CU123804 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU123804
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	F-box protein interaction domain protein
Location	Chr1 : 11300269 .. 11300527 (-)
Sequence length	258

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTGAAGACATCGCCCTCTGGAATCCGTCCACGAGGAAGCACCGTATATTGCCATCTCTGCCTCCGGAGCGTCGCCGTGATGGTGTTCTTCGTATCTTCAATGAGTCTTACGGTTTCGGGTTTGATTCTGTCCACGATGACTTTAAACTCTTGAAAATTTCGCAATTTATAGGATTGGATGACCCTATGGATTTTGATTCGCATGTTAAGGTTTTTAGTTTGAGAAAATTTTGTTGGATGCCGATTGAAAGTACGAGTT

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU123804 vs. Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-06
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 3


Query: 6   DIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDDP 65
           D+A++NPSTRK   LP  P +     + R +   YG G+DSV DDFK+++I Q    +  
Sbjct: 107 DLAIFNPSTRKIHRLPIEPIDFPERDITREY-VFYGLGYDSVGDDFKVVRIVQCKLKEGK 166

Query: 66  MDFDS--HVKVFSLRKFCW 125
             F     VKVFSL+K  W
Sbjct: 167 KKFPCPVEVKVFSLKKNSW 184

Query: 126  185
           
Sbjct: 227  184

Query: 186  237
           
Sbjct: 287  184

[Close]

BLAST of CU123804 vs. TrEMBL
Match: A0A0A0LW75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G186670 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.6e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD 62
           EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD
Sbjct: 112 EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD 171

Query: 63  PMDFDSHVKVFSLRKFCWMPIESTS 122
           PMDFDSHVKVFSLRKFCWMPIESTS
Sbjct: 172 PMDFDSHVKVFSLRKFCWMPIESTS 196

Query: 123  182
           
Sbjct: 232  196

Query: 183  242
           
Sbjct: 292  196

Query: 243  258
           
Sbjct: 352  196

[Close]

BLAST of CU123804 vs. TrEMBL
Match: M5WIQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006542mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-18
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRD-GVLRIFNESYGFGFDSVHDDFKLLKISQFIGLD 62
           EDIALWNPST+K+R+LPSLP +R+RD G+       YG G+D+ HDD+KL++ISQFIGL 
Sbjct: 124 EDIALWNPSTKKYRVLPSLPSDRKRDSGMCLCGARVYGLGYDAGHDDYKLVRISQFIGL- 183

Query: 63  DPMDFDSHVKVFSLRKFCWMPIE 122
           D + F+S VKV+SLR   W  +E
Sbjct: 184 DYLSFESEVKVYSLRNNAWKKVE 205

Query: 123  182
           
Sbjct: 244  205

Query: 183  242
           
Sbjct: 304  205

Query: 243  249
           
Sbjct: 364  205

[Close]

BLAST of CU123804 vs. TrEMBL
Match: W9R8T6_9ROSA (F-box protein OS=Morus notabilis GN=L484_013668 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-15
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRDGVLRI---FNESYGFGFDSVHDDFKLLKISQFIG 62
           EDIA WNPST+ HR+LP LP +R RD  LR+   F   +GFG+D+V++D+KL++ISQFIG
Sbjct: 112 EDIAFWNPSTKTHRLLPFLPLDRTRD--LRMSSRFYRVFGFGYDAVNEDYKLVRISQFIG 171

Query: 63  LDDPMDFDSHVKVFSLRKFCWMPIE 122
           L D   F+S VK++SLR   W  +E
Sbjct: 172 L-DYRSFESEVKIYSLRTNEWKSME 193

Query: 123  182
           
Sbjct: 232  193

Query: 183  242
           
Sbjct: 292  193

Query: 243  249
           
Sbjct: 352  193

[Close]

