CU124001 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU124001
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 9105436 .. 9105678 (-)
Sequence length248
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GGGCGGAAGAGGGGTTGGAGGCGGCAATGGAGGAAGCAATCTGAGAGAGAGAGATGGGAGAGCCATGGGAGTTGATGATATCGGCTAAGTGAAGTTCGACGGCACATTTTAAAGCCATGGAATCGGCAAAACAGAGCATGTACTTCCATATCTCTGCCTGCCCTTGTAGCAGTGCCTCTGCTTCTTTAGCTTCTTTGGCTTCCATTTCTAATTTCTTTTGGGTTGAAGTTGTTTTGTTTTGCCCCCGG
Library
Library categoryESTs
fruit (8DPP) library1
Homology
[Close]
BLAST of CU124001 vs. Swiss-Prot
Match: 7OMT_PAPSO ((R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum GN=7OMT PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 8.1e-06
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = -2 

Query: 62  IWKYMLCFADSMALKCAVELHLADIINSHG 121
           IW++M  F DSMALKCAVEL + DIINSHG
Sbjct: 14  IWEHMFAFVDSMALKCAVELGIPDIINSHG 43

Query: 122  152
           
Sbjct: 74   43

[Close]
BLAST of CU124001 vs. TrEMBL
Match: A0A0A0KAJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128650 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.3e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -2 

Query: 62  IWKYMLCFADSMALKCAVELHLADIINSHG 121
           IWKYMLCFADSMALKCAVELHLADIINSHG
Sbjct: 19  IWKYMLCFADSMALKCAVELHLADIINSHG 48

Query: 122  152
           
Sbjct: 79   48

[Close]
BLAST of CU124001 vs. NCBI nr
Match: gi|659094854|ref|XP_008448276.1| (PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -2 

Query: 62  IWKYMLCFADSMALKCAVELHLADIINSHG 121
           IWKYMLCFADSMALKCAVELHLADIINSHG
Sbjct: 54  IWKYMLCFADSMALKCAVELHLADIINSHG 83

Query: 122  152
           
Sbjct: 114  83

[Close]
BLAST of CU124001 vs. NCBI nr
Match: gi|449444344|ref|XP_004139935.1| (PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -2 

Query: 62  IWKYMLCFADSMALKCAVELHLADIINSHG 121
           IWKYMLCFADSMALKCAVELHLADIINSHG
Sbjct: 19  IWKYMLCFADSMALKCAVELHLADIINSHG 48

Query: 122  152
           
Sbjct: 79   48

The following BLAST results are available for this feature:
BLAST of CU124001 vs. Swiss-Prot
Match NameE-valueIdentityDescription
7OMT_PAPSO8.1e-0673.33(R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum GN=7OMT PE=1 SV=1[more]
BLAST of CU124001 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAJ3_CUCSA9.3e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G128650 PE=3 SV=1[more]
BLAST of CU124001 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094854|ref|XP_008448276.1|1.3e-08100.00PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Cucumis melo][more]
gi|449444344|ref|XP_004139935.1|1.3e-08100.00PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR011991Winged helix-turn-helix DNA-binding domain
IPR012967Plant_MeTrfase_dimerisation
IPR016461O-MeTrfase_COMT
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0046983 protein dimerization activity
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G128650Csa6G128650gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KRUR9FKNP3UI02KRUR9EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 2..65
score: 4.4
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 10..66
score: 1.9
IPR012967Plant methyltransferase dimerisationPFAMPF08100Dimerisationcoord: 30..68
score: 9.2
IPR016461O-methyltransferase COMT-typePROFILEPS51683SAM_OMT_IIcoord: 20..69
score: 12
NoneNo IPR availablePANTHERPTHR11746O-METHYLTRANSFERASEcoord: 1..65
score: 2.2
NoneNo IPR availablePANTHERPTHR11746:SF111O-METHYLTRANSFERASE FAMILY PROTEINcoord: 1..65
score: 2.2