CU124034 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU124034
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATPase family protein
Location	Chr4 : 19561885 .. 19563234 (-)
Sequence length	232

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGATTCACTGAGGATGGCCGTGAAGCTAGAGCTGCTGGTGCAGGACCAATCTTAGGTGATTGGGGAAGTGGATATGGGATAGCTGCACAGGCGTTAACTGCAATAATTAGGGCTCATGATGGACGAGGTCCTCATACAAAGCTTACTTATAGCATTTTGAAGACACTCGACCTTTCTTCCCCAGATGAACTAATAGGGTGGACATATGCGGATCCATCATGGCG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU124034 vs. Swiss-Prot
Match: NAGK_DICDI (N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 30/77 (38.96%), Postives = 39/77 (50.65%), Query Frame = 3


Query: 9   GFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDLSS 68
           GF  +          P+LGD+GSGY I    L  +++A D  GP T LT  +L+ L L+ 
Sbjct: 141 GFNREGVSGRSGGWGPLLGDYGSGYQIGYDILRHVLKAKDQVGPKTSLTQVLLEKLQLTK 200

Query: 69  PDELIGWTYADP---SW 128
            ++LI W Y DP   SW
Sbjct: 201 EEDLISWAY-DPKTQSW 216

Query: 129  188
           
Sbjct: 261  216

Query: 189  231
           
Sbjct: 321  216

[Close]

BLAST of CU124034 vs. TrEMBL
Match: E0CTZ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01190 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-26
Identity = 58/76 (76.32%), Postives = 61/76 (80.26%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          PILGDWGSGYGIAAQALTA++RAHDGRGP T LTYSIL+ L L
Sbjct: 162 AYGFTEDGREARAAGAGPILGDWGSGYGIAAQALTAVVRAHDGRGPQTALTYSILRALSL 221

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTYADPSW
Sbjct: 222 SSPDELIGWTYADPSW 237

Query: 123  182
           
Sbjct: 282  237

Query: 183  231
           
Sbjct: 342  237

[Close]

BLAST of CU124034 vs. TrEMBL
Match: M0T1Y7_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-24
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          P+LGDWGSGYGIAAQALTA+IRAHDGRGP TKLT SIL  L+L
Sbjct: 157 AYGFTEDGKEARAAGAGPVLGDWGSGYGIAAQALTAVIRAHDGRGPQTKLTKSILDMLEL 216

Query: 63  SSPDELIGWTYADPSW 122
            SPDELIGWTYADPSW
Sbjct: 217 PSPDELIGWTYADPSW 232

Query: 123  182
           
Sbjct: 277  232

Query: 183  231
           
Sbjct: 337  232

[Close]

BLAST of CU124034 vs. TrEMBL
Match: A0A068V829_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017091001 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-24
Identity = 56/76 (73.68%), Postives = 59/76 (77.63%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A G+TED          P+LGDWGSGYGIAAQALTAI+RAHDGRGPHT LT  IL  LDL
Sbjct: 177 AYGYTEDGRKAWAAGAGPVLGDWGSGYGIAAQALTAIVRAHDGRGPHTALTNCILHALDL 236

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTY DPSW
Sbjct: 237 SSPDELIGWTYEDPSW 252

Query: 123  182
           
Sbjct: 297  252

Query: 183  231
           
Sbjct: 357  252

[Close]

BLAST of CU124034 vs. TrEMBL
Match: A0A0D6QXB0_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          PILGDWGSGYGIAAQALTA++RAHDGRGP T LTY+IL+ L L
Sbjct: 161 AYGFTEDGREARAAGAGPILGDWGSGYGIAAQALTAVVRAHDGRGPPTALTYAILEKLRL 220

Query: 63  SSPDELIGWTYADPSW 122
           SSPDE+IGWTYADPSW
Sbjct: 221 SSPDEVIGWTYADPSW 236

Query: 123  182
           
Sbjct: 281  236

Query: 183  231
           
Sbjct: 341  236

[Close]

BLAST of CU124034 vs. TrEMBL
Match: A0A022RT39_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023787mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-24
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          P+LGDWGSGYGIAAQALTA+IRAHDGRGP T LT SIL TL L
Sbjct: 165 AYGFTEDGRQARAAGAGPVLGDWGSGYGIAAQALTAVIRAHDGRGPLTTLTNSILDTLKL 224

Query: 63  SSPDELIGWTYADPSW 122
           SSPD+LIGWTYADPSW
Sbjct: 225 SSPDQLIGWTYADPSW 240

Query: 123  182
           
Sbjct: 285  240

Query: 183  231
           
Sbjct: 345  240

[Close]

BLAST of CU124034 vs. NCBI nr
Match: gi|659129372|ref|XP_008464652.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 65/76 (85.53%), Postives = 65/76 (85.53%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          PILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL
Sbjct: 159 AYGFTEDGREARAAGAGPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 218

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTYADPSW
Sbjct: 219 SSPDELIGWTYADPSW 234

Query: 123  182
           
Sbjct: 279  234

Query: 183  231
           
Sbjct: 339  234

[Close]

