CU128654 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU128654
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	F-box protein family
Location	Chr1 : 2922277 .. 2922538 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCCACCTCTTGTTGTATTGACCACTTTGATCGTCTTCCTGATTCCCTTCTTCTTCTTATTTTCAACAAGATTGGTGACGTCAAGGCTCTTGGCCGATGCTGTGTTGTTTCTCGAAGGTTTCACTGCCTTGTGCCTCAAGTGGAAAACGTTGTTGTTCGCGTGGATTGTGTTATTTCTGATGATGAATCCTCTTCTTCTTCTTCTTCGTCTGGTAAATCTCGTGGCCCTTTTTTTAATATTTTTCGCTTTGTATTTGGTGG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU128654 vs. Swiss-Prot
Match: FB285_ARATH (F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-26
Identity = 60/84 (71.43%), Postives = 62/84 (73.81%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDE--- 76
           IDHFD LPDS+LLL+FNKIGDVKALGRCCVVSRRFH LVPQV+NVVVRVDCVISDD+   
Sbjct: 24  IDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSS 83

Query: 77  XXXXXXXXGKSRGPFFNIFRFVFG 136
                   G S G F  IFR V G
Sbjct: 84  LSSIKSRSGSSAGSFSAIFRLVVG 107

Query: 137  196
           
Sbjct: 144  107

Query: 197  256
           
Sbjct: 204  107

Query: 257  260
           
Sbjct: 264  107

[Close]

BLAST of CU128654 vs. Swiss-Prot
Match: FB237_ARATH (F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-23
Identity = 56/83 (67.47%), Postives = 59/83 (71.08%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFD LPDS+LLLIFN IGDVKALGRC VVS+RFH L+PQVENV VRVDCVISDD+   
Sbjct: 22  IDHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSS 81

Query: 77  XXXXXGKS---RGPFFNIFRFVF 136
                 +S     PF  IFR VF
Sbjct: 82  LLSDKPRSASAASPFSAIFRLVF 104

Query: 137  196
           
Sbjct: 142  104

Query: 197  256
           
Sbjct: 202  104

[Close]

BLAST of CU128654 vs. Swiss-Prot
Match: FB19_ARATH (F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-20
Identity = 53/91 (58.24%), Postives = 58/91 (63.74%), Query Frame = 2


Query: 20  DHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDE---- 79
           DHFD LPDSLLLLIF+K+ DVK LGRCC+VSRRFH LVP VENV+VRVDCVISDD+    
Sbjct: 24  DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSS 83

Query: 80  --------XXXXXXXXGKSRGPFFNIFRFVF 139
                           G + G F  +FR VF
Sbjct: 84  DENHRFSLNTASISDAGGAGGSFSALFRLVF 114

Query: 140  199
           
Sbjct: 144  114

Query: 200  257
           
Sbjct: 204  114

[Close]

BLAST of CU128654 vs. Swiss-Prot
Match: FB303_ARATH (F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 76
           +D FD LPD +++ I NK+GDVK L RC  +S+RF+ LVPQ E++ +R+D  +SD
Sbjct: 1   MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVSD 55

Query: 77   136
           
Sbjct: 61   55

Query: 137  182
           
Sbjct: 121  55

[Close]

BLAST of CU128654 vs. Swiss-Prot
Match: FB91_ARATH (F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDE 76
           +D FD +PD +++ I N++GDVK L RC  VS+RF+ L  Q E++++++D ++   E
Sbjct: 1   MDAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATE 57

Query: 77   136
           
Sbjct: 61   57

Query: 137  188
           
Sbjct: 121  57

[Close]

BLAST of CU128654 vs. TrEMBL
Match: A0A0A0LSD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025900 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-37
Identity = 78/86 (90.70%), Postives = 78/86 (90.70%), Query Frame = 2


Query: 2   STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 61
           STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD
Sbjct: 29  STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 88

Query: 62  DEXXXXXXXXGKSRGPFFNIFRFVFG 121
           DE        GKSRGPFFNIFRFVFG
Sbjct: 89  DESSSSSSSSGKSRGPFFNIFRFVFG 114