BLAST of CU123804 vs. TrEMBL
Match: B9HCS6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01360g PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.4e-13
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPE-RRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLD 62
           +DIA+WNPSTRKHR++P LP E +R  G        +GFG+DSV DD+KL++I+QF G  
Sbjct: 113 DDIAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQF-GGG 172

Query: 63  DPMDFDSHVKVFSLRKFCWMPI 122
               F+S VKV+SLRK  W  I
Sbjct: 173 GKRSFESEVKVYSLRKQSWRRI 193

Query: 123  182
           
Sbjct: 233  193

Query: 183  242
           
Sbjct: 293  193

Query: 243  246
           
Sbjct: 353  193

[Close]

BLAST of CU123804 vs. TrEMBL
Match: I1L001_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G010600 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-12
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRR--DGVLRIFNESYGFGFDSVHDDFKLLKISQFIGL 62
           +DIA WNPS R+HRILPSLP  RRR            YGFGFD    D+KL++IS F+ L
Sbjct: 108 DDIAFWNPSLRQHRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDL 167

Query: 63  DDPMDFDSHVKVFSLRKFCWMPIES 122
            D   FDS VK+++LR   W  + S
Sbjct: 168 QD-RSFDSQVKLYTLRANAWKTLPS 191

Query: 123  182
           
Sbjct: 228  191

Query: 183  242
           
Sbjct: 288  191

Query: 243  252
           
Sbjct: 348  191

[Close]

BLAST of CU123804 vs. NCBI nr
Match: gi|778659805|ref|XP_011655060.1| (PREDICTED: F-box protein CPR30 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-44
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD 62
           EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD
Sbjct: 112 EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD 171

Query: 63  PMDFDSHVKVFSLRKFCWMPIESTS 122
           PMDFDSHVKVFSLRKFCWMPIESTS
Sbjct: 172 PMDFDSHVKVFSLRKFCWMPIESTS 196

Query: 123  182
           
Sbjct: 232  196

Query: 183  242
           
Sbjct: 292  196

Query: 243  258
           
Sbjct: 352  196

[Close]

BLAST of CU123804 vs. NCBI nr
Match: gi|659118118|ref|XP_008458955.1| (PREDICTED: F-box protein CPR30-like [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-39
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRDGVLRIFNESYGFGFDSVHDDFKLLKISQFIGLDD 62
           EDIALWNPSTRKHRILPSLPP+RRRDGVLR   ESYGFGFDSVHDDFKLLKISQFIGL+D
Sbjct: 159 EDIALWNPSTRKHRILPSLPPDRRRDGVLRFSIESYGFGFDSVHDDFKLLKISQFIGLED 218

Query: 63  PMDFDSHVKVFSLRKFCWMPIES 122
           PMDFDSHVKVFS+RKFCWMPIES
Sbjct: 219 PMDFDSHVKVFSMRKFCWMPIES 241

Query: 123  182
           
Sbjct: 279  241

Query: 183  242
           
Sbjct: 339  241

Query: 243  252
           
Sbjct: 399  241

[Close]

BLAST of CU123804 vs. NCBI nr
Match: gi|645242270|ref|XP_008227473.1| (PREDICTED: F-box protein CPR30-like [Prunus mume])

HSP 1 Score: 101.7 bits (252), Expect = 6.6e-19
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRD-GVLRIFNESYGFGFDSVHDDFKLLKISQFIGLD 62
           EDIALWNPST+K+R+LPSLP +R+RD G+       YG G+D+ HDD+KL++ISQFIGL 
Sbjct: 124 EDIALWNPSTKKYRVLPSLPSDRKRDSGMCLCGARVYGLGYDAGHDDYKLVRISQFIGL- 183

Query: 63  DPMDFDSHVKVFSLRKFCWMPIE 122
           D + F+S VKV+SLR   W  +E
Sbjct: 184 DYLSFESEVKVYSLRNNAWKKVE 205

Query: 123  182
           
Sbjct: 244  205

Query: 183  242
           
Sbjct: 304  205

Query: 243  249
           
Sbjct: 364  205

[Close]

