CU126335 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU126335
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Exostosin-like protein
Location	Chr7 : 7253835 .. 7254071 (+)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGGGAGGATTGGTCAGGGAGAAACTCTGGGACTTGCTGGTTAATGAGCCTGATGTTATAATGGAAGAAGGGTTCCCAAATGCCACAGGTAAGGAGCAATCTATCAAAGGAATGAGATCATCAGAGTTTTGCTTACACCCAGCTGGGGATACCCCTACATCGTGCCGCCTTTTCGACGCCATCCAAAGTCTCTGTATACCTGTGGTTGTGAGCGACAACATCGAGCTTCCATTTGAAGCATGG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU126335 vs. Swiss-Prot
Match: ARAD1_ARATH (Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-19
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 4   GGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDAI 63
           GG VR+ L+ +L  E DV ++ G  +   +  + KGM +S+FCL+PAGDTP++CRLFD+I
Sbjct: 264 GGKVRDLLFQVLEKEDDVTIKHGTQSRENRRAATKGMHTSKFCLNPAGDTPSACRLFDSI 323

Query: 64  QSLCIPVVVSDNIELPFE 123
            SLC+P++VSD+IELPFE
Sbjct: 324 VSLCVPLIVSDSIELPFE 341

Query: 124  183
           
Sbjct: 384  341

Query: 184  238
           
Sbjct: 444  341

[Close]

BLAST of CU126335 vs. Swiss-Prot
Match: ARAD2_ARATH (Probable arabinosyltransferase ARAD2 OS=Arabidopsis thaliana GN=ARAD2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.1e-18
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 4   GGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDAI 63
           GG VR+ L+ LL  E DV+++ G  +        +GM +S+FCLH AGDT ++CRLFDAI
Sbjct: 260 GGKVRDLLFKLLEKEEDVVIKRGTQSRENMRAVKQGMHTSKFCLHLAGDTSSACRLFDAI 319

Query: 64  QSLCIPVVVSDNIELPFE 123
            SLC+PV+VSD IELPFE
Sbjct: 320 ASLCVPVIVSDGIELPFE 337

Query: 124  183
           
Sbjct: 380  337

Query: 184  238
           
Sbjct: 440  337

[Close]

BLAST of CU126335 vs. TrEMBL
Match: A0A0A0K3Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G201900 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA
Sbjct: 310 RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 369

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPVVVSDNIELPFE
Sbjct: 370 IQSLCIPVVVSDNIELPFE 388

Query: 121  180
           
Sbjct: 430  388

Query: 181  238
           
Sbjct: 490  388

[Close]

BLAST of CU126335 vs. TrEMBL
Match: M5VMT1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004914mg PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.7e-37
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEPDVIMEEGFPNATG+EQSIKGMR+S+FCLHPAGDTPTSCRLFDA
Sbjct: 303 RGGLVREKLWDLLVNEPDVIMEEGFPNATGREQSIKGMRTSKFCLHPAGDTPTSCRLFDA 362

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDNIELPFE
Sbjct: 363 IQSLCIPVIVSDNIELPFE 381

Query: 121  180
           
Sbjct: 423  381

Query: 181  238
           
Sbjct: 483  381

[Close]

BLAST of CU126335 vs. TrEMBL
Match: A0A0D2RH29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G075900 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-37
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEP VIMEEGFPNATG+EQSIKGMRSSEFCLHPAGDTPTSCRLFDA
Sbjct: 295 RGGLVREKLWDLLVNEPGVIMEEGFPNATGREQSIKGMRSSEFCLHPAGDTPTSCRLFDA 354

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDN+ELPFE
Sbjct: 355 IQSLCIPVIVSDNVELPFE 373

Query: 121  180
           
Sbjct: 415  373

Query: 181  238
           
Sbjct: 475  373

[Close]

BLAST of CU126335 vs. TrEMBL
Match: A0A0B0NS70_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_16979 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-37
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEP VIMEEGFPNATG+EQSIKGMRSSEFCLHPAGDTPTSCRLFDA
Sbjct: 295 RGGLVREKLWDLLVNEPGVIMEEGFPNATGREQSIKGMRSSEFCLHPAGDTPTSCRLFDA 354

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDN+ELPFE
Sbjct: 355 IQSLCIPVIVSDNVELPFE 373

Query: 121  180
           
Sbjct: 415  373

Query: 181  238
           
Sbjct: 475  373

[Close]

BLAST of CU126335 vs. TrEMBL
Match: A0A103XJV0_CYNCS (Exostosin-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_005951 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-37
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGL+REKLWDLL+NEP VIMEEGFPNATGKEQSIKGMR+SEFCLHPAGDTPTSCRLFDA
Sbjct: 305 RGGLIREKLWDLLINEPGVIMEEGFPNATGKEQSIKGMRTSEFCLHPAGDTPTSCRLFDA 364

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDNIELPFE
Sbjct: 365 IQSLCIPVIVSDNIELPFE 383

Query: 121  180
           
Sbjct: 425  383

Query: 181  238
           
Sbjct: 485  383

[Close]

BLAST of CU126335 vs. NCBI nr
Match: gi|778725585|ref|XP_004139861.2| (PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA
Sbjct: 310 RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 369

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPVVVSDNIELPFE
Sbjct: 370 IQSLCIPVVVSDNIELPFE 388

