CU124451 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU124451
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 4595962 .. 4596368 (+)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTCACCACATAGCTTCTTCTGCCTGCAGAAATGGCAACAGATTCCAAAAACAGGATCATAAACGCCCCCTCGTCCCTTACTATTACACCTCCGTGCCGACGCATCCGGCGAAGTCCAATGTTCCGAATTACTAATCTTCACTAAAGGAGCATTCGCAGGCCGATTCACAACCTCTCCCTCCACTTCATTACAGTCTAGAACTAATTTCCTCTTCAGTCTGTCGGACCTCCGGAAGGAAATCTGGCAACG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU124451 vs. TrEMBL
Match: A0A0A0LQX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042940 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-41
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = -1


Query: 1   RCQISFRRSDRLKRKLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR 60
           RCQISFRRSDRLKRKLVLD NEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR
Sbjct: 82  RCQISFRRSDRLKRKLVLDSNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR 141

Query: 61  GGVYDPVFGICCHFCRQKKLCGE 120
           GGVYDPVFGICCHFCRQKKLCGE
Sbjct: 142 GGVYDPVFGICCHFCRQKKLCGE 164

Query: 121  180
           
Sbjct: 202  164

Query: 181  240
           
Sbjct: 262  164

Query: 241  250
           
Sbjct: 322  164

[Close]

BLAST of CU124451 vs. TrEMBL
Match: A0A067KIE9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11902 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-18
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = -1


Query: 1   RRSDRLKRKLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGRGGVYDP 60
           RRS+RL R    +   +  E  NRPANAPLVK        SP+ASARRCNSKGRG +YDP
Sbjct: 91  RRSNRLLRTNSTEPISLIEEEENRPANAPLVK-GAEVLCLSPEASARRCNSKGRGSIYDP 150

Query: 61  VFGICCHFCRQKKLCGE 120
           VFGICCHFCRQKKLCGE
Sbjct: 151 VFGICCHFCRQKKLCGE 166

Query: 121  180
           
Sbjct: 211  166

Query: 181  232
           
Sbjct: 271  166

[Close]

BLAST of CU124451 vs. TrEMBL
Match: A0A059AV03_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00548 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-17
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = -1


Query: 1   RPANAPLVKISNSEHWTSPDASARRCNSKGRGGVYDPVFGICCHFCRQKKLCGE 60
           RPAN PL+K+   E+  SPDAS+RRCNSKGRG VYDPVFGI CHFCRQKKLCGE
Sbjct: 155 RPANKPLLKLQGLEYQLSPDASSRRCNSKGRGSVYDPVFGISCHFCRQKKLCGE 208

Query: 61   120
           
Sbjct: 215  208

Query: 121  163
           
Sbjct: 275  208

[Close]

BLAST of CU124451 vs. TrEMBL
Match: A0A0R0IJV6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G173700 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-17
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = -1


Query: 1   FRRSDRLKR-KLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGRGGVY 60
           F+ S  +K+ K V  C E E E   RPANAP + +SN++   S ++SARRC+SKGRG VY
Sbjct: 98  FQPSTPIKQEKKVTVCEEKEEE--QRPANAPFINLSNADLLLSAESSARRCDSKGRGSVY 157

Query: 61  DPVFGICCHFCRQKKLCGE 120
           +PV GICCHFCRQKKLCGE
Sbjct: 158 NPVLGICCHFCRQKKLCGE 174

Query: 121  180
           
Sbjct: 218  174

Query: 181  235
           
Sbjct: 278  174

[Close]

BLAST of CU124451 vs. TrEMBL
Match: I1L438_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 4.2e-17
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = -1


Query: 1   FRRSDRLKR-KLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGRGGVY 60
           F+ S  +K+ K V  C E E E   RPANAP + +SN++   S ++SARRC+SKGRG VY
Sbjct: 77  FQPSTPIKQEKKVTVCEEKEEE--QRPANAPFINLSNADLLLSAESSARRCDSKGRGSVY 136

Query: 61  DPVFGICCHFCRQKKLCGE 120
           +PV GICCHFCRQKKLCGE
Sbjct: 137 NPVLGICCHFCRQKKLCGE 153

Query: 121  180
           
Sbjct: 197  153

Query: 181  235
           
Sbjct: 257  153

[Close]

BLAST of CU124451 vs. NCBI nr
Match: gi|449439477|ref|XP_004137512.1| (PREDICTED: cell division cycle-associated protein 7 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.2e-42
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = -1


Query: 1   RCQISFRRSDRLKRKLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR 60
           RCQISFRRSDRLKRKLVLD NEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR
Sbjct: 82  RCQISFRRSDRLKRKLVLDSNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR 141

Query: 61  GGVYDPVFGICCHFCRQKKLCGE 120
           GGVYDPVFGICCHFCRQKKLCGE
Sbjct: 142 GGVYDPVFGICCHFCRQKKLCGE 164

Query: 121  180
           
Sbjct: 202  164

Query: 181  240
           
Sbjct: 262  164

Query: 241  250
           
Sbjct: 322  164

[Close]

BLAST of CU124451 vs. NCBI nr
Match: gi|659066900|ref|XP_008466442.1| (PREDICTED: cell division cycle-associated protein 7-like [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 77/83 (92.77%), Postives = 77/83 (92.77%), Query Frame = -1


