CU123241 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU123241
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U-box domain-containing protein 20
Location	Chr3 : 17417212 .. 17417449 (-)
Sequence length	238

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATTTGTGATTACAAACAAGGGGAGAGAGAAGCTTTACAATAATGCACTAACTATTCCACTCTTAGTCAAGAAGATCCTTAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGGAGGGCGAGAATGAGGTGA

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU123241 vs. Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-07
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 85  TNKGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSG 144
           T  GRE++  NAL +PLLVKKI +VSELAT  S+S++LKL K+G
Sbjct: 328 TEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTG 371

Query: 145  204
           
Sbjct: 388  371

Query: 205  217
           
Sbjct: 448  371

HSP 2 Score: 42.0 bits (97), Expect = 3.6e-03
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 3


Query: 12  LEFLVDAEKSLCEKALGILDGICDYKQGERE 71
           +E +VDAE S+CEKAL +LD IC+ + G  E
Sbjct: 304 VEMIVDAENSVCEKALAVLDAICETEHGREE 334

Query: 72   105
           
Sbjct: 364  334

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BLAST of CU123241 vs. TrEMBL
Match: A0A0A0LAV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308190 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 91  KGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 150
           +GREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGE+GENEV
Sbjct: 335 QGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEV 383

Query: 151  210
           
Sbjct: 395  383

Query: 211  238
           
Sbjct: 455  383

[Close]

BLAST of CU123241 vs. TrEMBL
Match: A0A0A0LAV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308190 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-08
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 3


Query: 3   SQLLEFLVDAEKSLCEKALGILDGICDYKQGERE 62
           SQLLEFLVDAEKSLCEKALGILDGICDYKQG  +
Sbjct: 306 SQLLEFLVDAEKSLCEKALGILDGICDYKQGREK 339

Query: 63   105
           
Sbjct: 366  339

HSP 2 Score: 66.6 bits (161), Expect = 1.5e-08
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 94  GREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 153
           GREK Y NALTIP+LVKKILRVSE+ATEYS+S + KLCK     E  V
Sbjct: 343 GREKAYANALTIPVLVKKILRVSEMATEYSISAIWKLCKCASSQEERV 390

Query: 154  213
           
Sbjct: 403  390

Query: 214  238
           
Sbjct: 463  390

[Close]

BLAST of CU123241 vs. TrEMBL
Match: M5WAJ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005659mg PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.5e-03
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 3


Query: 3   SQLLEFLVDAEKSLCEKALGILDGICDYKQGEREA 62
           S LLE LVD+E+ +CE+ALG+LD +CD++ G  +A
Sbjct: 313 SILLEILVDSERGICERALGVLDSLCDFQDGREKA 347

Query: 63   108
           
Sbjct: 373  347

HSP 2 Score: 65.1 bits (157), Expect = 4.4e-08
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1


Query: 82  ITNKGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 141
           +TN+GREK Y NALT+P+LVKKILRVS+LATE+S+SI+ KL K+ +  +  V
Sbjct: 334 LTNEGREKAYANALTMPVLVKKILRVSDLATEFSVSIVWKLSKNDKSEDGGV 385

Query: 142  201
           
Sbjct: 394  385

Query: 202  238
           
Sbjct: 454  385

[Close]

BLAST of CU123241 vs. TrEMBL
Match: Q93VZ1_PETCR (Immediate-early fungal elicitor protein CMPG1 OS=Petroselinum crispum GN=CMPG1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.4e-03
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 3


Query: 6   QLLEFLVDAEKSLCEKALGILDGICDYKQGEREA 65
           +LLE LVD +KS+CEKALG+LDG+C   +G  +A
Sbjct: 309 RLLEMLVDCDKSICEKALGVLDGLCLTNEGREKA 342

Query: 66   108
           
Sbjct: 369  342

HSP 2 Score: 65.1 bits (157), Expect = 4.4e-08
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 91  KGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEE 150
           KGRE+ Y NALT+P+LVKKILRVS+ ATE+S+SI+ KLCKS E+
Sbjct: 341 KGREEAYGNALTMPVLVKKILRVSDSATEFSVSIIWKLCKSRED 384

Query: 151  210
           
Sbjct: 401  384

Query: 211  223
           
Sbjct: 461  384

[Close]

BLAST of CU123241 vs. TrEMBL
Match: W9RRX1_9ROSA (U-box domain-containing protein 20 OS=Morus notabilis GN=L484_019305 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-03
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 3


Query: 9   LLEFLVDAEKSLCEKALGILDGICDYKQGEREA 68
           LLE +V +E+S+C+KALG+LDGIC  K+G  EA
Sbjct: 314 LLEMIVGSERSVCDKALGVLDGICSCKKGREEA 346

