CU122019 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU122019
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cinnamoyl-CoA reductase, putative
Location	Chr2 : 23061851 .. 23062636 (-)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGTTAATATGGTGTCCATAAATGGAGGGCTAGTGATGGGACACGATGTGACAATGAATAACCCGTATTTGAAAGGAGCGGCTGAGATGTACGAAGATGGGGTGTTGGTCACCGTTGATCTTAAATTCATAGTTGATGCTCATATATGTGTGTTTTGAAGATGTGTCATCCTACGGTCGATATTTGTGCTTTAACAATATCATTAATTCTCATAAGGAAGCTCTTAGATTAGCCCATATGCTATTGCCGCCCTCTTCTGAAGCTTTCTCCCATTCCCCACCAAGTTTGGAAGACTCTGTTGTATATCAGCAAGGAATAAGCAACAAGAAACTTAACAAATTGATGGTGGATTTTGAAAGTGGAGATTCATGTTGACCAACAAAAAAACCATCCCAGACAAAATCAATTAGATTCCCCTAATTTTTTATTTTTTTTTATTTGTGCTATTATTAGGTCCTATTTTCGTTACCCCATT

Library


Library category	ESTs
gynoecious flower library	3
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU122019 vs. TrEMBL
Match: A0A0A0LNN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G441240 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 3


Query: 144 YVC-FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 203
           ++C FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS
Sbjct: 222 HICVFEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 281

Query: 204 NKKLNKLMVDFESGDSC 263
           NKKLNKLMVDFESGDSC
Sbjct: 282 NKKLNKLMVDFESGDSC 298

Query: 264  323
           
Sbjct: 342  298

Query: 324  372
           
Sbjct: 402  298

[Close]

BLAST of CU122019 vs. TrEMBL
Match: A0A0A0LNN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G441240 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2


Query: 2   VNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVF 61
           VNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVF
Sbjct: 176 VNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVF 226

Query: 62   121
           
Sbjct: 236  226

Query: 122  155
           
Sbjct: 296  226

HSP 2 Score: 98.2 bits (243), Expect = 9.4e-18
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 3


Query: 144 YVC-FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 203
           ++C FED+SSYGRYLCFNN+IN ++EA++LAH+L+PPS    S  P S ED+ V+QQ IS
Sbjct: 231 HICVFEDISSYGRYLCFNNVINCNEEAIKLAHILVPPSE---SSVPQSFEDTRVHQQRIS 290

Query: 204 NKKLNKLMVDFES 263
           NKKLNKLMVDF+S
Sbjct: 291 NKKLNKLMVDFDS 300

Query: 264  323
           
Sbjct: 351  300

Query: 324  360
           
Sbjct: 411  300

[Close]

BLAST of CU122019 vs. TrEMBL
Match: A0A067KTP5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02552 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.3e-13
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 2


Query: 2   VNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVF 61
           +NMVSIN GL+M  D+T+ NPYLKGAAEMYE GV VTVDL F VDAHICVF
Sbjct: 185 INMVSINAGLLMSPDLTITNPYLKGAAEMYEYGVFVTVDLSFNVDAHICVF 235

Query: 62   121
           
Sbjct: 245  235

Query: 122  155
           
Sbjct: 305  235

HSP 2 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 3


Query: 153 FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGISNKKL 212
           FEDVSSYGRYLCFN +IN+ K+A  LA+MLLPPS+   S    SLED  VY+Q ISNKKL
Sbjct: 256 FEDVSSYGRYLCFNRVINNTKDATTLANMLLPPSA---SSGTQSLEDDTVYEQRISNKKL 315

Query: 213 NKLMVDFESG 272
           NKLM+ F++G
Sbjct: 316 NKLMLGFDTG 322

Query: 273  332
           
Sbjct: 376  322

Query: 333  363
           
Sbjct: 436  322

[Close]

BLAST of CU122019 vs. TrEMBL
Match: K4BJD4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 2


