CU126497 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU126497
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionElongation factor 4
LocationChr4 : 1654807 .. 1654950 (+)
Sequence length146
The following sequences are available for this feature:

transcribed_cluster sequence

ATTGAGTCACAGGCATTGAAATATTCCAGAGCACTTGCAGTGTATGAACAAGAAAAAGTTCCTGCCCATGATCCAACAATGGAAGATTTTTTTTCAAAAACTTTTCCATTTTCTAGCCAATATTACAGAAAAAAGGCAATGAAGCC
Library categoryESTs
fruit (8DPP) library1
BLAST of CU126497 vs. TrEMBL
Match: A0A0A0KXA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011100 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.6e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK
Sbjct: 113 IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 160

Query: 61  120
           
Sbjct: 173 160

Query: 121 145
           
Sbjct: 233 160

BLAST of CU126497 vs. TrEMBL
Match: A0A067F9A8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012161mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-06
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVP-AHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           I+SQALKY+R LA Y+Q K+   +  T+E+F SK+  FSSQ+YRKKAMK
Sbjct: 110 IQSQALKYARELAAYDQNKLSRVNQSTVEEFGSKSLAFSSQWYRKKAMK 158

Query: 61  120
           
Sbjct: 170 158

Query: 121 145
           
Sbjct: 230 158

BLAST of CU126497 vs. TrEMBL
Match: V4TWA5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019728mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-06
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVP-AHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           I+SQALKY+R LA Y+Q K+   +  T+E+F SK+  FSSQ+YRKKAMK
Sbjct: 161 IQSQALKYARELAAYDQNKLSRVNQSTVEEFGSKSLAFSSQWYRKKAMK 209

Query: 61  120
           
Sbjct: 221 209

Query: 121 145
           
Sbjct: 281 209

BLAST of CU126497 vs. NCBI nr
Match: gi|449469202|ref|XP_004152310.1| (PREDICTED: uncharacterized protein LOC101221808 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK
Sbjct: 113 IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 160

Query: 61  120
           
Sbjct: 173 160

Query: 121 145
           
Sbjct: 233 160

BLAST of CU126497 vs. NCBI nr
Match: gi|659108194|ref|XP_008454067.1| (PREDICTED: uncharacterized protein LOC103494594 isoform X1 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-17
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           IESQALKYSRALAVYEQEKVPAHDPTME+FFSKTFPFSSQYYR+KAMK
Sbjct: 113 IESQALKYSRALAVYEQEKVPAHDPTMEEFFSKTFPFSSQYYRRKAMK 160

Query: 61  120
           
Sbjct: 173 160

Query: 121 145
           
Sbjct: 233 160

BLAST of CU126497 vs. NCBI nr
Match: gi|659108196|ref|XP_008454068.1| (PREDICTED: uncharacterized protein LOC103494594 isoform X2 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-17
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           IESQALKYSRALAVYEQEKVPAHDPTME+FFSKTFPFSSQYYR+KAMK
Sbjct: 113 IESQALKYSRALAVYEQEKVPAHDPTMEEFFSKTFPFSSQYYRRKAMK 160

Query: 61  120
           
Sbjct: 173 160

Query: 121 145
           
Sbjct: 233 160

BLAST of CU126497 vs. NCBI nr
Match: gi|659108198|ref|XP_008454069.1| (PREDICTED: uncharacterized protein LOC103494594 isoform X3 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-17
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 1

Query: 1   IESQALKYSRALAVYEQEKVPAHDPTMEDFFSKTFPFSSQYYRKKAMK 60
           IESQALKYSRALAVYEQEKVPAHDPTME+FFSKTFPFSSQYYR+KAMK
Sbjct: 14  IESQALKYSRALAVYEQEKVPAHDPTMEEFFSKTFPFSSQYYRRKAMK 61

Query: 61  120
           
Sbjct: 74  61

Query: 121 145
           
Sbjct: 134 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KXA6_CUCSA7.6e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011100 PE=4 SV=1[more]
A0A067F9A8_CITSI5.6e-0659.18Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012161mg PE=4 SV=1[more]
V4TWA5_9ROSI5.6e-0659.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019728mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449469202|ref|XP_004152310.1|3.2e-18100.00PREDICTED: uncharacterized protein LOC101221808 [Cucumis sativus][more]
gi|659108194|ref|XP_008454067.1|2.0e-1795.83PREDICTED: uncharacterized protein LOC103494594 isoform X1 [Cucumis melo][more]
gi|659108196|ref|XP_008454068.1|2.0e-1795.83PREDICTED: uncharacterized protein LOC103494594 isoform X2 [Cucumis melo][more]
gi|659108198|ref|XP_008454069.1|2.0e-1795.83PREDICTED: uncharacterized protein LOC103494594 isoform X3 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G011100Csa4G011100gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LS22LFKNP3UI02LS22LEST