CU127802 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU127802
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 17108325 .. 17108550 (+)
Sequence length	236

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTGTGATGAATTGTGCAATAGCTTAAGGTGAGATCGGTTAGAGATGGACAATGGTTGGAGAGAATGAAAAGTCCACGATCATCCAATTGCTTCCCTAGTTTTGACATCCAACCTGAATACGTGATCTCAATTCGTACTAAATTGGGAAACCTAAGACACAGAGATGTCAAAGCTTCATCTGCAGGGTCTAATCCACAACCAACTCGAAGGAACTGTCTGTTTTCTTTATCTAAACG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU127802 vs. Swiss-Prot
Match: FBL14_ARATH (F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-24
Identity = 51/74 (68.92%), Postives = 59/74 (79.73%), Query Frame = -1


Query: 12  LDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILSN 71
           LD E R  LR+GCGL PA +AL SLC RFPNL ++EI YSGWMSKLGKQ+DD+GL +L+ 
Sbjct: 48  LDNEQRYSLRIGCGLVPASDALLSLCRRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTT 107

Query: 72  HCPSLTDLTLSYCT 131
           +C SLTDLTLS+CT
Sbjct: 108 NCHSLTDLTLSFCT 121

Query: 132  191
           
Sbjct: 168  121

Query: 192  234
           
Sbjct: 228  121

[Close]

BLAST of CU127802 vs. TrEMBL
Match: A0A0A0K8N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432150 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1


Query: 12  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 71
           RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS
Sbjct: 34  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 93

Query: 72  NHCPSLTDLTLSYCT 131
           NHCPSLTDLTLSYCT
Sbjct: 94  NHCPSLTDLTLSYCT 108

Query: 132  191
           
Sbjct: 154  108

Query: 192  237
           
Sbjct: 214  108

[Close]

BLAST of CU127802 vs. TrEMBL
Match: B9IJF9_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0017s08050g PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-28
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = -1


Query: 12  LDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILSN 71
           LD E RQ +RVGCGLDPA++ALTSLC RFPNL ++EITY+GWMSKLGKQLDD+GL IL+N
Sbjct: 35  LDNEQRQSMRVGCGLDPANQALTSLCNRFPNLAKVEITYAGWMSKLGKQLDDQGLVILAN 94

Query: 72  HCPSLTDLTLSYCT 131
           +CPSLTDLTLSYCT
Sbjct: 95  NCPSLTDLTLSYCT 108

Query: 132  191
           
Sbjct: 155  108

Query: 192  234
           
Sbjct: 215  108

[Close]

BLAST of CU127802 vs. TrEMBL
Match: W9QX54_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009485 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-27
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = -1


Query: 12  LDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILSN 71
           LD E RQ LRVGCGLDPA+EALT LC RFPNL ++EI YSGWMSKLGKQLDD+GL +LS 
Sbjct: 35  LDNEQRQSLRVGCGLDPANEALTLLCTRFPNLTKVEIIYSGWMSKLGKQLDDQGLSVLST 94

Query: 72  HCPSLTDLTLSYCT 131
           +CPSLTDLTLSYCT
Sbjct: 95  YCPSLTDLTLSYCT 108

Query: 132  191
           
Sbjct: 155  108

Query: 192  234
           
Sbjct: 215  108

[Close]

BLAST of CU127802 vs. TrEMBL
Match: A0A059AJE5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03091 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-27
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = -1


Query: 12  LDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILSN 71
           LD E R  LRVGCGLDP +EALT+LC+RFPNL ++EI+YSGWMSKLGKQLDD+GL ILSN
Sbjct: 35  LDNEQRHSLRVGCGLDPVNEALTALCIRFPNLAKVEISYSGWMSKLGKQLDDQGLLILSN 94

Query: 72  HCPSLTDLTLSYCT 131
           +CPSL++LTLSYCT
Sbjct: 95  YCPSLSNLTLSYCT 108

Query: 132  191
           
Sbjct: 155  108

Query: 192  234
           
Sbjct: 215  108

[Close]

BLAST of CU127802 vs. TrEMBL
Match: B9SWS9_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0010960 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.2e-27
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = -1


Query: 12  LDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILSN 71
           LD E RQ LRVGCGL PA++ALTSLC RFPNLV++EITYSGWMSKLGKQLDD+GL +L+N
Sbjct: 35  LDNEQRQSLRVGCGLHPANQALTSLCNRFPNLVKVEITYSGWMSKLGKQLDDQGLLLLAN 94

