CU128800 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU128800
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 13488709 .. 13488954 (-)
Sequence length254
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCGGCCACGACCATCGACCTTACTGTGGCGGTCTTTAGAAGGGGGTTTTTTGACGGGTAAGGGGGTGGCGGCATTGTTGGAAGATTGATTCCCCTGTATTTGATGTCTGTGTTGTTGATGAGAAGGGTCAATTATGGCGCCATTGTTGTTGTTGACGCCGTCAGAAGCAGACATGGTTAAGAGAGAAGGGATGTTGGAGGAGGAGGAGGAGGAGGAGAATTGAAGGTGTAACAATGGAGGATTCCCCGGCCG
Library categoryESTs
fruit (8DPP) library1
BLAST of CU128800 vs. TrEMBL
Match: A0A0A0KMY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G352090 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = -1

Query: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR
Sbjct: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 58

Query: 63  122
           
Sbjct: 63  58

Query: 123 171
           
Sbjct: 123 58

BLAST of CU128800 vs. TrEMBL
Match: A0A068U7Q1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018562001 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = -1

Query: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           ++DG  N NGAIIDPS        Q   SSNN +  L VKKPP+KDRHSKVDGRGR
Sbjct: 5   SADGNGNGNGAIIDPS--------QRVTSSNNGSAALAVKKPPAKDRHSKVDGRGR 52

Query: 63  122
           
Sbjct: 65  52

Query: 123 171
           
Sbjct: 125 52

BLAST of CU128800 vs. TrEMBL
Match: M4CZM0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-06
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = -1

Query: 3   SDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           +DGV  +NG++I+   QQ + Q Q  + S++ A  L VKKPP+KDRHSKVDGRGR
Sbjct: 4   NDGVMISNGSLIEHQRQQQQQQQQNLKQSSDGA--LVVKKPPAKDRHSKVDGRGR 56

Query: 63  122
           
Sbjct: 64  56

Query: 123 168
           
Sbjct: 124 56

BLAST of CU128800 vs. NCBI nr
Match: gi|449464308|ref|XP_004149871.1| (PREDICTED: transcription factor TCP21 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = -1

Query: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR
Sbjct: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 58

Query: 63  122
           
Sbjct: 63  58

Query: 123 171
           
Sbjct: 123 58

BLAST of CU128800 vs. NCBI nr
Match: gi|659126302|ref|XP_008463113.1| (PREDICTED: transcription factor TCP21-like [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 8.5e-19
Identity = 50/56 (89.29%), Postives = 50/56 (89.29%), Query Frame = -1

Query: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           ASDGVNNNN AIIDPSHQQH HQIQ NQSSNNA TPLPVKK P KDRHSKVDGRGR
Sbjct: 3   ASDGVNNNNAAIIDPSHQQHIHQIQANQSSNNATTPLPVKKTPYKDRHSKVDGRGR 58

Query: 63  122
           
Sbjct: 63  58

Query: 123 171
           
Sbjct: 123 58

BLAST of CU128800 vs. NCBI nr
Match: gi|659126867|ref|XP_008463404.1| (PREDICTED: transcription factor TCP21-like [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-17
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = -1

Query: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGN-QSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           ASD VNNNN AII+ SHQQH H+I GN QSSNNAATPLP+KKPPSKDRHSKVDGRGR
Sbjct: 3   ASDAVNNNNAAIIEHSHQQHTHRIHGNNQSSNNAATPLPLKKPPSKDRHSKVDGRGR 59

Query: 63  122
           
Sbjct: 63  59

Query: 123 171
           
Sbjct: 123 59

BLAST of CU128800 vs. NCBI nr
Match: gi|661891660|emb|CDP04585.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = -1

Query: 3   ASDGVNNNNGAIIDPSHQQHRHQIQGNQSSNNAATPLPVKKPPSKDRHSKVDGRGR 62
           ++DG  N NGAIIDPS        Q   SSNN +  L VKKPP+KDRHSKVDGRGR
Sbjct: 5   SADGNGNGNGAIIDPS--------QRVTSSNNGSAALAVKKPPAKDRHSKVDGRGR 52

Query: 63  122
           
Sbjct: 65  52

Query: 123 171
           
Sbjct: 125 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KMY3_CUCSA9.4e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G352090 PE=4 SV=1[more]
A0A068U7Q1_COFCA8.0e-0860.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018562001 PE=4 SV=1[more]
M4CZM0_BRARP3.4e-0654.55Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449464308|ref|XP_004149871.1|3.3e-23100.00PREDICTED: transcription factor TCP21 [Cucumis sativus][more]
gi|659126302|ref|XP_008463113.1|8.5e-1989.29PREDICTED: transcription factor TCP21-like [Cucumis melo][more]
gi|659126867|ref|XP_008463404.1|8.0e-1784.21PREDICTED: transcription factor TCP21-like [Cucumis melo][more]
gi|661891660|emb|CDP04585.1|1.7e-0660.71unnamed protein product [Coffea canephora][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR017887TF_TCP_subgr

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa5G352090Csa5G352090gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MOO01FKNP3UI02MOO01EST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017887Transcription factor TCP subgroupPROFILEPS51369TCPcoord: 72..85
score: 9