CU124231 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU124231
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Xyloglucan 6-xylosyltransferase, putative
Location	Chr1 : 1561118 .. 1561364 (+)
Sequence length	256

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGGCCAAGTTGCCGTTTGTATCCGACGATTGATGTTGTCCCACCCTGAGGTTGAGTGGATTTGGTGGATGGACAGTGATGCTTTATTTACTGATATGGTATTTGAGATTCCTTTGGAAAAATATGATAACTATAACTTGGTCGTTCATGGTTACCCTGATTTGATGTTCAACCAAAAGTCCTGGATTGCACTCAATACAGGAAGCTTTTTGTTTAGGAATTGTCAGTGGTCTTTGGATTTGCTGGATG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU124231 vs. Swiss-Prot
Match: XXT3_ARATH (Probable xyloglucan 6-xylosyltransferase 3 OS=Arabidopsis thaliana GN=XXT3 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-38
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPE+EWIWWMDSDALFTDMVFEIPL +Y+N+NLV+HGYPDL+F+QKSWIALNT
Sbjct: 210 IRRLMLSHPEIEWIWWMDSDALFTDMVFEIPLSRYENHNLVIHGYPDLLFDQKSWIALNT 269

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 270 GSFLFRNCQWSLDLLD 285

Query: 148  207
           
Sbjct: 330  285

Query: 208  256
           
Sbjct: 390  285

[Close]

BLAST of CU124231 vs. Swiss-Prot
Match: XXT4_ARATH (Xyloglucan 6-xylosyltransferase 4 OS=Arabidopsis thaliana GN=XXT4 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-35
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IR LMLSHPEVEWIWWMDSDALFTD++FEIPL +Y+N+NLV+HGYPDL+FNQKSW+ALNT
Sbjct: 269 IRTLMLSHPEVEWIWWMDSDALFTDILFEIPLPRYENHNLVIHGYPDLLFNQKSWVALNT 328

Query: 88  GSFLFRNCQWSLDLLD 147
           G FL RNCQWSLDLLD
Sbjct: 329 GIFLLRNCQWSLDLLD 344

Query: 148  207
           
Sbjct: 389  344

Query: 208  256
           
Sbjct: 449  344

[Close]

BLAST of CU124231 vs. Swiss-Prot
Match: XXT5_ARATH (Probable xyloglucan 6-xylosyltransferase 5 OS=Arabidopsis thaliana GN=XXT5 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-35
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTD++F+IPL +Y  +NLV+HGYPDL+F+QKSWIALNT
Sbjct: 211 IRRLMLSHPEVEWIWWMDSDALFTDILFQIPLARYQKHNLVIHGYPDLLFDQKSWIALNT 270

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFL RNCQWSLDLLD
Sbjct: 271 GSFLLRNCQWSLDLLD 286

Query: 148  207
           
Sbjct: 331  286

Query: 208  256
           
Sbjct: 391  286

[Close]

BLAST of CU124231 vs. Swiss-Prot
Match: GT2_ORYSI (Probable glycosyltransferase 2 OS=Oryza sativa subsp. indica GN=GT2 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-33
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           +RRLMLSHPEVEWIWWMDSDALFTDM FE+PL +Y + NL++HGY DL+F + SWIALNT
Sbjct: 237 LRRLMLSHPEVEWIWWMDSDALFTDMAFELPLSRYQDRNLIIHGYQDLLFEKHSWIALNT 296

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 297 GSFLFRNCQWSLDLLD 312

Query: 148  207
           
Sbjct: 357  312

Query: 208  256
           
Sbjct: 417  312

[Close]

BLAST of CU124231 vs. Swiss-Prot
Match: GT2_ORYSJ (Probable glycosyltransferase 2 OS=Oryza sativa subsp. japonica GN=GT2 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-33
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           +RRLMLSHPEVEWIWWMDSDALFTDM FE+PL +Y + NL++HGY DL+F + SWIALNT
Sbjct: 237 LRRLMLSHPEVEWIWWMDSDALFTDMAFELPLSRYQDRNLIIHGYQDLLFEKHSWIALNT 296

