CU122858 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU122858
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat protein
Location	Chr2 : 4573171 .. 4573388 (-)
Sequence length	217

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTCGGAGATGACAACTCGAGGGATTTGTCCTTGTATATTCACGTACAACACTTTTGTCTCGGGGTATGCAGGACGCGGAATGTTTGCAGAGGTAGATGAAGTCGTAAGCTACATGATTCAGAAAAATTGCAAACCCAATGAACTTACTTACAAGATCATAGTGGATGGTTATTGTAAAGCAAGAAAATATCAAGATGCTATGGATTTCATCTTTGGG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU122858 vs. Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-23
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMT RGI PCIFTYNTFVSGY   GMFAE+++V+  M + +C+PNELT+K++VDGYC+A
Sbjct: 725 SEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRA 784

Query: 62  RKYQDAMDFI 121
            KY +AMDF+
Sbjct: 785 GKYSEAMDFV 794

Query: 122  181
           
Sbjct: 845  794

Query: 182  212
           
Sbjct: 905  794

HSP 2 Score: 45.1 bits (105), Expect = 3.9e-04
Identity = 21/62 (33.87%), Postives = 31/62 (50.00%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EMT  G   C+ TYN  ++  A +G +   + V+S M  K  KP E +Y +++  Y K  
Sbjct: 516 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575

Query: 65  KY 124
            Y
Sbjct: 576 NY 577

Query: 125  184
           
Sbjct: 636  577

Query: 185  191
           
Sbjct: 696  577

[Close]

BLAST of CU122858 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEM   GI P + TYNTF+  YA   MF E   VV YMI+  C+PN+ TY  IVDGYCK 
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782

Query: 62  RKYQDAMDFI 121
            +  +A  F+
Sbjct: 783 NRKDEAKLFV 792

Query: 122  181
           
Sbjct: 843  792

Query: 182  212
           
Sbjct: 903  792

HSP 2 Score: 47.0 bits (110), Expect = 1.0e-04
Identity = 21/60 (35.00%), Postives = 33/60 (55.00%), Query Frame = 2


Query: 8   MTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKARK 67
           M   G+ P + TYNT ++  A  GM+ + ++V++ M    CKPNELTY  ++  Y   ++
Sbjct: 515 MLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKE 574

Query: 68   127
           
Sbjct: 575  574

Query: 128  187
           
Sbjct: 635  574

HSP 3 Score: 41.2 bits (95), Expect = 5.6e-03
Identity = 19/67 (28.36%), Postives = 28/67 (41.79%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           ++M  +G  P +FTY T +SG+   G       +   M    CKPN  T+   +  Y   
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNR 432

Query: 62  RKYQDAM 121
            K+ + M
Sbjct: 433 GKFTEMM 439

Query: 122  181
           
Sbjct: 493  439

Query: 182  203
           
Sbjct: 553  439

[Close]

BLAST of CU122858 vs. Swiss-Prot
Match: PPR39_ARATH (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-09
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EM  RGI P   TYN+ + G+       E  ++V  MI K C P+ +T+ I+++GYCKA 
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417

Query: 65  KYQDAMD 124
           +  D ++
Sbjct: 418 RIDDGLE 424

Query: 125  184
           
Sbjct: 478  424

Query: 185  206
           
Sbjct: 538  424

HSP 2 Score: 53.9 bits (128), Expect = 8.4e-07
Identity = 19/69 (27.54%), Postives = 37/69 (53.62%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           +M  R I P + T++  +  +   G   E D+++  M+Q+   PN +TY  ++DG+CK  
Sbjct: 323 DMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKEN 382

Query: 65  KYQDAMDFI 124
           + ++A+  +
Sbjct: 383 RLEEAIQMV 391

Query: 125  184
           
Sbjct: 443  391

Query: 185  212
           
Sbjct: 503  391

HSP 3 Score: 48.9 bits (115), Expect = 2.7e-05
Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EM+ RG+     TYNT V G+   G      ++   M+ +  +P+ ++YKI++DG C   
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNG 487

Query: 65  KYQDAMDFIFG 124
           + + A++ IFG
Sbjct: 488 ELEKALE-IFG 497

Query: 125  184
           
Sbjct: 548  497

Query: 185  218
           
Sbjct: 608  497

HSP 4 Score: 39.7 bits (91), Expect = 1.6e-02
Identity = 19/68 (27.94%), Postives = 34/68 (50.00%), Query Frame = 2


Query: 8   MTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKARK 67
           M   G  P + T NT V+G    G  ++   ++  M++   +PNE+TY  +++  CK+ +
Sbjct: 184 MVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQ 243