Query: 121  180
           
Sbjct: 430  388

Query: 181  238
           
Sbjct: 490  388

[Close]

BLAST of CU126335 vs. NCBI nr
Match: gi|659093871|ref|XP_008447763.1| (PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLL+NEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA
Sbjct: 301 RGGLVREKLWDLLINEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 360

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPVVVSDNIELPFE
Sbjct: 361 IQSLCIPVVVSDNIELPFE 379

Query: 121  180
           
Sbjct: 421  379

Query: 181  238
           
Sbjct: 481  379

[Close]

BLAST of CU126335 vs. NCBI nr
Match: gi|694423906|ref|XP_009339741.1| (PREDICTED: probable arabinosyltransferase ARAD1 [Pyrus x bretschneideri])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-38
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEPDVIMEEGFPNATG+EQS+KGMR+SEFCLHPAGDTPTSCRLFDA
Sbjct: 304 RGGLVREKLWDLLVNEPDVIMEEGFPNATGREQSLKGMRTSEFCLHPAGDTPTSCRLFDA 363

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDNIELPFE
Sbjct: 364 IQSLCIPVIVSDNIELPFE 382

Query: 121  180
           
Sbjct: 424  382

Query: 181  238
           
Sbjct: 484  382

[Close]

BLAST of CU126335 vs. NCBI nr
Match: gi|694422485|ref|XP_009339071.1| (PREDICTED: probable arabinosyltransferase ARAD1 [Pyrus x bretschneideri])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-38
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEPDVIMEEGFPNATG+EQS+KGMR+SEFCLHPAGDTPTSCRLFDA
Sbjct: 303 RGGLVREKLWDLLVNEPDVIMEEGFPNATGREQSLKGMRTSEFCLHPAGDTPTSCRLFDA 362

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDNIELPFE
Sbjct: 363 IQSLCIPVIVSDNIELPFE 381

Query: 121  180
           
Sbjct: 423  381

Query: 181  238
           
Sbjct: 483  381

[Close]

BLAST of CU126335 vs. NCBI nr
Match: gi|595795265|ref|XP_007200987.1| (hypothetical protein PRUPE_ppa004914mg [Prunus persica])

HSP 1 Score: 164.9 bits (416), Expect = 6.0e-38
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1   RGGLVREKLWDLLVNEPDVIMEEGFPNATGKEQSIKGMRSSEFCLHPAGDTPTSCRLFDA 60
           RGGLVREKLWDLLVNEPDVIMEEGFPNATG+EQSIKGMR+S+FCLHPAGDTPTSCRLFDA
Sbjct: 303 RGGLVREKLWDLLVNEPDVIMEEGFPNATGREQSIKGMRTSKFCLHPAGDTPTSCRLFDA 362

Query: 61  IQSLCIPVVVSDNIELPFE 120
           IQSLCIPV+VSDNIELPFE
Sbjct: 363 IQSLCIPVIVSDNIELPFE 381

Query: 121  180
           
Sbjct: 423  381

Query: 181  238
           
Sbjct: 483  381

The following BLAST results are available for this feature:

BLAST of CU126335 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARAD1_ARATH	4.8e-19	53.85	Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1	[more]
ARAD2_ARATH	9.1e-18	55.13	Probable arabinosyltransferase ARAD2 OS=Arabidopsis thaliana GN=ARAD2 PE=1 SV=1	[more]

BLAST of CU126335 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3Q7_CUCSA	2.5e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G201900 PE=4 SV=1	[more]
M5VMT1_PRUPE	4.7e-37	94.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004914mg PE=4 SV=1	[more]
A0A0D2RH29_GOSRA	6.1e-37	94.94	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G075900 PE=4 SV=1	[more]
A0A0B0NS70_GOSAR	6.1e-37	94.94	Uncharacterized protein OS=Gossypium arboreum GN=F383_16979 PE=4 SV=1	[more]
A0A103XJV0_CYNCS	7.9e-37	93.67	Exostosin-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_005951 PE=4 S...	[more]

BLAST of CU126335 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725585\|ref\|XP_004139861.2\|	3.2e-39	100.00	PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis sativus]	[more]
gi\|659093871\|ref\|XP_008447763.1\|	4.2e-39	98.73	PREDICTED: probable arabinosyltransferase ARAD2 [Cucumis melo]	[more]
gi\|694423906\|ref\|XP_009339741.1\|	3.5e-38	94.94	PREDICTED: probable arabinosyltransferase ARAD1 [Pyrus x bretschneideri]	[more]
gi\|694422485\|ref\|XP_009339071.1\|	3.5e-38	94.94	PREDICTED: probable arabinosyltransferase ARAD1 [Pyrus x bretschneideri]	[more]
gi\|595795265\|ref\|XP_007200987.1\|	6.0e-38	94.94	hypothetical protein PRUPE_ppa004914mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004263	Exostosin

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G201900	Csa7G201900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LPP94	FKNP3UI02LPP94	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004263	Exostosin-like	PFAM	PF03016	Exostosin	coord: 3..79 score: 6.8
None	No IPR available	PANTHER	PTHR11062	EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED	coord: 1..79 score: 2.0
None	No IPR available	PANTHER	PTHR11062:SF60	EXOSTOSIN FAMILY PROTEIN	coord: 1..79 score: 2.0