CU128346 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU128346
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	HXXXD-type acyl-transferase family protein, putative
Location	Chr1 : 4916974 .. 4917231 (-)
Sequence length	266

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGACATCAATTCATCATCGTCGTCGTCCACTCTTTTTAGTTCTGTCGATTCAGTTTTCAATTCAAAGACAGAGCTTCAAAAATCCCAACAATGGAACTTCAAATTCTGACCAAAGAAATCATCAAACCTTCTTCTCCAACCCCTTCTCATCTTCATCGTTTCAATATCTCTCTCCTCGACCAGCTCTCCACCGCCGGTTACGTCCCCGTCATTCTCTTTTTCCCCAATTCCAACGGAGCGCCGTCTTTTCACGAAAGAT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU128346 vs. Swiss-Prot
Match: SALAT_PAPSO (Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 2


Query: 104 LQILTKEIIKPSSPTPSHLHRFNISLLDQ-LSTAGYVPVILFFP----NSNGAPSFHE 163
           +++++KE IKP++PTPS L  FN+SLLDQ      YVP+ILF+P    NS G+ + H+
Sbjct: 9   VEVISKETIKPTTPTPSQLKNFNLSLLDQCFPLYYYVPIILFYPATAANSTGSSNHHD 66

Query: 164  223
           
Sbjct: 69   66

Query: 224  263
           
Sbjct: 129  66

[Close]

BLAST of CU128346 vs. TrEMBL
Match: A0A0A0LW24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044900 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER 157
           MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER
Sbjct: 1   MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER 56

Query: 158  217
           
Sbjct: 61   56

Query: 218  266
           
Sbjct: 121  56

[Close]

BLAST of CU128346 vs. TrEMBL
Match: A0A124RHA1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026143 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2


Query: 80  ASKIPTMELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNG 139
           A +   ME++I++KE IKPSSPTP HL  F +SLLDQL    YVP++L++PN NG
Sbjct: 431 APEFEAMEIEIISKESIKPSSPTPHHLKTFKLSLLDQLIINPYVPIVLYYPNHNG 485

Query: 140  199
           
Sbjct: 491  485

Query: 200  245
           
Sbjct: 551  485

[Close]

BLAST of CU128346 vs. TrEMBL
Match: A0A124RHA1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026143 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNG 157
           ME++I++ E IKPSSPTP HL  F +SLLDQL +  YVP++L++ N NG
Sbjct: 1   MEIEIISTENIKPSSPTPPHLKTFKLSLLDQLVSNPYVPLVLYYCNDNG 49

Query: 158  217
           
Sbjct: 61   49

Query: 218  245
           
Sbjct: 121  49

HSP 2 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGA 157
           ME++I++KE IKPSSPTP HL  F +SLLDQL    YVP++L++PN NG+
Sbjct: 1   MEIEIISKESIKPSSPTPHHLKTFELSLLDQLVVDPYVPIVLYYPNHNGS 50

Query: 158  217
           
Sbjct: 61   50

Query: 218  248
           
Sbjct: 121  50

[Close]

BLAST of CU128346 vs. TrEMBL
Match: A0A103YEP0_CYNCS (Chloramphenicol acetyltransferase-like domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_013923 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNG 157
           M++++++KE IKPSSPTP HL  F + +LDQL    YVP+IL++PNSNG
Sbjct: 591 MDIEVISKESIKPSSPTPPHLKSFKLCVLDQLVVNPYVPIILYYPNSNG 639

Query: 158  217
           
Sbjct: 651  639

Query: 218  245
           
Sbjct: 711  639

[Close]

BLAST of CU128346 vs. TrEMBL
Match: A0A103YEP0_CYNCS (Chloramphenicol acetyltransferase-like domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_013923 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNG 157
           ME+ +++K+ +KPSSPTP HL  F +SLLDQL  + YVP+I ++PN +G
Sbjct: 1   MEVVVISKDSVKPSSPTPPHLKTFELSLLDQLVISPYVPIIFYYPNHHG 49

Query: 158  217
           
Sbjct: 61   49

Query: 218  245
           
Sbjct: 121  49

HSP 2 Score: 56.2 bits (134), Expect = 2.3e-05
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 2


Query: 98   MELQILTKEIIKPSSPTPSHLHRFNISLLDQLST-AGYVPVILFFPNSN 157
            ME+Q+++KE IKPSSPTP HL  F + L+DQ+     Y  ++LF+PN N
Sbjct: 1009 MEIQVISKENIKPSSPTPPHLQTFELCLIDQIVIHPSYATLVLFYPNHN 1057

