CU125445 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU125445
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationChr6 : 20241786 .. 20241935 (-)
Sequence length149
The following sequences are available for this feature:

transcribed_cluster sequence

AGCATTGTGGATACTATATTCTTCTTTCAAATATATATGCAGAAACAGGAAGGTGGGATGAGGCAAACAAAATTAGGGAACTGATGAAGTCTAGGGGAGCCAAAAAGAACCCTGGCTGTAGTTGGGTCCAAATTTATGACCAAGTGCAT
Library categoryESTs
fruit (8DPP) library1
BLAST of CU125445 vs. Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-10
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 3

Query: 9   GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 68
           GYY+LLSNIYA+ GRW+E   IR +MKS+G KKNPG S V++   +H
Sbjct: 513 GYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 69  128
           
Sbjct: 573 559

Query: 129 150
           
Sbjct: 633 559

BLAST of CU125445 vs. Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-10
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 3

Query: 9   GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQV 68
           G Y+++SNIYA+   WD  +KIRE+MK RG KK  GCSWVQ+ D++
Sbjct: 541 GNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKI 586

Query: 69  128
           
Sbjct: 601 586

Query: 129 147
           
Sbjct: 661 586

BLAST of CU125445 vs. Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-10
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 3

Query: 9   GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 68
           G Y+LLSNIYA  G W E + IR  M+S G KKNPGCSW+Q+ ++V+
Sbjct: 592 GTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638

Query: 69  128
           
Sbjct: 652 638

Query: 129 150
           
Sbjct: 712 638

BLAST of CU125445 vs. Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-10
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           H G Y+LLSN++A TG+W+E  ++R+LM+ RG KK   CSW+++  QVH
Sbjct: 619 HDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVH 667

Query: 63  122
           
Sbjct: 679 667

Query: 123 150
           
Sbjct: 739 667

BLAST of CU125445 vs. Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-10
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 3

Query: 9   GYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 68
           G Y LLSNIYA + +WD   +IR  M+ RG KK PGCSW+++  Q+H
Sbjct: 462 GTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIH 508

Query: 69  128
           
Sbjct: 522 508

Query: 129 150
           
Sbjct: 582 508

BLAST of CU125445 vs. TrEMBL
Match: A0A0A0KEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G428560 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.7e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH
Sbjct: 764 HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 812

Query: 63  122
           
Sbjct: 824 812

Query: 123 150
           
Sbjct: 884 812

BLAST of CU125445 vs. TrEMBL
Match: A0A072UUM5_MEDTR (Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_3g045450 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.5e-19
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE GRWDEAN +RELMKSRGAKKNPGCSWVQI DQVH
Sbjct: 741 HCGYYILLSNMYAEAGRWDEANMVRELMKSRGAKKNPGCSWVQIGDQVH 789

Query: 63  122
           
Sbjct: 801 789

Query: 123 150
           
Sbjct: 861 789

BLAST of CU125445 vs. TrEMBL
Match: A0A0R0E6Q8_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_20G044000 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-18
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE  RWDEANK+R+LMKSRGAKKNPGCSWVQI DQVH
Sbjct: 666 HCGYYILLSNMYAEAVRWDEANKVRKLMKSRGAKKNPGCSWVQIGDQVH 714

Query: 63  122
           
Sbjct: 726 714

Query: 123 150
           
Sbjct: 786 714

BLAST of CU125445 vs. TrEMBL
Match: K7N1H5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-18
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE  RWDEANK+R+LMKSRGAKKNPGCSWVQI DQVH
Sbjct: 608 HCGYYILLSNMYAEAVRWDEANKVRKLMKSRGAKKNPGCSWVQIGDQVH 656

Query: 63  122
           
Sbjct: 668 656

Query: 123 150
           
Sbjct: 728 656

BLAST of CU125445 vs. TrEMBL
Match: A0A151UEI8_CAJCA (Putative pentatricopeptide repeat-containing protein At3g49140 family (Fragment) OS=Cajanus cajan GN=KK1_050377 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE  RWDEANK+RELMKSRGAKKNPGCSWVQ  DQVH
Sbjct: 125 HCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQTGDQVH 173