Query: 122  181
           
Sbjct: 149  114

Query: 182  241
           
Sbjct: 209  114

Query: 242  260
           
Sbjct: 269  114

[Close]

BLAST of CU128654 vs. TrEMBL
Match: I1MF15_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G092600 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDD+   
Sbjct: 18  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDSSS 77

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF+N+ R VFG
Sbjct: 78  SSAASDKSRGPFWNLLRLVFG 98

Query: 137  196
           
Sbjct: 138  98

Query: 197  256
           
Sbjct: 198  98

Query: 257  260
           
Sbjct: 258  98

[Close]

BLAST of CU128654 vs. TrEMBL
Match: A0A0S3S394_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G067500 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDD+   
Sbjct: 21  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDSSS 80

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF+N+ R VFG
Sbjct: 81  SSAASDKSRGPFWNLLRLVFG 101

Query: 137  196
           
Sbjct: 141  101

Query: 197  256
           
Sbjct: 201  101

Query: 257  260
           
Sbjct: 261  101

[Close]

BLAST of CU128654 vs. TrEMBL
Match: A0A0L9VFW1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g222300 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDD+   
Sbjct: 21  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDSSS 80

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF+N+ R VFG
Sbjct: 81  SSAASDKSRGPFWNLLRLVFG 101

Query: 137  196
           
Sbjct: 141  101

Query: 197  256
           
Sbjct: 201  101

Query: 257  260
           
Sbjct: 261  101

[Close]

BLAST of CU128654 vs. TrEMBL
Match: I1M1H8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G219800 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-29
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDD+   
Sbjct: 21  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDSSS 80

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF+N+ R VFG
Sbjct: 81  SAAASDKSRGPFWNLLRLVFG 101

Query: 137  196
           
Sbjct: 141  101

Query: 197  256
           
Sbjct: 201  101

Query: 257  260
           
Sbjct: 261  101

[Close]

BLAST of CU128654 vs. NCBI nr
Match: gi|449439183|ref|XP_004137366.1| (PREDICTED: F-box protein At5g46170-like [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 78/86 (90.70%), Postives = 78/86 (90.70%), Query Frame = 2


Query: 2   STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 61
           STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD
Sbjct: 29  STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 88

Query: 62  DEXXXXXXXXGKSRGPFFNIFRFVFG 121
           DE        GKSRGPFFNIFRFVFG
Sbjct: 89  DESSSSSSSSGKSRGPFFNIFRFVFG 114

Query: 122  181
           
Sbjct: 149  114

Query: 182  241
           
Sbjct: 209  114

Query: 242  260
           
Sbjct: 269  114

[Close]

BLAST of CU128654 vs. NCBI nr
Match: gi|659068455|ref|XP_008444512.1| (PREDICTED: F-box protein At5g46170-like [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 2


Query: 2   STSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 61
           +TSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD
Sbjct: 29  TTSCCIDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISD 88

Query: 62  DEXXXXXXXXGKSRGPFFNIFRFVFG 121
           DE        GKSRGPFFNIFRFVFG
Sbjct: 89  DESSSSSSSSGKSRGPFFNIFRFVFG 114

Query: 122  181
           
Sbjct: 149  114

Query: 182  241
           
Sbjct: 209  114

Query: 242  260
           
Sbjct: 269  114

[Close]

BLAST of CU128654 vs. NCBI nr
Match: gi|1012248389|ref|XP_015942888.1| (PREDICTED: F-box protein At5g46170 [Arachis duranensis])

HSP 1 Score: 137.9 bits (346), Expect = 8.4e-30
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDD+   
Sbjct: 21  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHSLVPQVENVVVRVDCVISDDDSSS 80

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF N+FR VFG
Sbjct: 81  SAAASDKSRGPFSNLFRLVFG 101

Query: 137  196
           
Sbjct: 141  101

Query: 197  256
           
Sbjct: 201  101

Query: 257  260
           
Sbjct: 261  101

[Close]

