CU121998 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU121998
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 585078 .. 585674 (-)
Sequence length	523

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTTTCTTGTTTTCTTTTCGACAAAGAAAAATAACCCCTCTATTAAGTTCTTTTCCAATATATTTTTTTTTCACCACACGAATTACAAGCATAGAGGGCACTATATAATAAACACACTAAAAATATTCAAATATTGAAATTTGCAAAACACACGACTGACACAACCTAATGGTCGTAAGAGTTGAGACACAACCACTACATTACAATCATATTATGTTTAAAATACAACACTATTTAATACATATAGTAATCTAACACTCAAAATTAATATTAAAATACAAAAACAGATCATATAAGGAGGACACATACCTCTGCTAGCCCCTACGTAAACATGTGGGTGATTACCCGAACAAGATTATTAATATTAGTATGATTTGGTTCAATTTACTCTAAAAGGGGAGTTGTGATCATTGTAGGGAGACTTGAAGTAGTATACATCATTCTTTGCTTTGCTTTGATTGCCTGCTCCTCCCAATTTGTGGTAAAAGTAAAATAGAAGTAAAAGCAGTATGGTTTGTAGAAAG

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	2
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU121998 vs. TrEMBL
Match: A0A0A0LU67_CUCSA (Protein DETOXIFICATION OS=Cucumis sativus GN=Csa_1G003490 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3


Query: 387 NWEEQAIKAKQRMMYTTSSLPTMITTPLLE 446
           NWEEQAIKAKQRMMYTTSSLPTMITTPLLE
Sbjct: 466 NWEEQAIKAKQRMMYTTSSLPTMITTPLLE 495

Query: 447  477
           
Sbjct: 526  495

[Close]

BLAST of CU121998 vs. NCBI nr
Match: gi|778655463|ref|XP_004138084.2| (PREDICTED: MATE efflux family protein DTX1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3


Query: 387 NWEEQAIKAKQRMMYTTSSLPTMITTPLLE 446
           NWEEQAIKAKQRMMYTTSSLPTMITTPLLE
Sbjct: 466 NWEEQAIKAKQRMMYTTSSLPTMITTPLLE 495

Query: 447  477
           
Sbjct: 526  495

The following BLAST results are available for this feature:

BLAST of CU121998 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU67_CUCSA	2.2e-07	100.00	Protein DETOXIFICATION OS=Cucumis sativus GN=Csa_1G003490 PE=3 SV=1	[more]

BLAST of CU121998 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655463\|ref\|XP_004138084.2\|	3.1e-07	100.00	PREDICTED: MATE efflux family protein DTX1 [Cucumis sativus]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G003490	Csa1G003490	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02KVZLA	FKNP3UI02KVZLA	EST
G0069934	G0069934	EST
G0120413	G0120413	EST
H0025564	H0025564	EST
H0109683	H0109683	EST