Query: 68  YQDAMDFI 127
              AM+ +
Sbjct: 244 TALAMELL 251

Query: 128  187
           
Sbjct: 304  251

Query: 188  212
           
Sbjct: 364  251

HSP 5 Score: 33.5 bits (75), Expect = 1.2e+00
Identity = 19/64 (29.69%), Postives = 28/64 (43.75%), Query Frame = 2


Query: 20  GICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKARKYQDA 79
           G  P    +NT ++G       +E  E+V  M++   KP  +T   +V+G C   K  DA
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 80  MDFI 139
           +  I
Sbjct: 213 VVLI 216

Query: 140  199
           
Sbjct: 273  216

Query: 200  212
           
Sbjct: 333  216

[Close]

BLAST of CU122858 vs. Swiss-Prot
Match: PPR98_ARATH (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-08
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EM  R I P I TYN+ ++G+       E  ++ + M+ K+C P+ +TY  +++G+CKA+
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAK 394

Query: 65  KYQDAMD 124
           K  D M+
Sbjct: 395 KVVDGME 401

Query: 125  184
           
Sbjct: 455  401

Query: 185  206
           
Sbjct: 515  401

HSP 2 Score: 49.3 bits (116), Expect = 2.1e-05
Identity = 23/67 (34.33%), Postives = 33/67 (49.25%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           +M + G+ P I TYNT + G    G   +   V  Y+ +   +P+  TY I+ +G CKA 
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499

Query: 65  KYQDAMD 124
           K +D  D
Sbjct: 500 KVEDGWD 506

Query: 125  184
           
Sbjct: 560  506

Query: 185  206
           
Sbjct: 620  506

HSP 3 Score: 48.5 bits (114), Expect = 3.5e-05
Identity = 20/66 (30.30%), Postives = 36/66 (54.55%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           S+M  R I P + T+N+ +  +A  G   E +++   MIQ++  PN +TY  +++G+C  
Sbjct: 299 SDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 358

Query: 62  RKYQDA 121
            +  +A
Sbjct: 359 DRLDEA 364

Query: 122  181
           
Sbjct: 419  364

Query: 182  200
           
Sbjct: 479  364

HSP 4 Score: 40.8 bits (94), Expect = 7.3e-03
Identity = 20/66 (30.30%), Postives = 28/66 (42.42%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           +M+ RG+     TY T + G+           V   M+     PN +TY  ++DG CK  
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query: 65  KYQDAM 124
           K + AM
Sbjct: 465 KLEKAM 470

Query: 125  184
           
Sbjct: 525  470

Query: 185  203
           
Sbjct: 585  470

HSP 5 Score: 39.3 bits (90), Expect = 2.1e-02
Identity = 18/58 (31.03%), Postives = 27/58 (46.55%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCK 64
           +M   G  P   T+ T V G       +E   +V  M+ K C+P+ +TY  +++G CK
Sbjct: 160 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCK 217

Query: 65   124
           
Sbjct: 220  217

Query: 125  179
           
Sbjct: 280  217

[Close]

BLAST of CU122858 vs. Swiss-Prot
Match: PPR95_ARATH (Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-08
Identity = 24/67 (35.82%), Postives = 40/67 (59.70%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EM  R I P IFTY++ ++G+       E  +++  MI+K+C PN +TY  +++G+CKA+
Sbjct: 348 EMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAK 407

Query: 65  KYQDAMD 124
           +    M+
Sbjct: 408 RVDKGME 414

Query: 125  184
           
Sbjct: 468  414

Query: 185  206
           
Sbjct: 528  414

HSP 2 Score: 42.4 bits (98), Expect = 2.5e-03
Identity = 23/66 (34.85%), Postives = 28/66 (42.42%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EM+ RG+     TY T + G+           V   M+     PN LTY I++DG CK  
Sbjct: 418 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 477

Query: 65  KYQDAM 124
           K   AM
Sbjct: 478 KLAKAM 483

Query: 125  184
           
Sbjct: 538  483

Query: 185  203
           
Sbjct: 598  483

HSP 3 Score: 39.7 bits (91), Expect = 1.6e-02
Identity = 17/58 (29.31%), Postives = 28/58 (48.28%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCK 64
           +M   G  P   T+ T + G       +E   ++  M+Q+ C+P+ +TY  +V+G CK
Sbjct: 173 QMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCK 230

Query: 65   124
           
Sbjct: 233  230

Query: 125  179
           
Sbjct: 293  230

[Close]