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 297 GSFLFRNCQWSLDLLD 312

Query: 148  207
           
Sbjct: 357  312

Query: 208  256
           
Sbjct: 417  312

[Close]

BLAST of CU124231 vs. TrEMBL
Match: A0A0A0LP65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G010930 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 211 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 270

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 271 GSFLFRNCQWSLDLLD 286

Query: 148  207
           
Sbjct: 331  286

Query: 208  256
           
Sbjct: 391  286

[Close]

BLAST of CU124231 vs. TrEMBL
Match: A0A0A0LRQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009930 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 211 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 270

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 271 GSFLFRNCQWSLDLLD 286

Query: 148  207
           
Sbjct: 331  286

Query: 208  256
           
Sbjct: 391  286

[Close]

BLAST of CU124231 vs. TrEMBL
Match: F6GT58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06590 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPL KYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 205 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPDLMFNQKSWIALNT 264

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 265 GSFLFRNCQWSLDLLD 280

Query: 148  207
           
Sbjct: 325  280

Query: 208  256
           
Sbjct: 385  280

[Close]

BLAST of CU124231 vs. TrEMBL
Match: A5B3I5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027037 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPL KYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 205 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPDLMFNQKSWIALNT 264

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 265 GSFLFRNCQWSLDLLD 280

Query: 148  207
           
Sbjct: 325  280

Query: 208  256
           
Sbjct: 385  280

[Close]

BLAST of CU124231 vs. TrEMBL
Match: W9QRS3_9ROSA (Putative glycosyltransferase 5 OS=Morus notabilis GN=L484_008579 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.2e-37
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPL+KYD+YNLVVHGYPDLMF QKSWIALNT
Sbjct: 211 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLKKYDSYNLVVHGYPDLMFEQKSWIALNT 270

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 271 GSFLFRNCQWSLDLLD 286

Query: 148  207
           
Sbjct: 331  286

Query: 208  256
           
Sbjct: 391  286

[Close]

BLAST of CU124231 vs. NCBI nr
Match: gi|449440812|ref|XP_004138178.1| (PREDICTED: putative glycosyltransferase 5 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 211 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 270

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 271 GSFLFRNCQWSLDLLD 286

Query: 148  207
           
Sbjct: 331  286

Query: 208  256
           
Sbjct: 391  286

[Close]

BLAST of CU124231 vs. NCBI nr
Match: gi|449440814|ref|XP_004138179.1| (PREDICTED: putative glycosyltransferase 5 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 211 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 270

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 271 GSFLFRNCQWSLDLLD 286

Query: 148  207
           
Sbjct: 331  286

Query: 208  256
           
Sbjct: 391  286

[Close]

BLAST of CU124231 vs. NCBI nr
Match: gi|225457345|ref|XP_002284667.1| (PREDICTED: putative glycosyltransferase 5 [Vitis vinifera])

HSP 1 Score: 168.3 bits (425), Expect = 5.7e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPL KYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 205 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPDLMFNQKSWIALNT 264

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 265 GSFLFRNCQWSLDLLD 280

Query: 148  207
           
Sbjct: 325  280

Query: 208  256
           
Sbjct: 385  280

[Close]

BLAST of CU124231 vs. NCBI nr
Match: gi|297733940|emb|CBI15187.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 168.3 bits (425), Expect = 5.7e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPL KYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 80  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPDLMFNQKSWIALNT 139

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 140 GSFLFRNCQWSLDLLD 155

Query: 148  207
           
Sbjct: 200  155

Query: 208  256
           
Sbjct: 260  155

[Close]

BLAST of CU124231 vs. NCBI nr
Match: gi|147855862|emb|CAN80739.1| (hypothetical protein VITISV_027037 [Vitis vinifera])

