CU124852 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU124852
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 1816091 .. 1816331 (-)
Sequence length	240

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTCCGAGAGGAGAAAGTCTCTATAGAAATGGTGTTAATTACATCAACTCTGCATTCACAGTTTGCTCGAACAACTCTATACACAATATCTCCACAATCTAAGCCGGGGTCTTCTGTAATGAATGCGGTACATAGATATTTGTAGTGCTTTTGAGGTTGAGGAAGTTGGCGTCGGTACTTGGTGACAGAATCCCAGACATAATAATGTTTAGGGTGACGACCGCAGAGAAGAAGCCCATCA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU124852 vs. Swiss-Prot
Match: FB251_ARATH (F-box protein At5g03970 OS=Arabidopsis thaliana GN=At5g03970 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-14
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPK YY+WD  T+ ++QLP+P+ H++ LC + I+ED   D G   Y+VVRA 
Sbjct: 130 DGLLLCGRHPKAYYLWDPSTQKQQQLPRPRVHFEELCMSLISED-SPDQG-FSYKVVRAE 189

Query: 63  CECRVDVINTISIETFSSR 122
           C         + +ETFSS+
Sbjct: 190 CVAFPVNSTKVKVETFSSK 206

Query: 123  182
           
Sbjct: 250  206

Query: 183  240
           
Sbjct: 310  206

[Close]

BLAST of CU124852 vs. TrEMBL
Match: A0A0A0LJ78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010130 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 6.8e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN
Sbjct: 171 DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 230

Query: 63  CECRVDVINTISIETFSSR 122
           CECRVDVINTISIETFSSR
Sbjct: 231 CECRVDVINTISIETFSSR 249

Query: 123  182
           
Sbjct: 291  249

Query: 183  240
           
Sbjct: 351  249

[Close]

BLAST of CU124852 vs. TrEMBL
Match: A0A061F904_THECC (F-box associated ubiquitination effector family protein, putative OS=Theobroma cacao GN=TCM_026258 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.2e-18
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           +GLLLCGRHPK YYVWD VTK + +LP+P+ +++ LC A I ED      DI YRV+RA 
Sbjct: 123 NGLLLCGRHPKAYYVWDPVTKQQNKLPRPRVYFEELCMALIVEDS--PDNDICYRVIRAK 182

Query: 63  CECRVDVINTISIETFSSR 122
           CE R D IN ++IETFSS+
Sbjct: 183 CESRFDEINIVTIETFSSK 199

Query: 123  182
           
Sbjct: 243  199

Query: 183  240
           
Sbjct: 303  199

[Close]

BLAST of CU124852 vs. TrEMBL
Match: A0A0B0MMB6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_17408 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPK Y+VW+ +TK + +LP P+ H++ LC AFI ED   D  +I YRVVRA 
Sbjct: 149 DGLLLCGRHPKTYFVWNPITKQQHKLPHPRVHFEELCMAFIVEDSPDD--EICYRVVRAK 208

Query: 63  CECRVDVINTISIETFSSR 122
           CE R + +N ++IETF S+
Sbjct: 209 CESRFEEVNVVTIETFLSK 225

Query: 123  182
           
Sbjct: 269  225

Query: 183  240
           
Sbjct: 329  225

[Close]

BLAST of CU124852 vs. TrEMBL
Match: A0A0D2RAE1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248800 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPK Y+VW+ +TK + +LP P+ H++ LC AFI ED   D  +I YRVVRA 
Sbjct: 123 DGLLLCGRHPKTYFVWNPITKQQYKLPHPRVHFEELCMAFIVEDSPDD--EICYRVVRAK 182

Query: 63  CECRVDVINTISIETFSSR 122
           CE R + +  ++IETF S+
Sbjct: 183 CESRFEEVYVVTIETFLSK 199

Query: 123  182
           
Sbjct: 243  199

Query: 183  240
           
Sbjct: 303  199

[Close]

BLAST of CU124852 vs. TrEMBL
Match: A0A067DMU2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0151482mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-16
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           +GLLLCGRHPK YYVWD +TK + +LP+P+ +++ LC AFI ED   D   + Y+V+RA 
Sbjct: 131 NGLLLCGRHPKSYYVWDPITKQQHKLPRPRVYFEELCMAFIVEDSPDD--SMCYKVIRAK 190

Query: 63  CECRVDVINTISIETFSSR 122
            EC+ D  N+++IETF S+
Sbjct: 191 SECKHDKANSVTIETFLSK 207

Query: 123  182
           
Sbjct: 251  207

Query: 183  240
           
Sbjct: 311  207

[Close]

BLAST of CU124852 vs. NCBI nr
Match: gi|778666414|ref|XP_011648736.1| (PREDICTED: F-box protein At5g03970 isoform X2 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.6e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN
Sbjct: 117 DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 176