Query: 1   RCQISFRRSDRLKRKLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGR 60
           RCQIS RRSDRLKRKLVLDCNEVE E VNRPANAPLVKISNSE W SPDASARRCNSKGR
Sbjct: 82  RCQISPRRSDRLKRKLVLDCNEVEEENVNRPANAPLVKISNSELWLSPDASARRCNSKGR 141

Query: 61  GGVYDPVFGICCHFCRQKKLCGE 120
           G VYDPVFGICCHFCRQKKLCGE
Sbjct: 142 GSVYDPVFGICCHFCRQKKLCGE 164

Query: 121  180
           
Sbjct: 202  164

Query: 181  240
           
Sbjct: 262  164

Query: 241  250
           
Sbjct: 322  164

[Close]

BLAST of CU124451 vs. NCBI nr
Match: gi|802621118|ref|XP_012075847.1| (PREDICTED: cell division cycle-associated 7-like protein isoform X2 [Jatropha curcas])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = -1


Query: 1   RRSDRLKRKLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGRGGVYDP 60
           RRS+RL R    +   +  E  NRPANAPLVK        SP+ASARRCNSKGRG +YDP
Sbjct: 91  RRSNRLLRTNSTEPISLIEEEENRPANAPLVK-GAEVLCLSPEASARRCNSKGRGSIYDP 150

Query: 61  VFGICCHFCRQKKLCGE 120
           VFGICCHFCRQKKLCGE
Sbjct: 151 VFGICCHFCRQKKLCGE 166

Query: 121  180
           
Sbjct: 211  166

Query: 181  232
           
Sbjct: 271  166

[Close]

BLAST of CU124451 vs. NCBI nr
Match: gi|802621115|ref|XP_012075846.1| (PREDICTED: uncharacterized protein LOC105637061 isoform X1 [Jatropha curcas])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 51/77 (66.23%), Postives = 56/77 (72.73%), Query Frame = -1


Query: 1   RRSDRLKRKLVLDCNEVEGEVVNRPANAPLVKISNSEHWTSPDASARRCNSKGRGGVYDP 60
           RRS+RL R    +   +  E  NRPANAPLVK        SP+ASARRCNSKGRG +YDP
Sbjct: 91  RRSNRLLRTNSTEPISLIEEEENRPANAPLVK-GAEVLCLSPEASARRCNSKGRGSIYDP 150

Query: 61  VFGICCHFCRQKKLCGE 120
           VFGICCHFCRQKKLCGE
Sbjct: 151 VFGICCHFCRQKKLCGE 166

Query: 121  180
           
Sbjct: 211  166

Query: 181  232
           
Sbjct: 271  166

[Close]

BLAST of CU124451 vs. NCBI nr
Match: gi|1009133255|ref|XP_015883801.1| (PREDICTED: cell division cycle-associated protein 7-like [Ziziphus jujuba])

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 54/98 (55.10%), Postives = 64/98 (65.31%), Query Frame = -1


Query: 1   RRSDRLKRKLVLDC---NEVEGEVV-----------------NRPANAPLVKISNSE-HW 60
           RRSDRL RK+ ++    N + G+VV                 NRPAN PLVK++  E   
Sbjct: 88  RRSDRLGRKIKVENEKENPISGKVVVYGDGKESEHSGGSEENNRPANMPLVKMNGKEFRQ 147

Query: 61  TSPDASARRCNSKGRGGVYDPVFGICCHFCRQKKLCGE 120
            SP++S+RRCNSKGRG VYDPVFGI CHFCRQKKLCGE
Sbjct: 148 PSPESSSRRCNSKGRGSVYDPVFGISCHFCRQKKLCGE 185

Query: 121  180
           
Sbjct: 208  185

Query: 181  232
           
Sbjct: 268  185

The following BLAST results are available for this feature:

BLAST of CU124451 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQX9_CUCSA	1.1e-41	98.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042940 PE=4 SV=1	[more]
A0A067KIE9_JATCU	1.7e-18	66.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11902 PE=4 SV=1	[more]
A0A059AV03_EUCGR	1.9e-17	77.78	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00548 PE=4 SV=1	[more]
A0A0R0IJV6_SOYBN	4.2e-17	59.49	Uncharacterized protein OS=Glycine max GN=GLYMA_09G173700 PE=4 SV=1	[more]
I1L438_SOYBN	4.2e-17	59.49	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]

BLAST of CU124451 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439477\|ref\|XP_004137512.1\|	9.2e-42	98.80	PREDICTED: cell division cycle-associated protein 7 [Cucumis sativus]	[more]
gi\|659066900\|ref\|XP_008466442.1\|	2.4e-37	92.77	PREDICTED: cell division cycle-associated protein 7-like [Cucumis melo]	[more]
gi\|802621118\|ref\|XP_012075847.1\|	1.9e-18	66.23	PREDICTED: cell division cycle-associated 7-like protein isoform X2 [Jatropha cu...	[more]
gi\|802621115\|ref\|XP_012075846.1\|	1.9e-18	66.23	PREDICTED: uncharacterized protein LOC105637061 isoform X1 [Jatropha curcas]	[more]
gi\|1009133255\|ref\|XP_015883801.1\|	2.4e-18	55.10	PREDICTED: cell division cycle-associated protein 7-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G042940	Csa1G042940	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KYUFE	FKNP3UI02KYUFE	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31169	FAMILY NOT NAMED	coord: 5..83 score: 7.4
None	No IPR available	PANTHER	PTHR31169:SF6	SUBFAMILY NOT NAMED	coord: 5..83 score: 7.4