CU128246 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU128246
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 14792087 .. 14792334 (+)
Sequence length	247

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGAATGTTTTTAGAGCTTGGACTAGTGCTCTTTCTTGTACAGCTGACCAATCGTCTTGCTCTGAACTAGAGGATACTCCATTTGCAGATGGATTGCTAGGAGTTTGGTTGTTTACATTTTGTCCTACCGAGGACATGTCCAGATTGCCATTAATTGCCACATTGTCTTCGGGTTTTTTAGAGGATACACCTTCTAACTCTTCTCTAGTTGAAAGCGGAGATGCAATGGACTGTGCCGGTTTCCTTT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU128246 vs. TrEMBL
Match: A0A0A0LAD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223330 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-27
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXXX 62
           RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQT            
Sbjct: 526 RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTPSNPSANGVSSS 585

Query: 63  XEQDDWSAVQERALVQALKTF 122
            EQDDWSAVQERALVQALKTF
Sbjct: 586 SEQDDWSAVQERALVQALKTF 606

Query: 123  182
           
Sbjct: 646  606

Query: 183  242
           
Sbjct: 706  606

Query: 243  246
           
Sbjct: 766  606

[Close]

BLAST of CU128246 vs. TrEMBL
Match: A0A067LN92_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11837 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-11
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKKPEDNV-AINGNLDMSSVGQNVNNQTXXXXXXXXXXX 62
           RKPAQSIASPL+TREE+EGVS+K+  +N  A   N + +S G   N  +           
Sbjct: 524 RKPAQSIASPLTTREEIEGVSTKQGRENSDARMPNSEETSSGSANNKNSDEAVAENGVSS 583

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             EQD WSAVQERALVQALKTF
Sbjct: 584 SSEQDVWSAVQERALVQALKTF 605

Query: 123  182
           
Sbjct: 644  605

Query: 183  242
           
Sbjct: 704  605

Query: 243  246
           
Sbjct: 764  605

[Close]

BLAST of CU128246 vs. TrEMBL
Match: A5C384_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040643 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.9e-10
Identity = 44/82 (53.66%), Postives = 47/82 (57.32%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKK-PEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXX 62
           RKPAQSIASPL+TREE EGV  +  PE N +   NL  SS                    
Sbjct: 523 RKPAQSIASPLTTREETEGVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTS 582

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             EQD WSAVQERALVQALKTF
Sbjct: 583 SSEQDLWSAVQERALVQALKTF 604

Query: 123  182
           
Sbjct: 643  604

Query: 183  242
           
Sbjct: 703  604

Query: 243  246
           
Sbjct: 763  604

[Close]

BLAST of CU128246 vs. TrEMBL
Match: F6HF72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00790 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.9e-10
Identity = 44/82 (53.66%), Postives = 47/82 (57.32%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKK-PEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXX 62
           RKPAQSIASPL+TREE EGV  +  PE N +   NL  SS                    
Sbjct: 527 RKPAQSIASPLTTREETEGVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTS 586

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             EQD WSAVQERALVQALKTF
Sbjct: 587 SSEQDLWSAVQERALVQALKTF 608

Query: 123  182
           
Sbjct: 647  608

Query: 183  242
           
Sbjct: 707  608

Query: 243  246
           
Sbjct: 767  608

[Close]

BLAST of CU128246 vs. TrEMBL
Match: B9SS17_RICCO (Zuotin, putative OS=Ricinus communis GN=RCOM_0519910 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQT-XXXXXXXXXXX 62
           RKPAQSIASPL+TREE+E V+SK+  ++ A   +    S  ++ NN+             
Sbjct: 572 RKPAQSIASPLTTREEIERVASKQGPESSATKIDGSEESFSRSANNKNPDDVIAENGGPS 631

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             +QD WSAVQERALVQALKTF
Sbjct: 632 SSDQDAWSAVQERALVQALKTF 653

Query: 123  182
           
Sbjct: 692  653

Query: 183  242
           
Sbjct: 752  653

Query: 243  246
           
Sbjct: 812  653

[Close]

BLAST of CU128246 vs. NCBI nr
Match: gi|659112064|ref|XP_008456047.1| (PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXXX 62
           RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQT            
Sbjct: 526 RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTPVNSSANGVSSS 585

Query: 63  XEQDDWSAVQERALVQALKTF 122
            EQDDWSAVQERALVQALKTF
Sbjct: 586 SEQDDWSAVQERALVQALKTF 606

Query: 123  182
           
Sbjct: 646  606

Query: 183  242
           
Sbjct: 706  606

Query: 243  246
           
Sbjct: 766  606

[Close]