BLAST of CU128654 vs. NCBI nr
Match: gi|147818878|emb|CAN73778.1| (hypothetical protein VITISV_042179 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDDE   
Sbjct: 31  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHTLVPQVENVVVRVDCVISDDESSS 90

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF ++FR VFG
Sbjct: 91  AAGSLEKSRGPFSHLFRLVFG 111

Query: 137  196
           
Sbjct: 151  111

Query: 197  256
           
Sbjct: 211  111

Query: 257  260
           
Sbjct: 271  111

[Close]

BLAST of CU128654 vs. NCBI nr
Match: gi|225443916|ref|XP_002278480.1| (PREDICTED: F-box protein At5g46170 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 1.9e-29
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 2


Query: 17  IDHFDRLPDSLLLLIFNKIGDVKALGRCCVVSRRFHCLVPQVENVVVRVDCVISDDEXXX 76
           IDHFDRLPDSLLLL+FNKIGDVKALGRCCVVSRRFH LVPQVENVVVRVDCVISDDE   
Sbjct: 31  IDHFDRLPDSLLLLVFNKIGDVKALGRCCVVSRRFHTLVPQVENVVVRVDCVISDDESSS 90

Query: 77  XXXXXGKSRGPFFNIFRFVFG 136
                 KSRGPF ++FR VFG
Sbjct: 91  AAGSLEKSRGPFSHLFRLVFG 111

Query: 137  196
           
Sbjct: 151  111

Query: 197  256
           
Sbjct: 211  111

Query: 257  260
           
Sbjct: 271  111

The following BLAST results are available for this feature:

BLAST of CU128654 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB285_ARATH	5.6e-26	71.43	F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1	[more]
FB237_ARATH	2.6e-23	67.47	F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1	[more]
FB19_ARATH	1.2e-20	58.24	F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1	[more]
FB303_ARATH	1.1e-08	50.91	F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2 SV=1	[more]
FB91_ARATH	3.8e-06	40.35	F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1	[more]

BLAST of CU128654 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSD6_CUCSA	1.7e-37	90.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025900 PE=4 SV=1	[more]
I1MF15_SOYBN	2.9e-29	80.25	Uncharacterized protein OS=Glycine max GN=GLYMA_15G092600 PE=4 SV=1	[more]
A0A0S3S394_PHAAN	2.9e-29	80.25	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G067500 PE=...	[more]
A0A0L9VFW1_PHAAN	2.9e-29	80.25	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g222300 PE=4 SV=1	[more]
I1M1H8_SOYBN	2.9e-29	80.25	Uncharacterized protein OS=Glycine max GN=GLYMA_13G219800 PE=4 SV=1	[more]

BLAST of CU128654 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439183\|ref\|XP_004137366.1\|	1.1e-37	90.70	PREDICTED: F-box protein At5g46170-like [Cucumis sativus]	[more]
gi\|659068455\|ref\|XP_008444512.1\|	2.4e-37	89.53	PREDICTED: F-box protein At5g46170-like [Cucumis melo]	[more]
gi\|1012248389\|ref\|XP_015942888.1\|	8.4e-30	81.48	PREDICTED: F-box protein At5g46170 [Arachis duranensis]	[more]
gi\|147818878\|emb\|CAN73778.1\|	1.9e-29	81.48	hypothetical protein VITISV_042179 [Vitis vinifera]	[more]
gi\|225443916\|ref\|XP_002278480.1\|	1.9e-29	81.48	PREDICTED: F-box protein At5g46170 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025900	Csa1G025900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MMN4O	FKNP3UI02MMN4O	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 11..45 score: 1.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 4..45 score: 4.4
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 7..46 score: 1.
None	No IPR available	PANTHER	PTHR31215	FAMILY NOT NAMED	coord: 7..88 score: 6.8
None	No IPR available	PANTHER	PTHR31215:SF2	SUBFAMILY NOT NAMED	coord: 7..88 score: 6.8