HSP 1 Score: 168.3 bits (425), Expect = 5.7e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1


Query: 28  IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLEKYDNYNLVVHGYPDLMFNQKSWIALNT 87
           IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPL KYDNYNLVVHGYPDLMFNQKSWIALNT
Sbjct: 205 IRRLMLSHPEVEWIWWMDSDALFTDMVFEIPLSKYDNYNLVVHGYPDLMFNQKSWIALNT 264

Query: 88  GSFLFRNCQWSLDLLD 147
           GSFLFRNCQWSLDLLD
Sbjct: 265 GSFLFRNCQWSLDLLD 280

Query: 148  207
           
Sbjct: 325  280

Query: 208  256
           
Sbjct: 385  280

The following BLAST results are available for this feature:

BLAST of CU124231 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XXT3_ARATH	4.9e-38	89.47	Probable xyloglucan 6-xylosyltransferase 3 OS=Arabidopsis thaliana GN=XXT3 PE=2 ...	[more]
XXT4_ARATH	1.3e-35	84.21	Xyloglucan 6-xylosyltransferase 4 OS=Arabidopsis thaliana GN=XXT4 PE=1 SV=1	[more]
XXT5_ARATH	2.9e-35	84.21	Probable xyloglucan 6-xylosyltransferase 5 OS=Arabidopsis thaliana GN=XXT5 PE=1 ...	[more]
GT2_ORYSI	1.2e-33	80.26	Probable glycosyltransferase 2 OS=Oryza sativa subsp. indica GN=GT2 PE=3 SV=1	[more]
GT2_ORYSJ	1.2e-33	80.26	Probable glycosyltransferase 2 OS=Oryza sativa subsp. japonica GN=GT2 PE=2 SV=1	[more]

BLAST of CU124231 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP65_CUCSA	4.0e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G010930 PE=4 SV=1	[more]
A0A0A0LRQ8_CUCSA	4.0e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009930 PE=4 SV=1	[more]
F6GT58_VITVI	1.5e-38	98.68	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06590 PE=4 SV=...	[more]
A5B3I5_VITVI	1.5e-38	98.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027037 PE=4 SV=1	[more]
W9QRS3_9ROSA	2.2e-37	96.05	Putative glycosyltransferase 5 OS=Morus notabilis GN=L484_008579 PE=4 SV=1	[more]

BLAST of CU124231 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440812\|ref\|XP_004138178.1\|	1.5e-39	100.00	PREDICTED: putative glycosyltransferase 5 [Cucumis sativus]	[more]
gi\|449440814\|ref\|XP_004138179.1\|	1.5e-39	100.00	PREDICTED: putative glycosyltransferase 5 [Cucumis sativus]	[more]
gi\|225457345\|ref\|XP_002284667.1\|	5.7e-39	98.68	PREDICTED: putative glycosyltransferase 5 [Vitis vinifera]	[more]
gi\|297733940\|emb\|CBI15187.3\|	5.7e-39	98.68	unnamed protein product [Vitis vinifera]	[more]
gi\|147855862\|emb\|CAN80739.1\|	5.7e-39	98.68	hypothetical protein VITISV_027037 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR008630	Glyco_trans_34

Vocabulary: **Molecular Function**
Term	Definition
GO:0016757	transferase activity, transferring glycosyl groups

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G010930	Csa1G010930	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KVAHR	FKNP3UI02KVAHR	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008630	Glycosyltransferase 34	PFAM	PF05637	Glyco_transf_34	coord: 9..85 score: 3.1
None	No IPR available	PANTHER	PTHR31311	FAMILY NOT NAMED	coord: 10..85 score: 1.6
None	No IPR available	PANTHER	PTHR31311:SF4	GLYCOSYLTRANSFERASE 3-RELATED	coord: 10..85 score: 1.6