CU121251 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU121251
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 2754296 .. 2754531 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTGATATCTCCTTCACTTCGATATAGAAGTTTTTACGGAAAGGCTGATAGTCCATCTTTGAATGGTCAACAATAGAGAGCTTCTCAGCCTTTGTCTTCTTCACCCTTTTCATGAACTCGTCGTCATCTTCATCTTCTAAAGTATCTCCATCGTTCTCAAGATCTCCATAGTCTGTGTCAGAATCTTCACCAGGAATTATTCTGCCCATTGATTTTATTTGAAATTCTTCTTTGAGT

Library


Library category	ESTs
fruit (8DPP) library	2

Homology

[Close]

BLAST of CU121251 vs. TrEMBL
Match: A0A0A0LPZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025140 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-20
Identity = 54/71 (76.06%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KSMGRIIPGEDSDTDY                 FMKRVKKTKAEKLSIVDHSKMDYQPFR
Sbjct: 374 KSMGRIIPGEDSDTDYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKMDYQPFR 433

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEIS
Sbjct: 434 KNFYIEVKEIS 444

Query: 123  182
           
Sbjct: 494  444

Query: 183  216
           
Sbjct: 554  444

[Close]

BLAST of CU121251 vs. TrEMBL
Match: V4U8B7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004206mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLSIVDHSK+DYQPFR
Sbjct: 367 KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFR 426

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEI+
Sbjct: 427 KNFYIEVKEIA 437

Query: 123  182
           
Sbjct: 487  437

Query: 183  216
           
Sbjct: 547  437

[Close]

BLAST of CU121251 vs. TrEMBL
Match: A0A067FDM7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001264mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLSIVDHSK+DYQPFR
Sbjct: 369 KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFR 428

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEI+
Sbjct: 429 KNFYIEVKEIA 439

Query: 123  182
           
Sbjct: 489  439

Query: 183  216
           
Sbjct: 549  439

[Close]

BLAST of CU121251 vs. TrEMBL
Match: A0A067F2E1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001264mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLSIVDHSK+DYQPFR
Sbjct: 369 KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFR 428

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEI+
Sbjct: 429 KNFYIEVKEIA 439

Query: 123  182
           
Sbjct: 489  439

Query: 183  216
           
Sbjct: 549  439

[Close]

BLAST of CU121251 vs. TrEMBL
Match: B9SW84_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0075460 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-18
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLS+VDHSK+DY+PFR
Sbjct: 429 KSLGRIIPGEDSDSDYGDLENDEGPLDDEDDDEFMKRVKKTKAEKLSVVDHSKIDYKPFR 488

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEIS
Sbjct: 489 KNFYIEVKEIS 499

Query: 123  182
           
Sbjct: 549  499

Query: 183  216
           
Sbjct: 609  499

[Close]

BLAST of CU121251 vs. NCBI nr
Match: gi|778656513|ref|XP_011649205.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 42 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-20
Identity = 54/71 (76.06%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KSMGRIIPGEDSDTDY                 FMKRVKKTKAEKLSIVDHSKMDYQPFR
Sbjct: 374 KSMGRIIPGEDSDTDYGDLENDGDTLEDEDDDEFMKRVKKTKAEKLSIVDHSKMDYQPFR 433

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEIS
Sbjct: 434 KNFYIEVKEIS 444

Query: 123  182
           
Sbjct: 494  444

Query: 183  216
           
Sbjct: 554  444

[Close]

BLAST of CU121251 vs. NCBI nr
Match: gi|659106989|ref|XP_008453490.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 42 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-20
Identity = 54/71 (76.06%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KSMGRIIPGEDSDTDY                 FMKRVKKTKAEKLSIVDHSKMDYQPFR
Sbjct: 373 KSMGRIIPGEDSDTDYGDLENDADTLEDEDDDEFMKRVKKTKAEKLSIVDHSKMDYQPFR 432

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEIS
Sbjct: 433 KNFYIEVKEIS 443

Query: 123  182
           
Sbjct: 493  443

Query: 183  216
           
Sbjct: 553  443

[Close]

BLAST of CU121251 vs. NCBI nr
Match: gi|641842656|gb|KDO61560.1| (hypothetical protein CISIN_1g001264mg [Citrus sinensis])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLSIVDHSK+DYQPFR
Sbjct: 369 KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFR 428

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEI+
Sbjct: 429 KNFYIEVKEIA 439

Query: 123  182
           
Sbjct: 489  439

Query: 183  216
           
Sbjct: 549  439

[Close]

BLAST of CU121251 vs. NCBI nr
Match: gi|567859192|ref|XP_006422279.1| (hypothetical protein CICLE_v10004206mg [Citrus clementina])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLSIVDHSK+DYQPFR
Sbjct: 367 KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFR 426

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEI+
Sbjct: 427 KNFYIEVKEIA 437

Query: 123  182
           
Sbjct: 487  437

Query: 183  216
           
Sbjct: 547  437

[Close]

BLAST of CU121251 vs. NCBI nr
Match: gi|641842655|gb|KDO61559.1| (hypothetical protein CISIN_1g001264mg [Citrus sinensis])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 50/71 (70.42%), Postives = 54/71 (76.06%), Query Frame = -2


Query: 3   KSMGRIIPGEDSDTDYXXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKMDYQPFR 62
           KS+GRIIPGEDSD+DY                 FMKRVKKTKAEKLSIVDHSK+DYQPFR
Sbjct: 369 KSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFR 428

Query: 63  KNFYIEVKEIS 122
           KNFYIEVKEI+
Sbjct: 429 KNFYIEVKEIA 439

Query: 123  182
           
Sbjct: 489  439

Query: 183  216
           
Sbjct: 549  439

The following BLAST results are available for this feature:

BLAST of CU121251 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPZ3_CUCSA	2.9e-20	76.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025140 PE=4 SV=1	[more]
V4U8B7_9ROSI	1.2e-18	70.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004206mg PE=4 SV=1	[more]
A0A067FDM7_CITSI	1.2e-18	70.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001264mg PE=4 SV=1	[more]
A0A067F2E1_CITSI	1.2e-18	70.42	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001264mg PE=4 SV=1	[more]
B9SW84_RICCO	2.1e-18	69.01	Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_007546...	[more]

BLAST of CU121251 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778656513\|ref\|XP_011649205.1\|	4.2e-20	76.06	PREDICTED: DEAD-box ATP-dependent RNA helicase 42 [Cucumis sativus]	[more]
gi\|659106989\|ref\|XP_008453490.1\|	4.2e-20	76.06	PREDICTED: DEAD-box ATP-dependent RNA helicase 42 [Cucumis melo]	[more]
gi\|641842656\|gb\|KDO61560.1\|	1.8e-18	70.42	hypothetical protein CISIN_1g001264mg [Citrus sinensis]	[more]
gi\|567859192\|ref\|XP_006422279.1\|	1.8e-18	70.42	hypothetical protein CICLE_v10004206mg [Citrus clementina]	[more]
gi\|641842655\|gb\|KDO61559.1\|	1.8e-18	70.42	hypothetical protein CISIN_1g001264mg [Citrus sinensis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G025140	Csa1G025140	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MBI7F	FKNP3UI02MBI7F	EST
FKNP3UI02NSU4K	FKNP3UI02NSU4K	EST