CU125893 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU125893
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Far-red impaired responsive (FAR1) family protein
Location	Chr7 : 13359361 .. 13361524 (-)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCTAGTGCTCGTCGAAATGTTCTTCTTTCCCACACACGGGATGAGAAAGATGCAAAAATTCGAGAACTAACTGCCGAACTACAGCAAGAACGAAAGCGATGTGCAGCATATCAAGAACAGCTTGCCATGATTTTAGGAGACATGGAGGAACACTCAAATCATCTGGCAAGAAACATAGATAACATTATTCAAAGTGTGAGAGATATTGAATCAGAAAACAATG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU125893 vs. TrEMBL
Match: A0A0A0KA59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372900 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID
Sbjct: 144 ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 203

Query: 63  NIIQSVRDIESENN 122
           NIIQSVRDIESENN
Sbjct: 204 NIIQSVRDIESENN 217

Query: 123  182
           
Sbjct: 264  217

Query: 183  225
           
Sbjct: 324  217

[Close]

BLAST of CU125893 vs. TrEMBL
Match: F6I1W9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0174g00120 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-23
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           A++RR VLLS T DEKD KIRELTAELQ+ERKRCAA+QEQL M+L DMEEHSNHL+RNID
Sbjct: 170 ANSRRTVLLSQTPDEKDIKIRELTAELQRERKRCAAFQEQLDMVLRDMEEHSNHLSRNID 229

Query: 63  NIIQSVRDIESE 122
            I+QSVR+IES+
Sbjct: 230 GIVQSVREIESK 241

Query: 123  182
           
Sbjct: 290  241

Query: 183  219
           
Sbjct: 350  241

[Close]

BLAST of CU125893 vs. TrEMBL
Match: F6HWR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0269g00010 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-23
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           A++RR VLLS T DEKD KIRELTAELQ+ERKRCAA+QEQL M+L DMEEHSNHL+RNID
Sbjct: 80  ANSRRTVLLSQTPDEKDIKIRELTAELQRERKRCAAFQEQLDMVLRDMEEHSNHLSRNID 139

Query: 63  NIIQSVRDIESE 122
            I+QSVR+IES+
Sbjct: 140 GIVQSVREIESK 151

Query: 123  182
           
Sbjct: 200  151

Query: 183  219
           
Sbjct: 260  151

[Close]

BLAST of CU125893 vs. TrEMBL
Match: A5BGK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030390 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-23
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           A++RR VLLS T DEKD KIRELTAELQ+ERKRCAA+QEQL M+L DMEEHSNHL+RNID
Sbjct: 127 ANSRRTVLLSQTPDEKDIKIRELTAELQRERKRCAAFQEQLDMVLRDMEEHSNHLSRNID 186

Query: 63  NIIQSVRDIESE 122
            I+QSVR+IES+
Sbjct: 187 GIVQSVREIESK 198

Query: 123  182
           
Sbjct: 247  198

Query: 183  219
           
Sbjct: 307  198

[Close]

BLAST of CU125893 vs. TrEMBL
Match: M5VKI9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011264mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-21
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           A+ RR VLLS T DEKD KIRELTAELQ+ERKR AAYQEQL M+L +MEEHSNHL+RNID
Sbjct: 139 ANGRRTVLLSQTPDEKDVKIRELTAELQRERKRSAAYQEQLDMVLREMEEHSNHLSRNID 198

Query: 63  NIIQSVRDIESE 122
            I+QSV++IES+
Sbjct: 199 GIVQSVKEIESK 210

Query: 123  182
           
Sbjct: 259  210

Query: 183  219
           
Sbjct: 319  210

[Close]

BLAST of CU125893 vs. NCBI nr
Match: gi|449465248|ref|XP_004150340.1| (PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID
Sbjct: 144 ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 203

Query: 63  NIIQSVRDIESENN 122
           NIIQSVRDIESENN
Sbjct: 204 NIIQSVRDIESENN 217

Query: 123  182
           
Sbjct: 264  217

Query: 183  225
           
Sbjct: 324  217

[Close]