Query: 63  CECRVDVINTISIETFSSR 122
           CECRVDVINTISIETFSSR
Sbjct: 177 CECRVDVINTISIETFSSR 195

Query: 123  182
           
Sbjct: 237  195

Query: 183  240
           
Sbjct: 297  195

[Close]

BLAST of CU124852 vs. NCBI nr
Match: gi|778666410|ref|XP_004139251.2| (PREDICTED: F-box protein At5g03970 isoform X1 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.6e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN
Sbjct: 156 DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 215

Query: 63  CECRVDVINTISIETFSSR 122
           CECRVDVINTISIETFSSR
Sbjct: 216 CECRVDVINTISIETFSSR 234

Query: 123  182
           
Sbjct: 276  234

Query: 183  240
           
Sbjct: 336  234

[Close]

BLAST of CU124852 vs. NCBI nr
Match: gi|700205658|gb|KGN60777.1| (hypothetical protein Csa_2G010130 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.6e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN
Sbjct: 171 DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 230

Query: 63  CECRVDVINTISIETFSSR 122
           CECRVDVINTISIETFSSR
Sbjct: 231 CECRVDVINTISIETFSSR 249

Query: 123  182
           
Sbjct: 291  249

Query: 183  240
           
Sbjct: 351  249

[Close]

BLAST of CU124852 vs. NCBI nr
Match: gi|659070719|ref|XP_008456330.1| (PREDICTED: F-box protein At5g03970 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-40
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           DGLLLCGRHPKHYY+WDSVTKYRRQLPQPQKHYKYLCTAFITEDPG DCGDIVYRVVRAN
Sbjct: 156 DGLLLCGRHPKHYYIWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGPDCGDIVYRVVRAN 215

Query: 63  CECRVDVINTISIETFSSR 122
           CECRVDVINTISIETFSSR
Sbjct: 216 CECRVDVINTISIETFSSR 234

Query: 123  182
           
Sbjct: 276  234

Query: 183  240
           
Sbjct: 336  234

[Close]

BLAST of CU124852 vs. NCBI nr
Match: gi|590642345|ref|XP_007030492.1| (F-box associated ubiquitination effector family protein, putative [Theobroma cacao])

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-18
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = -2


Query: 3   DGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFITEDPGLDCGDIVYRVVRAN 62
           +GLLLCGRHPK YYVWD VTK + +LP+P+ +++ LC A I ED      DI YRV+RA 
Sbjct: 123 NGLLLCGRHPKAYYVWDPVTKQQNKLPRPRVYFEELCMALIVEDS--PDNDICYRVIRAK 182

Query: 63  CECRVDVINTISIETFSSR 122
           CE R D IN ++IETFSS+
Sbjct: 183 CESRFDEINIVTIETFSSK 199

Query: 123  182
           
Sbjct: 243  199

Query: 183  240
           
Sbjct: 303  199

The following BLAST results are available for this feature:

BLAST of CU124852 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB251_ARATH	5.9e-14	49.37	F-box protein At5g03970 OS=Arabidopsis thaliana GN=At5g03970 PE=2 SV=1	[more]

BLAST of CU124852 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ78_CUCSA	6.8e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010130 PE=4 SV=1	[more]
A0A061F904_THECC	6.2e-18	58.23	F-box associated ubiquitination effector family protein, putative OS=Theobroma c...	[more]
A0A0B0MMB6_GOSAR	1.4e-17	55.70	Uncharacterized protein OS=Gossypium arboreum GN=F383_17408 PE=4 SV=1	[more]
A0A0D2RAE1_GOSRA	2.0e-16	54.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G248800 PE=4 SV=1	[more]
A0A067DMU2_CITSI	4.4e-16	51.90	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0151482mg PE=4 SV=1	[more]

BLAST of CU124852 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666414\|ref\|XP_011648736.1\|	2.6e-41	100.00	PREDICTED: F-box protein At5g03970 isoform X2 [Cucumis sativus]	[more]
gi\|778666410\|ref\|XP_004139251.2\|	2.6e-41	100.00	PREDICTED: F-box protein At5g03970 isoform X1 [Cucumis sativus]	[more]
gi\|700205658\|gb\|KGN60777.1\|	2.6e-41	100.00	hypothetical protein Csa_2G010130 [Cucumis sativus]	[more]
gi\|659070719\|ref\|XP_008456330.1\|	2.2e-40	97.47	PREDICTED: F-box protein At5g03970 [Cucumis melo]	[more]
gi\|590642345\|ref\|XP_007030492.1\|	3.0e-18	58.23	F-box associated ubiquitination effector family protein, putative [Theobroma cac...	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G010130	Csa2G010130	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02L4Q8U	FKNP3UI02L4Q8U	EST