Query: 2   VNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVF 61
           VNMVSIN GL++  D+ +  PYLKGAAEMYEDGV V VDLKF+VDAH+CVF
Sbjct: 206 VNMVSINAGLLIHPDLNIREPYLKGAAEMYEDGVFVAVDLKFLVDAHMCVF 256

Query: 62   121
           
Sbjct: 266  256

Query: 122  155
           
Sbjct: 326  256

HSP 2 Score: 91.7 bits (226), Expect = 8.8e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 3


Query: 153 FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGISNKKL 212
           FEDVSSYGRYLCFN +IN+ K+A  LA+MLLPPS+   S    SLED  VY+Q ISNKKL
Sbjct: 256 FEDVSSYGRYLCFNRVINTTKDATTLANMLLPPSA---SSETQSLEDDTVYEQRISNKKL 315

Query: 213 NKLMVDFESG 272
           NKLM+ F++G
Sbjct: 316 NKLMLGFDTG 322

Query: 273  332
           
Sbjct: 376  322

Query: 333  363
           
Sbjct: 436  322

[Close]

BLAST of CU122019 vs. TrEMBL
Match: A0A0V0I0C6_SOLCH (Putative cinnamoyl-CoA reductase 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 2


Query: 2   VNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVF 61
           VNMVSINGGL++  D+ +  PYLKGAAEMYEDGV V VDLKF+VDAH+CVF
Sbjct: 206 VNMVSINGGLLIHPDLNIREPYLKGAAEMYEDGVFVAVDLKFLVDAHMCVF 256

Query: 62   121
           
Sbjct: 266  256

Query: 122  155
           
Sbjct: 326  256

HSP 2 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 3


Query: 153 FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPP-------SLEDSVVYQQ 212
           FED SSYGRYLCFN++INS+++A+ LA+MLLPPS    S  PP       +LED+ VYQQ
Sbjct: 235 FEDSSSYGRYLCFNHVINSNQDAIHLANMLLPPSQ---STPPPQSLSTKDNLEDTRVYQQ 294

Query: 213 GISNKKLNKLMVDFES 272
            ISNKKLNKLMVDF S
Sbjct: 295 RISNKKLNKLMVDFRS 307

Query: 273  332
           
Sbjct: 355  307

Query: 333  360
           
Sbjct: 415  307

[Close]

BLAST of CU122019 vs. NCBI nr
Match: gi|449460698|ref|XP_004148082.1| (PREDICTED: cinnamoyl-CoA reductase 1-like [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 6.0e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 3


Query: 144 YVC-FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 203
           ++C FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS
Sbjct: 222 HICVFEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 281

Query: 204 NKKLNKLMVDFESGDSC 263
           NKKLNKLMVDFESGDSC
Sbjct: 282 NKKLNKLMVDFESGDSC 298

Query: 264  323
           
Sbjct: 342  298

Query: 324  372
           
Sbjct: 402  298

[Close]

BLAST of CU122019 vs. NCBI nr
Match: gi|659118540|ref|XP_008459174.1| (PREDICTED: tetraketide alpha-pyrone reductase 1-like [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.8e-33
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 3


Query: 144 YVC-FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 203
           ++C FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPS EDSVVYQQGIS
Sbjct: 147 HICVFEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSFEDSVVYQQGIS 206

Query: 204 NKKLNKLMVDFESGDSC 263
           NKKLNKLMVDFESGDSC
Sbjct: 207 NKKLNKLMVDFESGDSC 223

Query: 264  323
           
Sbjct: 267  223

Query: 324  372
           
Sbjct: 327  223

[Close]

BLAST of CU122019 vs. NCBI nr
Match: gi|802585085|ref|XP_012070234.1| (PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas])

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 3


Query: 144 YVC-FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGIS 203
           ++C FED+SSYGRYLCFNN+IN ++EA++LAH+L+PPS    S  P S ED+ V+QQ IS
Sbjct: 231 HICVFEDISSYGRYLCFNNVINCNEEAIKLAHILVPPSE---SSVPQSFEDTRVHQQRIS 290

