CU124330 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU124330
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 2965050 .. 2965832 (-)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGCAATCTCTGGTCTCCTACCCAACTCGATGGGTATATGAACTCAAATCCTTCATTGGGATCAATGCACCGACTGTATCCTCCAATTGGATAAACAACATCCACTCTCAACCGCCGACTGTTTTCCGGTGACAAGCCGAGCAGGAAGCTCGTCACGCCGCCGAAATTTGCGCCGATGGCTACCAAAGAAGCCGACCCGATCCCAACTATTAGCCTCCGCCGAAATGTCACTGCCAGCGGTGCG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU124330 vs. Swiss-Prot
Match: PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-27
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           +PL   F RRL++G+GS+S++AIGANFGG TSF+LGLSP   R L++DV+YPIGGYSRCI
Sbjct: 41  SPLVEKFNRRLLLGVGSSSVLAIGANFGGTTSFILGLSPGIGRNLKLDVIYPIGGYSRCI 100

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           D  EGFEFIYP++WVGDQ L
Sbjct: 101 DTVEGFEFIYPATWVGDQTL 120

Query: 123  182
           
Sbjct: 161  120

Query: 183  242
           
Sbjct: 221  120

[Close]

BLAST of CU124330 vs. TrEMBL
Match: A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI
Sbjct: 39  APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 98

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           DPNEGFEFIYPSSWVGDQRL
Sbjct: 99  DPNEGFEFIYPSSWVGDQRL 118

Query: 123  182
           
Sbjct: 159  118

Query: 183  242
           
Sbjct: 219  118

[Close]

BLAST of CU124330 vs. TrEMBL
Match: W9QGT7_9ROSA (PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA TFRRRL+VG+GSASLVA+GANF GVTSFLLGLSPE SR L++DVVYPI GY+RCI
Sbjct: 44  APLAATFRRRLLVGLGSASLVAVGANFAGVTSFLLGLSPETSRNLKLDVVYPIDGYNRCI 103

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           D NEGFEFIYP+ WVGDQRL
Sbjct: 104 DTNEGFEFIYPARWVGDQRL 123

Query: 123  182
           
Sbjct: 164  123

Query: 183  242
           
Sbjct: 224  123

[Close]

BLAST of CU124330 vs. TrEMBL
Match: A0A067JHS1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23329 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA  FRRRL+VGIGSASLVA+GANFGGVTSFLLGLSPE  R L++DV+YPIGGYSRCI
Sbjct: 10  APLASNFRRRLLVGIGSASLVAVGANFGGVTSFLLGLSPETGRNLKLDVLYPIGGYSRCI 69

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
             NEGFEF+YPS+WVGDQ L
Sbjct: 70  QTNEGFEFVYPSNWVGDQTL 89

Query: 123  182
           
Sbjct: 130  89

Query: 183  242
           
Sbjct: 190  89

[Close]

BLAST of CU124330 vs. TrEMBL
Match: V4T5F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-30
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ R L++DV+YPIGGYSRCI
Sbjct: 48  APLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCI 107

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           D NEGFEFIYP SWVGDQ L
Sbjct: 108 DINEGFEFIYPDSWVGDQTL 127

Query: 123  182
           
Sbjct: 168  127

Query: 183  242
           
Sbjct: 228  127

[Close]

BLAST of CU124330 vs. TrEMBL
Match: A0A067EQY2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-30
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA  F RRL+VG+G+ASLVA+GANFGGVTSFLLGLSPE+ R L++DV+YPIGGYSRCI
Sbjct: 48  APLAAKFNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCI 107

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           D NEGFEFIYP SWVGDQ L
Sbjct: 108 DINEGFEFIYPDSWVGDQTL 127

Query: 123  182
           
Sbjct: 168  127

Query: 183  242
           
Sbjct: 228  127

[Close]

BLAST of CU124330 vs. NCBI nr
Match: gi|449454159|ref|XP_004144823.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI
Sbjct: 39  APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 98

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           DPNEGFEFIYPSSWVGDQRL
Sbjct: 99  DPNEGFEFIYPSSWVGDQRL 118

Query: 123  182
           
Sbjct: 159  118

Query: 183  242
           
Sbjct: 219  118

[Close]