BLAST of CU122858 vs. TrEMBL
Match: A0A0A0LMF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059820 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-35
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEV+SYMIQKNCKPNELTYKIIVDGYCKA
Sbjct: 747 SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKA 806

Query: 62  RKYQDAMDFIFG 121
           RKYQDAMDFIFG
Sbjct: 807 RKYQDAMDFIFG 818

Query: 122  181
           
Sbjct: 867  818

Query: 182  218
           
Sbjct: 927  818

[Close]

BLAST of CU122858 vs. TrEMBL
Match: A0A061GPT0_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TCM_039151 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-27
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTTRGI PCIFTYNTFV+GYA +GMF E+D+V+ YMIQ NCKPNELTYKI+VDGYCKA
Sbjct: 748 SEMTTRGIRPCIFTYNTFVAGYASQGMFTEIDDVIGYMIQHNCKPNELTYKIVVDGYCKA 807

Query: 62  RKYQDAMDFI 121
           R+Y++AMDF+
Sbjct: 808 RRYKEAMDFV 817

Query: 122  181
           
Sbjct: 868  817

Query: 182  212
           
Sbjct: 928  817

[Close]

BLAST of CU122858 vs. TrEMBL
Match: A0A024CJT3_GOSHI (Pentatricopeptide repeat protein OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-27
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTT+GI PCIFTYNTFV+GYA +GMF E+D+V+S+MIQ NCKPNELTYKI+VDGYCKA
Sbjct: 754 SEMTTKGIRPCIFTYNTFVAGYAAQGMFTEIDDVISHMIQHNCKPNELTYKIVVDGYCKA 813

Query: 62  RKYQDAMDFI 121
           R+Y+DAMDF+
Sbjct: 814 RRYKDAMDFV 823

Query: 122  181
           
Sbjct: 874  823

Query: 182  212
           
Sbjct: 934  823

[Close]

BLAST of CU122858 vs. TrEMBL
Match: M5WR28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001374mg PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.1e-27
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMT RGI PCIFTYNTF++GYAG+GMF+E+DEV+SYM Q NCKPNEL+YKI VDGYCKA
Sbjct: 745 SEMTARGIRPCIFTYNTFITGYAGQGMFSEIDEVISYMTQNNCKPNELSYKIAVDGYCKA 804

Query: 62  RKYQDAMDFI 121
           RKY++AMDF+
Sbjct: 805 RKYKEAMDFL 814

Query: 122  181
           
Sbjct: 865  814

Query: 182  212
           
Sbjct: 925  814

[Close]

BLAST of CU122858 vs. TrEMBL
Match: M5WR28_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001374mg PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 2.4e+00
Identity = 17/58 (29.31%), Postives = 29/58 (50.00%), Query Frame = 2


Query: 8   MTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 67
           + ++G  P   TYN  +  +   G+F E   ++  M   NC P+ +TY  +V  Y +A
Sbjct: 327 LKSQGYVPGTVTYNALLQVFGKAGVFTEALSILKEMEDNNCPPDAVTYNELVAAYVRA 384

Query: 68   127
           
Sbjct: 387  384

Query: 128  182
           
Sbjct: 447  384

HSP 2 Score: 127.1 bits (318), Expect = 8.7e-27
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 2


Query: 5   EMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKAR 64
           EMT RGI PCIFTYNTFVSGYAG+GMF E+DEV+ +M Q NCKPNELTYKI+VDGYCKAR
Sbjct: 727 EMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKAR 786

Query: 65  KYQDAMDFI 124
           KY++AMDF+
Sbjct: 787 KYKEAMDFL 795

Query: 125  184
           
Sbjct: 847  795

Query: 185  212
           
Sbjct: 907  795

[Close]

BLAST of CU122858 vs. NCBI nr
Match: gi|449461223|ref|XP_004148341.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-35
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEV+SYMIQKNCKPNELTYKIIVDGYCKA
Sbjct: 747 SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKA 806

Query: 62  RKYQDAMDFIFG 121
           RKYQDAMDFIFG
Sbjct: 807 RKYQDAMDFIFG 818

Query: 122  181
           
Sbjct: 867  818

Query: 182  218
           
Sbjct: 927  818

[Close]

BLAST of CU122858 vs. NCBI nr
Match: gi|659069744|ref|XP_008451598.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTTRGI PCIFTYNTFVSGYAGR MFAEVDEV+SYMIQ NCKPNELTYKIIVDGYCKA
Sbjct: 746 SEMTTRGIRPCIFTYNTFVSGYAGRRMFAEVDEVISYMIQNNCKPNELTYKIIVDGYCKA 805