Query: 158   217
            
Sbjct: 1069  1057

Query: 218   242
            
Sbjct: 1129  1057

HSP 3 Score: 65.9 bits (159), Expect = 2.9e-08
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSN 157
           M++Q++++E I+PSSPTP HL +FN+ LLDQL  A Y P++LF+PN N
Sbjct: 33  MKVQVISRENIQPSSPTPKHLKKFNLCLLDQLIPAPYAPIVLFYPNLN 80

Query: 158  217
           
Sbjct: 93   80

Query: 218  242
           
Sbjct: 153  80

[Close]

BLAST of CU128346 vs. NCBI nr
Match: gi|449469643|ref|XP_004152528.1| (PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER 157
           MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER
Sbjct: 1   MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER 56

Query: 158  217
           
Sbjct: 61   56

Query: 218  266
           
Sbjct: 121  56

[Close]

BLAST of CU128346 vs. NCBI nr
Match: gi|659067044|ref|XP_008437382.1| (PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 5.6e-21
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGAPSFHER 157
           ME+QILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGA  F+ER
Sbjct: 1   MEVQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGATPFNER 56

Query: 158  217
           
Sbjct: 61   56

Query: 218  266
           
Sbjct: 121  56

[Close]

BLAST of CU128346 vs. NCBI nr
Match: gi|976794200|gb|KVG85969.1| (hypothetical protein Ccrd_026143 [Cynara cardunculus var. scolymus])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2


Query: 80  ASKIPTMELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNG 139
           A +   ME++I++KE IKPSSPTP HL  F +SLLDQL    YVP++L++PN NG
Sbjct: 431 APEFEAMEIEIISKESIKPSSPTPHHLKTFKLSLLDQLIINPYVPIVLYYPNHNG 485

Query: 140  199
           
Sbjct: 491  485

Query: 200  245
           
Sbjct: 551  485

[Close]

BLAST of CU128346 vs. NCBI nr
Match: gi|976794199|gb|KVG85968.1| (Chloramphenicol acetyltransferase-like domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNGA 157
           ME++I++KE IKPSSPTP HL  F +SLLDQL    YVP++L++PN NG+
Sbjct: 1   MEIEIISKESIKPSSPTPHHLKTFELSLLDQLVVDPYVPIVLYYPNHNGS 50

Query: 158  217
           
Sbjct: 61   50

Query: 218  248
           
Sbjct: 121  50

[Close]

BLAST of CU128346 vs. NCBI nr
Match: gi|976923379|gb|KVI07714.1| (Chloramphenicol acetyltransferase-like domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 2


Query: 98  MELQILTKEIIKPSSPTPSHLHRFNISLLDQLSTAGYVPVILFFPNSNG 157
           M++++++KE IKPSSPTP HL  F + +LDQL    YVP+IL++PNSNG
Sbjct: 591 MDIEVISKESIKPSSPTPPHLKSFKLCVLDQLVVNPYVPIILYYPNSNG 639

Query: 158  217
           
Sbjct: 651  639

Query: 218  245
           
Sbjct: 711  639

The following BLAST results are available for this feature:

BLAST of CU128346 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SALAT_PAPSO	1.2e-07	48.28	Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1	[more]

BLAST of CU128346 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW24_CUCSA	1.9e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G044900 PE=4 SV=1	[more]
A0A124RHA1_CYNCS	1.5e-09	56.36	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026143 PE=4 ...	[more]
A0A124RHA1_CYNCS	2.4e-07	57.14	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_026143 PE=4 ...	[more]
A0A103YEP0_CYNCS	1.3e-08	57.14	Chloramphenicol acetyltransferase-like domain-containing protein OS=Cynara cardu...	[more]
A0A103YEP0_CYNCS	1.9e-07	53.06	Chloramphenicol acetyltransferase-like domain-containing protein OS=Cynara cardu...	[more]

BLAST of CU128346 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469643\|ref\|XP_004152528.1\|	1.2e-23	100.00	PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis sativus]	[more]
gi\|659067044\|ref\|XP_008437382.1\|	5.6e-21	92.86	PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis melo]	[more]
gi\|976794200\|gb\|KVG85969.1\|	1.3e-09	56.36	hypothetical protein Ccrd_026143 [Cynara cardunculus var. scolymus]	[more]
gi\|976794199\|gb\|KVG85968.1\|	1.7e-09	60.00	Chloramphenicol acetyltransferase-like domain-containing protein [Cynara cardunc...	[more]
gi\|976923379\|gb\|KVI07714.1\|	1.1e-08	57.14	Chloramphenicol acetyltransferase-like domain-containing protein [Cynara cardunc...	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G044900	Csa1G044900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MIN5A	FKNP3UI02MIN5A	EST