BLAST of CU128246 vs. NCBI nr
Match: gi|449457039|ref|XP_004146256.1| (PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXXX 62
           RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQT            
Sbjct: 526 RKPAQSIASPLSTREELEGVSSKKPEDNVAINGNLDMSSVGQNVNNQTPSNPSANGVSSS 585

Query: 63  XEQDDWSAVQERALVQALKTF 122
            EQDDWSAVQERALVQALKTF
Sbjct: 586 SEQDDWSAVQERALVQALKTF 606

Query: 123  182
           
Sbjct: 646  606

Query: 183  242
           
Sbjct: 706  606

Query: 243  246
           
Sbjct: 766  606

[Close]

BLAST of CU128246 vs. NCBI nr
Match: gi|802540159|ref|XP_012075001.1| (PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-10
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKKPEDNV-AINGNLDMSSVGQNVNNQTXXXXXXXXXXX 62
           RKPAQSIASPL+TREE+EGVS+K+  +N  A   N + +S G   N  +           
Sbjct: 524 RKPAQSIASPLTTREEIEGVSTKQGRENSDARMPNSEETSSGSANNKNSDEAVAENGVSS 583

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             EQD WSAVQERALVQALKTF
Sbjct: 584 SSEQDVWSAVQERALVQALKTF 605

Query: 123  182
           
Sbjct: 644  605

Query: 183  242
           
Sbjct: 704  605

Query: 243  246
           
Sbjct: 764  605

[Close]

BLAST of CU128246 vs. NCBI nr
Match: gi|731371865|ref|XP_010649490.1| (PREDICTED: dnaJ homolog subfamily C member 2 [Vitis vinifera])

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-09
Identity = 44/82 (53.66%), Postives = 47/82 (57.32%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKK-PEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXX 62
           RKPAQSIASPL+TREE EGV  +  PE N +   NL  SS                    
Sbjct: 527 RKPAQSIASPLTTREETEGVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTS 586

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             EQD WSAVQERALVQALKTF
Sbjct: 587 SSEQDLWSAVQERALVQALKTF 608

Query: 123  182
           
Sbjct: 647  608

Query: 183  242
           
Sbjct: 707  608

Query: 243  246
           
Sbjct: 767  608

[Close]

BLAST of CU128246 vs. NCBI nr
Match: gi|147802497|emb|CAN64160.1| (hypothetical protein VITISV_040643 [Vitis vinifera])

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-09
Identity = 44/82 (53.66%), Postives = 47/82 (57.32%), Query Frame = -3


Query: 3   RKPAQSIASPLSTREELEGVSSKK-PEDNVAINGNLDMSSVGQNVNNQTXXXXXXXXXXX 62
           RKPAQSIASPL+TREE EGV  +  PE N +   NL  SS                    
Sbjct: 523 RKPAQSIASPLTTREETEGVLIQNGPESNASNKDNLKESSSTSGKQQNPDGAVASNGVTS 582

Query: 63  XXEQDDWSAVQERALVQALKTF 122
             EQD WSAVQERALVQALKTF
Sbjct: 583 SSEQDLWSAVQERALVQALKTF 604

Query: 123  182
           
Sbjct: 643  604

Query: 183  242
           
Sbjct: 703  604

Query: 243  246
           
Sbjct: 763  604

The following BLAST results are available for this feature:

BLAST of CU128246 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAD6_CUCSA	1.2e-27	83.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G223330 PE=4 SV=1	[more]
A0A067LN92_JATCU	2.6e-11	54.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11837 PE=4 SV=1	[more]
A5C384_VITVI	4.9e-10	53.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040643 PE=4 SV=1	[more]
F6HF72_VITVI	4.9e-10	53.66	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00790 PE=4 SV=...	[more]
B9SS17_RICCO	1.8e-09	50.00	Zuotin, putative OS=Ricinus communis GN=RCOM_0519910 PE=4 SV=1	[more]

BLAST of CU128246 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112064\|ref\|XP_008456047.1\|	1.4e-26	83.95	PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis melo]	[more]
gi\|449457039\|ref\|XP_004146256.1\|	1.4e-26	83.95	PREDICTED: dnaJ homolog subfamily C member 2-like [Cucumis sativus]	[more]
gi\|802540159\|ref\|XP_012075001.1\|	3.1e-10	54.88	PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]	[more]
gi\|731371865\|ref\|XP_010649490.1\|	5.9e-09	53.66	PREDICTED: dnaJ homolog subfamily C member 2 [Vitis vinifera]	[more]
gi\|147802497\|emb\|CAN64160.1\|	5.9e-09	53.66	hypothetical protein VITISV_040643 [Vitis vinifera]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G223330	Csa3G223330	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MGW6Y	FKNP3UI02MGW6Y	EST