BLAST of CU123804 vs. NCBI nr
Match: gi|595865495|ref|XP_007211962.1| (hypothetical protein PRUPE_ppa006542mg [Prunus persica])

HSP 1 Score: 101.7 bits (252), Expect = 6.6e-19
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRD-GVLRIFNESYGFGFDSVHDDFKLLKISQFIGLD 62
           EDIALWNPST+K+R+LPSLP +R+RD G+       YG G+D+ HDD+KL++ISQFIGL 
Sbjct: 124 EDIALWNPSTKKYRVLPSLPSDRKRDSGMCLCGARVYGLGYDAGHDDYKLVRISQFIGL- 183

Query: 63  DPMDFDSHVKVFSLRKFCWMPIE 122
           D + F+S VKV+SLR   W  +E
Sbjct: 184 DYLSFESEVKVYSLRNNAWKKVE 205

Query: 123  182
           
Sbjct: 244  205

Query: 183  242
           
Sbjct: 304  205

Query: 243  249
           
Sbjct: 364  205

[Close]

BLAST of CU123804 vs. NCBI nr
Match: gi|657958909|ref|XP_008370996.1| (PREDICTED: F-box protein CPR30-like [Malus domestica])

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 3


Query: 3   EDIALWNPSTRKHRILPSLPPERRRDGVLRIFN-ESYGFGFDSVHDDFKLLKISQFIGLD 62
           EDIA WNPST+K+RILPSLP +R+RD  + +     YG G+D+VHDD+KL++ISQFIGL 
Sbjct: 127 EDIAFWNPSTKKYRILPSLPSDRKRDSNMCLCGARVYGLGYDAVHDDYKLVRISQFIGL- 186

Query: 63  DPMDFDSHVKVFSLRKFCWMPIE 122
           D + F S V+VFSLR   W  +E
Sbjct: 187 DYLSFVSEVRVFSLRNNAWKRLE 208

Query: 123  182
           
Sbjct: 247  208

Query: 183  242
           
Sbjct: 307  208

Query: 243  249
           
Sbjct: 367  208

The following BLAST results are available for this feature:

BLAST of CU123804 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB244_ARATH	3.8e-06	41.77	F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3	[more]

BLAST of CU123804 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW75_CUCSA	4.6e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G186670 PE=4 SV=1	[more]
M5WIQ9_PRUPE	3.9e-18	57.83	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006542mg PE=4 SV=1	[more]
W9R8T6_9ROSA	6.9e-15	54.12	F-box protein OS=Morus notabilis GN=L484_013668 PE=4 SV=1	[more]
B9HCS6_POPTR	6.4e-13	52.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01360g PE=4 SV=1	[more]
I1L001_SOYBN	1.9e-12	49.41	Uncharacterized protein OS=Glycine max GN=GLYMA_09G010600 PE=4 SV=1	[more]

BLAST of CU123804 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659805\|ref\|XP_011655060.1\|	7.7e-44	100.00	PREDICTED: F-box protein CPR30 [Cucumis sativus]	[more]
gi\|659118118\|ref\|XP_008458955.1\|	2.6e-39	92.77	PREDICTED: F-box protein CPR30-like [Cucumis melo]	[more]
gi\|645242270\|ref\|XP_008227473.1\|	6.6e-19	57.83	PREDICTED: F-box protein CPR30-like [Prunus mume]	[more]
gi\|595865495\|ref\|XP_007211962.1\|	6.6e-19	57.83	hypothetical protein PRUPE_ppa006542mg [Prunus persica]	[more]
gi\|657958909\|ref\|XP_008370996.1\|	2.5e-18	57.83	PREDICTED: F-box protein CPR30-like [Malus domestica]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G186670	Csa1G186670	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KOHMM	FKNP3UI02KOHMM	EST