BLAST of CU125893 vs. NCBI nr
Match: gi|659092825|ref|XP_008447237.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-29
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMIL DMEEHSNHLARNID
Sbjct: 103 ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILRDMEEHSNHLARNID 162

Query: 63  NIIQSVRDIESENN 122
           NIIQSVRDIES+NN
Sbjct: 163 NIIQSVRDIESKNN 176

Query: 123  182
           
Sbjct: 223  176

Query: 183  225
           
Sbjct: 283  176

[Close]

BLAST of CU125893 vs. NCBI nr
Match: gi|659092823|ref|XP_008447236.1| (PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-29
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMIL DMEEHSNHLARNID
Sbjct: 144 ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILRDMEEHSNHLARNID 203

Query: 63  NIIQSVRDIESENN 122
           NIIQSVRDIES+NN
Sbjct: 204 NIIQSVRDIESKNN 217

Query: 123  182
           
Sbjct: 264  217

Query: 183  225
           
Sbjct: 324  217

[Close]

BLAST of CU125893 vs. NCBI nr
Match: gi|297742884|emb|CBI35674.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           A++RR VLLS T DEKD KIRELTAELQ+ERKRCAA+QEQL M+L DMEEHSNHL+RNID
Sbjct: 542 ANSRRTVLLSQTPDEKDIKIRELTAELQRERKRCAAFQEQLDMVLRDMEEHSNHLSRNID 601

Query: 63  NIIQSVRDIESE 122
            I+QSVR+IES+
Sbjct: 602 GIVQSVREIESK 613

Query: 123  182
           
Sbjct: 662  613

Query: 183  219
           
Sbjct: 722  613

[Close]

BLAST of CU125893 vs. NCBI nr
Match: gi|147864083|emb|CAN81120.1| (hypothetical protein VITISV_030390 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 56/72 (77.78%), Postives = 65/72 (90.28%), Query Frame = 3


Query: 3   ASARRNVLLSHTRDEKDAKIRELTAELQQERKRCAAYQEQLAMILGDMEEHSNHLARNID 62
           A++RR VLLS T DEKD KIRELTAELQ+ERKRCAA+QEQL M+L DMEEHSNHL+RNID
Sbjct: 127 ANSRRTVLLSQTPDEKDIKIRELTAELQRERKRCAAFQEQLDMVLRDMEEHSNHLSRNID 186

Query: 63  NIIQSVRDIESE 122
            I+QSVR+IES+
Sbjct: 187 GIVQSVREIESK 198

Query: 123  182
           
Sbjct: 247  198

Query: 183  219
           
Sbjct: 307  198

The following BLAST results are available for this feature:

BLAST of CU125893 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA59_CUCSA	1.1e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372900 PE=4 SV=1	[more]
F6I1W9_VITVI	7.8e-23	77.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0174g00120 PE=4 SV=...	[more]
F6HWR0_VITVI	7.8e-23	77.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0269g00010 PE=4 SV=...	[more]
A5BGK2_VITVI	7.8e-23	77.78	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030390 PE=4 SV=1	[more]
M5VKI9_PRUPE	2.5e-21	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011264mg PE=4 SV=1	[more]

BLAST of CU125893 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465248\|ref\|XP_004150340.1\|	1.1e-30	100.00	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 [Cucumis sativus]	[more]
gi\|659092825\|ref\|XP_008447237.1\|	2.7e-29	97.30	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 [Cucumis melo]	[more]
gi\|659092823\|ref\|XP_008447236.1\|	2.7e-29	97.30	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 [Cucumis melo]	[more]
gi\|297742884\|emb\|CBI35674.3\|	4.7e-21	77.78	unnamed protein product [Vitis vinifera]	[more]
gi\|147864083\|emb\|CAN81120.1\|	4.7e-21	77.78	hypothetical protein VITISV_030390 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G372900	Csa7G372900	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LJCQW	FKNP3UI02LJCQW	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 14..41 scor
None	No IPR available	PANTHER	PTHR31669:SF46	FAR-RED IMPAIRED RESPONSIVE 1-LIKE PROTEIN	coord: 4..75 score: 1.1