Query: 62  RKYQDAMDFIFG 121
           RKYQDAMDF+FG
Sbjct: 806 RKYQDAMDFVFG 817

Query: 122  181
           
Sbjct: 866  817

Query: 182  218
           
Sbjct: 926  817

[Close]

BLAST of CU122858 vs. NCBI nr
Match: gi|470120746|ref|XP_004296451.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-29
Identity = 58/70 (82.86%), Postives = 67/70 (95.71%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTTRGI PCIFTYNTFV+GY+GRGMF+EVDEV+SYM Q NCKPNELTYKI+VDGYCKA
Sbjct: 740 SEMTTRGIRPCIFTYNTFVTGYSGRGMFSEVDEVISYMTQNNCKPNELTYKIVVDGYCKA 799

Query: 62  RKYQDAMDFI 121
           RK+++AMDF+
Sbjct: 800 RKFEEAMDFL 809

Query: 122  181
           
Sbjct: 860  809

Query: 182  212
           
Sbjct: 920  809

[Close]

BLAST of CU122858 vs. NCBI nr
Match: gi|632795274|gb|AHZ34329.1| (pentatricopeptide repeat protein [Gossypium hirsutum])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTT+GI PCIFTYNTFV+GYA +GMF E+D+V+S+MIQ NCKPNELTYKI+VDGYCKA
Sbjct: 754 SEMTTKGIRPCIFTYNTFVAGYAAQGMFTEIDDVISHMIQHNCKPNELTYKIVVDGYCKA 813

Query: 62  RKYQDAMDFI 121
           R+Y+DAMDF+
Sbjct: 814 RRYKDAMDFV 823

Query: 122  181
           
Sbjct: 874  823

Query: 182  212
           
Sbjct: 934  823

[Close]

BLAST of CU122858 vs. NCBI nr
Match: gi|590581015|ref|XP_007014231.1| (Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 2


Query: 2   SEMTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVVSYMIQKNCKPNELTYKIIVDGYCKA 61
           SEMTTRGI PCIFTYNTFV+GYA +GMF E+D+V+ YMIQ NCKPNELTYKI+VDGYCKA
Sbjct: 748 SEMTTRGIRPCIFTYNTFVAGYASQGMFTEIDDVIGYMIQHNCKPNELTYKIVVDGYCKA 807

Query: 62  RKYQDAMDFI 121
           R+Y++AMDF+
Sbjct: 808 RRYKEAMDFV 817

Query: 122  181
           
Sbjct: 868  817

Query: 182  212
           
Sbjct: 928  817

The following BLAST results are available for this feature:

BLAST of CU122858 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP163_ARATH	1.3e-23	65.71	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop...	[more]
PP362_ARATH	2.1e-13	50.00	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN...	[more]
PPR39_ARATH	2.4e-09	37.31	Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop...	[more]
PPR98_ARATH	1.2e-08	35.82	Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidop...	[more]
PPR95_ARATH	1.5e-08	35.82	Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidop...	[more]

BLAST of CU122858 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMF0_CUCSA	3.9e-35	98.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G059820 PE=4 SV=1	[more]
A0A061GPT0_THECC	3.0e-27	78.57	Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TC...	[more]
A0A024CJT3_GOSHI	3.0e-27	78.57	Pentatricopeptide repeat protein OS=Gossypium hirsutum PE=4 SV=1	[more]
M5WR28_PRUPE	5.1e-27	78.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001374mg PE=4 SV=1	[more]
M5WR28_PRUPE	2.4e+00	29.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001374mg PE=4 SV=1	[more]

BLAST of CU122858 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461223\|ref\|XP_004148341.1\|	1.5e-35	98.61	PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic ...	[more]
gi\|659069744\|ref\|XP_008451598.1\|	1.5e-32	93.06	PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic ...	[more]
gi\|470120746\|ref\|XP_004296451.1\|	6.0e-29	82.86	PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic ...	[more]
gi\|632795274\|gb\|AHZ34329.1\|	1.1e-27	78.57	pentatricopeptide repeat protein [Gossypium hirsutum]	[more]
gi\|590581015\|ref\|XP_007014231.1\|	1.1e-27	78.57	Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G059820	Csa2G059820	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K3UAC	FKNP3UI02K3UAC	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 11..60 score: 3.7
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 50..70 score: 3.0E-4coord: 14..48 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 47..73 score: 8.21coord: 12..46 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..71 score: 2.4
None	No IPR available	PANTHER	PTHR24015:SF343	SUBFAMILY NOT NAMED	coord: 2..71 score: 2.4