CU126158 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU126158
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 3000045 .. 3000274 (+)
Sequence length230
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GTAATAAGAAATTATGAAATTAGACTAAACGGGCATATGAGAGAGAAAATGGAAAAGGCTAAAAGGGTAAATGGTGGCGGTGAACCGGAGAGTGAGGGGACGAGGTGGACATGACGGCGAAACGAGAGCTGTAAATGGTGGAAACATCGACGCTGGTGGTGGTGGGTGCCCATGGGCTCTGACTTGGCGAGGTCATGCTTATGGAATTGGTTACGCCACCGCCGTACCCT
Library
Library categoryESTs
fruit (8DPP) library1
Homology
[Close]
BLAST of CU126158 vs. TrEMBL
Match: A0A0A0LPU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G026000 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.7e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = -2 

Query: 68  GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 127
           GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL
Sbjct: 237 GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 290

Query: 128  187
           
Sbjct: 297  290

Query: 188  230
           
Sbjct: 357  290

[Close]
BLAST of CU126158 vs. NCBI nr
Match: gi|778656616|ref|XP_011649394.1| (PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = -2 

Query: 68  GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 127
           GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL
Sbjct: 115 GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 168

Query: 128  187
           
Sbjct: 175  168

Query: 188  230
           
Sbjct: 235  168

[Close]
BLAST of CU126158 vs. NCBI nr
Match: gi|700208824|gb|KGN63920.1| (hypothetical protein Csa_1G026000 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 8.2e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = -2 

Query: 68  GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 127
           GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL
Sbjct: 237 GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 290

Query: 128  187
           
Sbjct: 297  290

Query: 188  230
           
Sbjct: 357  290

[Close]
BLAST of CU126158 vs. NCBI nr
Match: gi|659114912|ref|XP_008457288.1| (PREDICTED: uncharacterized protein LOC103497015 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = -2 

Query: 68  GYGGGVTNSISMTSPSQSPWAPTTTSVDVSTIYSSRFAVMSTSSPHSPVHRHHL 127
           GYGGGVTNSISMTSPSQSPWAPTT+SVDVSTIYSSRFAVMS+SSPHSP HRHHL
Sbjct: 266 GYGGGVTNSISMTSPSQSPWAPTTSSVDVSTIYSSRFAVMSSSSPHSPAHRHHL 319

Query: 128  187
           
Sbjct: 326  319

Query: 188  230
           
Sbjct: 386  319

The following BLAST results are available for this feature:
BLAST of CU126158 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPU0_CUCSA4.7e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G026000 PE=4 SV=1[more]
BLAST of CU126158 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656616|ref|XP_011649394.1|8.2e-21100.00PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Cucumis sativu... [more]
gi|700208824|gb|KGN63920.1|8.2e-21100.00hypothetical protein Csa_1G026000 [Cucumis sativus][more]
gi|659114912|ref|XP_008457288.1|2.0e-1994.44PREDICTED: uncharacterized protein LOC103497015 [Cucumis melo][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G026000Csa1G026000gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LNAT0FKNP3UI02LNAT0EST