BLAST of CU124330 vs. NCBI nr
Match: gi|659070292|ref|XP_008454379.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 5.6e-36
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA TFRRRLIVGIGSASLVA+GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC 
Sbjct: 39  APLAATFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCF 98

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           DPNEGFEFIYPSSWVGDQRL
Sbjct: 99  DPNEGFEFIYPSSWVGDQRL 118

Query: 123  182
           
Sbjct: 159  118

Query: 183  242
           
Sbjct: 219  118

[Close]

BLAST of CU124330 vs. NCBI nr
Match: gi|659070290|ref|XP_008454371.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-34
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA TFRRRLIVGIGSASLVA+GANF GVTSFLLGLSPENSRRLRVDVVYPIGGY+RC 
Sbjct: 39  APLAATFRRRLIVGIGSASLVAVGANFAGVTSFLLGLSPENSRRLRVDVVYPIGGYNRCF 98

Query: 63  DPNEGF---EFIYPSSWVGDQRL 122
           DPNEGF   EFIYPSSWVGDQRL
Sbjct: 99  DPNEGFEHPEFIYPSSWVGDQRL 121

Query: 123  182
           
Sbjct: 159  121

Query: 183  242
           
Sbjct: 219  121

[Close]

BLAST of CU124330 vs. NCBI nr
Match: gi|703071113|ref|XP_010088950.1| (PsbP-like protein 1 [Morus notabilis])

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA TFRRRL+VG+GSASLVA+GANF GVTSFLLGLSPE SR L++DVVYPI GY+RCI
Sbjct: 44  APLAATFRRRLLVGLGSASLVAVGANFAGVTSFLLGLSPETSRNLKLDVVYPIDGYNRCI 103

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
           D NEGFEFIYP+ WVGDQRL
Sbjct: 104 DTNEGFEFIYPARWVGDQRL 123

Query: 123  182
           
Sbjct: 164  123

Query: 183  242
           
Sbjct: 224  123

[Close]

BLAST of CU124330 vs. NCBI nr
Match: gi|643708580|gb|KDP23496.1| (hypothetical protein JCGZ_23329 [Jatropha curcas])

HSP 1 Score: 141.4 bits (355), Expect = 7.1e-31
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = -2


Query: 3   APLAVTFRRRLIVGIGSASLVAIGANFGGVTSFLLGLSPENSRRLRVDVVYPIGGYSRCI 62
           APLA  FRRRL+VGIGSASLVA+GANFGGVTSFLLGLSPE  R L++DV+YPIGGYSRCI
Sbjct: 10  APLASNFRRRLLVGIGSASLVAVGANFGGVTSFLLGLSPETGRNLKLDVLYPIGGYSRCI 69

Query: 63  DPNEGFEFIYPSSWVGDQRL 122
             NEGFEF+YPS+WVGDQ L
Sbjct: 70  QTNEGFEFVYPSNWVGDQTL 89

Query: 123  182
           
Sbjct: 130  89

Query: 183  242
           
Sbjct: 190  89

The following BLAST results are available for this feature:

BLAST of CU124330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPD7_ARATH	2.1e-27	68.75	PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 ...	[more]

BLAST of CU124330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGE5_CUCSA	1.2e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1	[more]
W9QGT7_9ROSA	6.4e-31	82.50	PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1	[more]
A0A067JHS1_JATCU	1.9e-30	81.25	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23329 PE=4 SV=1	[more]
V4T5F4_9ROSI	4.2e-30	80.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1	[more]
A0A067EQY2_CITSI	4.2e-30	80.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1	[more]

BLAST of CU124330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454159\|ref\|XP_004144823.1\|	4.6e-38	100.00	PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus]	[more]
gi\|659070292\|ref\|XP_008454379.1\|	5.6e-36	93.75	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis m...	[more]
gi\|659070290\|ref\|XP_008454371.1\|	2.3e-34	90.36	PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis m...	[more]
gi\|703071113\|ref\|XP_010088950.1\|	2.4e-31	82.50	PsbP-like protein 1 [Morus notabilis]	[more]
gi\|643708580\|gb\|KDP23496.1\|	7.1e-31	81.25	hypothetical protein JCGZ_23329 [Jatropha curcas]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G030040	Csa2G030040	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KWR8A	FKNP3UI02KWR8A	EST