... [more]
Match NameE-valueIdentityDescription
A0A0A0LU93_CUCSA1.1e-1597.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050060 PE=4 SV=1[more]
E5GBX3_CUCME9.3e-1595.12Nucleic acid binding protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
V4VKL3_9ROSI6.2e-1173.17Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1[more]
V4VKL3_9ROSI1.0e+0361.11Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1[more]
V4TNL8_9ROSI6.2e-1173.17Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019979mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778657996|ref|XP_011651936.1|1.9e-16100.00PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X3 [Cucumis sat... [more]
gi|449469596|ref|XP_004152505.1|5.4e-1697.56PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2 [Cucumis sat... [more]
gi|778657993|ref|XP_011651926.1|9.2e-16100.00PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1 [Cucumis sat... [more]
gi|659067397|ref|XP_008439243.1|4.6e-1595.12PREDICTED: zinc finger CCCH domain-containing protein 43 [Cucumis melo][more]
gi|568846208|ref|XP_006476949.1|3.1e-1173.17PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 [Citrus sine... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G050060Csa1G050060gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MU9SZFKNP3UI02MU9SZEST