Query: 63  122
           
Sbjct: 185 173

Query: 123 150
           
Sbjct: 245 173

BLAST of CU125445 vs. NCBI nr
Match: gi|449445027|ref|XP_004140275.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH
Sbjct: 764 HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 812

Query: 63  122
           
Sbjct: 824 812

Query: 123 150
           
Sbjct: 884 812

BLAST of CU125445 vs. NCBI nr
Match: gi|659097428|ref|XP_008449620.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-21
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSNIYAETGRWDEAN+IRELMKSRGAKKNPGCSWVQI DQVH
Sbjct: 764 HCGYYILLSNIYAETGRWDEANRIRELMKSRGAKKNPGCSWVQICDQVH 812

Query: 63  122
           
Sbjct: 824 812

Query: 123 150
           
Sbjct: 884 812

BLAST of CU125445 vs. NCBI nr
Match: gi|922378529|ref|XP_013459503.1| (pentatricopeptide (PPR) repeat protein [Medicago truncatula])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-19
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE GRWDEAN +RELMKSRGAKKNPGCSWVQI DQVH
Sbjct: 741 HCGYYILLSNMYAEAGRWDEANMVRELMKSRGAKKNPGCSWVQIGDQVH 789

Query: 63  122
           
Sbjct: 801 789

Query: 123 150
           
Sbjct: 861 789

BLAST of CU125445 vs. NCBI nr
Match: gi|947040000|gb|KRG89724.1| (hypothetical protein GLYMA_20G044000, partial [Glycine max])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE  RWDEANK+R+LMKSRGAKKNPGCSWVQI DQVH
Sbjct: 666 HCGYYILLSNMYAEAVRWDEANKVRKLMKSRGAKKNPGCSWVQIGDQVH 714

Query: 63  122
           
Sbjct: 726 714

Query: 123 150
           
Sbjct: 786 714

BLAST of CU125445 vs. NCBI nr
Match: gi|1012366519|gb|KYP77700.1| (Putative pentatricopeptide repeat-containing protein At3g49140 family, partial [Cajanus cajan])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 3

Query: 3   HCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVH 62
           HCGYYILLSN+YAE  RWDEANK+RELMKSRGAKKNPGCSWVQ  DQVH
Sbjct: 125 HCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQTGDQVH 173

Query: 63  122
           
Sbjct: 185 173

Query: 123 150
           
Sbjct: 245 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP271_ARATH1.1e-1059.57Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th... [more]
PP229_ARATH1.1e-1056.52Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN... [more]
PPR53_ARATH3.2e-1057.45Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN... [more]
PPR57_ARATH5.5e-1051.02Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN... [more]
PP147_ARATH7.2e-1053.19Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A0A0KEH6_CUCSA5.7e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G428560 PE=4 SV=1[more]
A0A072UUM5_MEDTR4.5e-1989.80Pentatricopeptide (PPR) repeat protein OS=Medicago truncatula GN=MTR_3g045450 PE... [more]
A0A0R0E6Q8_SOYBN2.9e-1887.76Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_20G044000 PE=4 SV=1[more]
K7N1H5_SOYBN2.9e-1887.76Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A151UEI8_CAJCA2.9e-1887.76Putative pentatricopeptide repeat-containing protein At3g49140 family (Fragment)... [more]
Match NameE-valueIdentityDescription
gi|449445027|ref|XP_004140275.1|2.2e-22100.00PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Cucumis sativu... [more]
gi|659097428|ref|XP_008449620.1|5.3e-2195.92PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitoc... [more]
gi|922378529|ref|XP_013459503.1|1.7e-1989.80pentatricopeptide (PPR) repeat protein [Medicago truncatula][more]
gi|947040000|gb|KRG89724.1|1.1e-1887.76hypothetical protein GLYMA_20G044000, partial [Glycine max][more]
gi|1012366519|gb|KYP77700.1|1.1e-1887.76Putative pentatricopeptide repeat-containing protein At3g49140 family, partial [... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G428560Csa6G428560gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02LD2DQFKNP3UI02LD2DQEST