Query: 204 NKKLNKLMVDFES 263
           NKKLNKLMVDF+S
Sbjct: 291 NKKLNKLMVDFDS 300

Query: 264  323
           
Sbjct: 351  300

Query: 324  360
           
Sbjct: 411  300

[Close]

BLAST of CU122019 vs. NCBI nr
Match: gi|225454726|ref|XP_002272449.1| (PREDICTED: tetraketide alpha-pyrone reductase 1 [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 8.7e-17
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 3


Query: 153 FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGISNKKL 212
           FED SSYGRYLCFN++INS+++A+ LA+MLLPPS    +  P SLED+ VYQQ ISNKKL
Sbjct: 235 FEDSSSYGRYLCFNHVINSNQDAIHLANMLLPPSQS--TPPPQSLEDTRVYQQRISNKKL 294

Query: 213 NKLMVDFES 272
           NKLMVDF S
Sbjct: 295 NKLMVDFRS 301

Query: 273  332
           
Sbjct: 355  301

Query: 333  360
           
Sbjct: 415  301

[Close]

BLAST of CU122019 vs. NCBI nr
Match: gi|697094485|ref|XP_009606567.1| (PREDICTED: cinnamoyl-CoA reductase 2-like, partial [Nicotiana tomentosiformis])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 3


Query: 153 FEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGISNKKL 212
           FEDVSSYGRYLCFN +INS K+A  LA+MLLPPS+   S    SLED +VY+Q ISN+KL
Sbjct: 153 FEDVSSYGRYLCFNRVINSSKDATTLANMLLPPSA---SSKTESLEDDMVYEQRISNQKL 212

Query: 213 NKLMVDFESG 272
           NKLM++FE+G
Sbjct: 213 NKLMLEFETG 219

Query: 273  332
           
Sbjct: 273  219

Query: 333  363
           
Sbjct: 333  219

The following BLAST results are available for this feature:

BLAST of CU122019 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNN5_CUCSA	4.2e-34	96.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G441240 PE=4 SV=1	[more]
A0A0A0LNN5_CUCSA	2.0e-20	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G441240 PE=4 SV=1	[more]
A0A067KTP5_JATCU	5.3e-13	76.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02552 PE=3 SV=1	[more]
K4BJD4_SOLLC	2.0e-12	72.55	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A0V0I0C6_SOLCH	4.1e-13	74.51	Putative cinnamoyl-CoA reductase 1-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CU122019 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460698\|ref\|XP_004148082.1\|	6.0e-34	96.10	PREDICTED: cinnamoyl-CoA reductase 1-like [Cucumis sativus]	[more]
gi\|659118540\|ref\|XP_008459174.1\|	1.8e-33	94.81	PREDICTED: tetraketide alpha-pyrone reductase 1-like [Cucumis melo]	[more]
gi\|802585085\|ref\|XP_012070234.1\|	1.3e-17	65.75	PREDICTED: tetraketide alpha-pyrone reductase 1-like [Jatropha curcas]	[more]
gi\|225454726\|ref\|XP_002272449.1\|	8.7e-17	69.57	PREDICTED: tetraketide alpha-pyrone reductase 1 [Vitis vinifera]	[more]
gi\|697094485\|ref\|XP_009606567.1\|	1.5e-16	67.14	PREDICTED: cinnamoyl-CoA reductase 2-like, partial [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G441240	Csa2G441240	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0001535	G0001535	EST
G0063825	G0063825	EST
G0064107	G0064107	EST
H0163467	H0163467	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10366	NAD DEPENDENT EPIMERASE/DEHYDRATASE	coord: 2..120 score: 2.6
None	No IPR available	PANTHER	PTHR10366:SF428	SUBFAMILY NOT NAMED	coord: 2..120 score: 2.6