BLAST of CU124034 vs. NCBI nr
Match: gi|449463605|ref|XP_004149522.1| (PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-29
Identity = 64/76 (84.21%), Postives = 64/76 (84.21%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          PILGDWGSGYGIAAQALTAIIRAHDG GPHTKLTYSILKTLDL
Sbjct: 159 AYGFTEDGREARAAGAGPILGDWGSGYGIAAQALTAIIRAHDGXGPHTKLTYSILKTLDL 218

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTYADPSW
Sbjct: 219 SSPDELIGWTYADPSW 234

Query: 123  182
           
Sbjct: 279  234

Query: 183  231
           
Sbjct: 339  234

[Close]

BLAST of CU124034 vs. NCBI nr
Match: gi|359485331|ref|XP_002278295.2| (PREDICTED: N-acetyl-D-glucosamine kinase [Vitis vinifera])

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-26
Identity = 58/76 (76.32%), Postives = 61/76 (80.26%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          PILGDWGSGYGIAAQALTA++RAHDGRGP T LTYSIL+ L L
Sbjct: 162 AYGFTEDGREARAAGAGPILGDWGSGYGIAAQALTAVVRAHDGRGPQTALTYSILRALSL 221

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTYADPSW
Sbjct: 222 SSPDELIGWTYADPSW 237

Query: 123  182
           
Sbjct: 282  237

Query: 183  231
           
Sbjct: 342  237

[Close]

BLAST of CU124034 vs. NCBI nr
Match: gi|747076711|ref|XP_011085437.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like isoform X1 [Sesamum indicum])

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-26
Identity = 58/76 (76.32%), Postives = 62/76 (81.58%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          P+LGDWGSGYGIAAQALTA+IRAHDGRGP T LT+SIL TL+L
Sbjct: 179 AYGFTEDGREARAAGAGPVLGDWGSGYGIAAQALTAVIRAHDGRGPETTLTHSILDTLNL 238

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTYADPSW
Sbjct: 239 SSPDELIGWTYADPSW 254

Query: 123  182
           
Sbjct: 299  254

Query: 183  231
           
Sbjct: 359  254

[Close]

BLAST of CU124034 vs. NCBI nr
Match: gi|743875408|ref|XP_010907330.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like [Elaeis guineensis])

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-25
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 3


Query: 3   AGGFTEDXXXXXXXXXXPILGDWGSGYGIAAQALTAIIRAHDGRGPHTKLTYSILKTLDL 62
           A GFTED          P+LGDWGSGYGIAA+ALTA++RAHDGRGP TKLTY+IL  L +
Sbjct: 163 AYGFTEDGREARAAGAGPVLGDWGSGYGIAAKALTAVVRAHDGRGPQTKLTYNILNELGV 222

Query: 63  SSPDELIGWTYADPSW 122
           SSPDELIGWTYADPSW
Sbjct: 223 SSPDELIGWTYADPSW 238

Query: 123  182
           
Sbjct: 283  238

Query: 183  231
           
Sbjct: 343  238

The following BLAST results are available for this feature:

BLAST of CU124034 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NAGK_DICDI	1.8e-07	38.96	N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2	[more]

BLAST of CU124034 vs. TrEMBL


Match Name	E-value	Identity	Description
E0CTZ3_VITVI	7.7e-26	76.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01190 PE=4 SV=...	[more]
M0T1Y7_MUSAM	1.1e-24	75.00	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A068V829_COFCA	1.5e-24	73.68	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017091001 PE=4 SV=1	[more]
A0A0D6QXB0_ARACU	1.9e-24	73.68	Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1	[more]
A0A022RT39_ERYGU	3.2e-24	75.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a023787mg PE=4 SV=1	[more]

BLAST of CU124034 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129372\|ref\|XP_008464652.1\|	1.3e-29	85.53	PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo]	[more]
gi\|449463605\|ref\|XP_004149522.1\|	6.3e-29	84.21	PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sati...	[more]
gi\|359485331\|ref\|XP_002278295.2\|	3.8e-26	76.32	PREDICTED: N-acetyl-D-glucosamine kinase [Vitis vinifera]	[more]
gi\|747076711\|ref\|XP_011085437.1\|	6.5e-26	76.32	PREDICTED: N-acetyl-D-glucosamine kinase-like isoform X1 [Sesamum indicum]	[more]
gi\|743875408\|ref\|XP_010907330.1\|	4.2e-25	72.37	PREDICTED: N-acetyl-D-glucosamine kinase-like [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002731	ATPase_BadF

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G616780	Csa4G616780	gene
Csa4G616770	Csa4G616770	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KSFS5	FKNP3UI02KSFS5	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002731	ATPase, BadF/BadG/BcrA/BcrD type	PFAM	PF01869	BcrAD_BadFG	coord: 7..52 score: 3.
None	No IPR available	PANTHER	PTHR12862	BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN	coord: 4..77 score: 7.8
None	No IPR available	PANTHER	PTHR12862:SF6	ACTIN-LIKE ATPASE SUPERFAMILY PROTEIN	coord: 4..77 score: 7.8
None	No IPR available	unknown	SSF53067	Actin-like ATPase domain	coord: 2..76 score: 3.01