Query: 69   108
           
Sbjct: 374  346

HSP 2 Score: 65.1 bits (157), Expect = 4.4e-08
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 85  TNKGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 144
           +++GREK Y+++LTIP+LVKKI RVSELATE+S+SIL KLCK+ +  E  V
Sbjct: 318 SDQGREKAYDHSLTIPVLVKKIHRVSELATEFSVSILWKLCKNEKRKEGNV 368

Query: 145  204
           
Sbjct: 378  368

Query: 205  238
           
Sbjct: 438  368

[Close]

BLAST of CU123241 vs. NCBI nr
Match: gi|449456206|ref|XP_004145841.1| (PREDICTED: U-box domain-containing protein 21 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.9e-16
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 91  KGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 150
           +GREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGE+GENEV
Sbjct: 335 QGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEV 383

Query: 151  210
           
Sbjct: 395  383

Query: 211  238
           
Sbjct: 455  383

[Close]

BLAST of CU123241 vs. NCBI nr
Match: gi|659114404|ref|XP_008457035.1| (PREDICTED: U-box domain-containing protein 21-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 91  KGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 150
           +GREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGE+GE+EV
Sbjct: 335 QGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGEDEV 383

Query: 151  210
           
Sbjct: 395  383

Query: 211  238
           
Sbjct: 455  383

[Close]

BLAST of CU123241 vs. NCBI nr
Match: gi|1009166093|ref|XP_015901401.1| (PREDICTED: U-box domain-containing protein 21-like [Ziziphus jujuba])

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-09
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 85  TNKGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCK--SGEEG 144
           T KGREK YN+ALT+P+LVKKILRVS+LATE+S+SIL KLCK  + EEG
Sbjct: 341 TEKGREKAYNHALTMPVLVKKILRVSDLATEFSVSILWKLCKYETREEG 389

Query: 145  204
           
Sbjct: 401  389

Query: 205  226
           
Sbjct: 461  389

[Close]

BLAST of CU123241 vs. NCBI nr
Match: gi|645270334|ref|XP_008240411.1| (PREDICTED: U-box domain-containing protein 21-like [Prunus mume])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 94  GREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 153
           GREK Y NALTIP+LVKKILRVSE+ATEYS+S + KLCK     E  V
Sbjct: 344 GREKAYANALTIPVLVKKILRVSEMATEYSISAIWKLCKCASSQEERV 391

Query: 154  213
           
Sbjct: 404  391

Query: 214  238
           
Sbjct: 464  391

[Close]

BLAST of CU123241 vs. NCBI nr
Match: gi|595846434|ref|XP_007209132.1| (hypothetical protein PRUPE_ppa005659mg [Prunus persica])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-08
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 94  GREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEEGENEV 153
           GREK Y NALTIP+LVKKILRVSE+ATEYS+S + KLCK     E  V
Sbjct: 343 GREKAYANALTIPVLVKKILRVSEMATEYSISAIWKLCKCASSQEERV 390

Query: 154  213
           
Sbjct: 403  390

Query: 214  238
           
Sbjct: 463  390

The following BLAST results are available for this feature:

BLAST of CU123241 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PUB21_ARATH	7.0e-07	61.36	U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1	[more]

BLAST of CU123241 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAV4_CUCSA	1.2e-16	95.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308190 PE=4 SV=1	[more]
A0A0A0LAV4_CUCSA	2.0e-08	91.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308190 PE=4 SV=1	[more]
M5WAJ2_PRUPE	5.5e-03	54.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005659mg PE=4 SV=1	[more]
Q93VZ1_PETCR	9.4e-03	58.82	Immediate-early fungal elicitor protein CMPG1 OS=Petroselinum crispum GN=CMPG1 P...	[more]
W9RRX1_9ROSA	7.2e-03	60.61	U-box domain-containing protein 20 OS=Morus notabilis GN=L484_019305 PE=4 SV=1	[more]

BLAST of CU123241 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456206\|ref\|XP_004145841.1\|	4.9e-16	95.92	PREDICTED: U-box domain-containing protein 21 [Cucumis sativus]	[more]
gi\|659114404\|ref\|XP_008457035.1\|	1.8e-15	93.88	PREDICTED: U-box domain-containing protein 21-like [Cucumis melo]	[more]
gi\|1009166093\|ref\|XP_015901401.1\|	7.5e-09	73.47	PREDICTED: U-box domain-containing protein 21-like [Ziziphus jujuba]	[more]
gi\|645270334\|ref\|XP_008240411.1\|	4.9e-08	68.75	PREDICTED: U-box domain-containing protein 21-like [Prunus mume]	[more]
gi\|595846434\|ref\|XP_007209132.1\|	4.9e-08	68.75	hypothetical protein PRUPE_ppa005659mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G308190	Csa3G308190	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KF2J9	FKNP3UI02KF2J9	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22849	WDSAM1 PROTEIN	coord: 2..76 score: 6.9
None	No IPR available	PANTHER	PTHR22849:SF9	SUBFAMILY NOT NAMED	coord: 2..76 score: 6.9