CU120581 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU120581
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 224284 .. 225481 (-)
Sequence length266
The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGGAGGGTTCCGGCGCCACATTCGAATCGCAAATTCTCGTCGACCCTTCCCGAATTGTCAATAGAGAAGGAGAAGGAGATTTGATCTGATAGGATCAAGCAACTGTAACAAGTCCGAGAGGACCGCACCTAGTCCGGCCATATCTATCTCAAGATGAAAGTAAAAAAGTTGAAGACTGCTACAACTTCTAATACTAATGTTGATTTGAAGTCCATCATTCATCAGCATGCCCTGTTCATCGACAAGTTGGTGGAGCTC
BLAST of CU120581 vs. TrEMBL
Match: A0A0A0LNJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001420 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 3

Query: 162 MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL 221
           MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL
Sbjct: 1   MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL 35

Query: 222 267
           
Sbjct: 61  35

BLAST of CU120581 vs. NCBI nr
Match: gi|449440532|ref|XP_004138038.1| (PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 3

Query: 162 MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL 221
           MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL
Sbjct: 1   MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL 35

Query: 222 267
           
Sbjct: 61  35

BLAST of CU120581 vs. NCBI nr
Match: gi|659128866|ref|XP_008464410.1| (PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 3

Query: 162 MKVKKLKTATTSNTNVDLKSIIHQHALFIDKLVEL 221
           MKVKK KTA+TSNTNVDLKSIIHQHALFIDKLVEL
Sbjct: 1   MKVKKSKTASTSNTNVDLKSIIHQHALFIDKLVEL 35

Query: 222 267
           
Sbjct: 61  35

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LNJ3_CUCSA1.2e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G001420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449440532|ref|XP_004138038.1|3.8e-09100.00PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis sativus][more]
gi|659128866|ref|XP_008464410.1|5.4e-0894.29PREDICTED: ribosomal RNA-processing protein 14-C [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G001420Csa1G001420gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KP5FFFKNP3UI02KP5FFEST
FKNP3UI02L8O7RFKNP3UI02L8O7REST
FKNP3UI02NK0IVFKNP3UI02NK0IVEST
FKNP3UI02NML20FKNP3UI02NML20EST
G0067902G0067902EST
H0113288H0113288EST