Query: 72  HCPSLTDLTLSYCT 131
           +CPSL+DL LSYCT
Sbjct: 95  NCPSLSDLALSYCT 108

Query: 132  191
           
Sbjct: 155  108

Query: 192  234
           
Sbjct: 215  108

[Close]

BLAST of CU127802 vs. NCBI nr
Match: gi|778728972|ref|XP_011659509.1| (PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 3.8e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1


Query: 12  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 71
           RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS
Sbjct: 41  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 100

Query: 72  NHCPSLTDLTLSYCT 131
           NHCPSLTDLTLSYCT
Sbjct: 101 NHCPSLTDLTLSYCT 115

Query: 132  191
           
Sbjct: 161  115

Query: 192  237
           
Sbjct: 221  115

[Close]

BLAST of CU127802 vs. NCBI nr
Match: gi|778728975|ref|XP_011659510.1| (PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 3.8e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1


Query: 12  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 71
           RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS
Sbjct: 34  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 93

Query: 72  NHCPSLTDLTLSYCT 131
           NHCPSLTDLTLSYCT
Sbjct: 94  NHCPSLTDLTLSYCT 108

Query: 132  191
           
Sbjct: 154  108

Query: 192  237
           
Sbjct: 214  108

[Close]

BLAST of CU127802 vs. NCBI nr
Match: gi|659122469|ref|XP_008461161.1| (PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 12  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 71
           RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDD GLFILS
Sbjct: 40  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDHGLFILS 99

Query: 72  NHCPSLTDLTLSYCT 131
           NHCPSLTDLTLSYCT
Sbjct: 100 NHCPSLTDLTLSYCT 114

Query: 132  191
           
Sbjct: 160  114

Query: 192  237
           
Sbjct: 220  114

[Close]

BLAST of CU127802 vs. NCBI nr
Match: gi|659122467|ref|XP_008461160.1| (PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 12  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 71
           RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDD GLFILS
Sbjct: 47  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDHGLFILS 106

Query: 72  NHCPSLTDLTLSYCT 131
           NHCPSLTDLTLSYCT
Sbjct: 107 NHCPSLTDLTLSYCT 121

Query: 132  191
           
Sbjct: 167  121

Query: 192  237
           
Sbjct: 227  121

[Close]

BLAST of CU127802 vs. NCBI nr
Match: gi|659122471|ref|XP_008461162.1| (PREDICTED: F-box/LRR-repeat protein 14 isoform X3 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1


Query: 12  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDRGLFILS 71
           RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDD GLFILS
Sbjct: 34  RLDKENRQFLRVGCGLDPADEALTSLCLRFPNLVRIEITYSGWMSKLGKQLDDHGLFILS 93

Query: 72  NHCPSLTDLTLSYCT 131
           NHCPSLTDLTLSYCT
Sbjct: 94  NHCPSLTDLTLSYCT 108

Query: 132  191
           
Sbjct: 154  108

Query: 192  237
           
Sbjct: 214  108

The following BLAST results are available for this feature:

BLAST of CU127802 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FBL14_ARATH	2.1e-24	68.92	F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2 SV=1	[more]

BLAST of CU127802 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8N4_CUCSA	2.9e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432150 PE=4 SV=1	[more]
B9IJF9_POPTR	8.5e-28	79.73	F-box family protein OS=Populus trichocarpa GN=POPTR_0017s08050g PE=4 SV=1	[more]
W9QX54_9ROSA	4.2e-27	79.73	Uncharacterized protein OS=Morus notabilis GN=L484_009485 PE=4 SV=1	[more]
A0A059AJE5_EUCGR	5.5e-27	77.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03091 PE=4 SV=1	[more]
B9SWS9_RICCO	7.2e-27	78.38	Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0010960 PE=4 SV=1	[more]

BLAST of CU127802 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728972\|ref\|XP_011659509.1\|	3.8e-37	100.00	PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Cucumis sativus]	[more]
gi\|778728975\|ref\|XP_011659510.1\|	3.8e-37	100.00	PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Cucumis sativus]	[more]
gi\|659122469\|ref\|XP_008461161.1\|	1.4e-36	98.67	PREDICTED: F-box/LRR-repeat protein 14 isoform X2 [Cucumis melo]	[more]
gi\|659122467\|ref\|XP_008461160.1\|	1.4e-36	98.67	PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Cucumis melo]	[more]
gi\|659122471\|ref\|XP_008461162.1\|	1.4e-36	98.67	PREDICTED: F-box/LRR-repeat protein 14 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G432150	Csa7G432150	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MAHCC	FKNP3UI02MAHCC	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF52047	RNI-like	coord: 19..74 score: 7.0