CU120103 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU120103
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
LocationChr4 : 19998029 .. 20000588 (-)
Sequence length242
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AATAAACTATTACCCGCGGTGCCCGGAGCCGGAGAAGGTGATCGGACTGACGCCTCATTCCGACTCGGTTGGGCTAACGATTCTGCTCCAAATCAACGAAGTAGAAGGTCTGAAGATTAAGAAAGAAGGAAAATTGGATTACCGTTATGCCCCCTTCCAAATGCCTTCATCGTTAACATTGGCGACATCTTGGAGATGGTAACAAAATGGGAAATACAAAAGCATAGAGCATTGTGCAACAG
Library
Library categoryESTs
gynoecious flower library2
Homology
[Close]
BLAST of CU120103 vs. Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-16
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CP+P++VIGLTPHSDSVGLT+L+Q+N+VEGL+IKK+GK      P      + +
Sbjct: 215 MNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKW-VPVKPLPNAFIVNI 274

Query: 62  ATSWRW*QNGKYKSIEH 121
                   NG Y+SIEH
Sbjct: 275 GDVLEIITNGTYRSIEH 290

Query: 122  181
           
Sbjct: 335  290

Query: 182  233
           
Sbjct: 395  290


HSP 2 Score: 41.2 bits (95), Expect = 6.2e-03
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1 

Query: 139 LPLCPLPNAFIVNIGDILEMVTK--WEIQKHRALCN 198
           +P+ PLPNAFIVNIGD+LE++T   +   +HR + N
Sbjct: 260 VPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVN 295

Query: 199  241
           
Sbjct: 320  295

[Close]
BLAST of CU120103 vs. Swiss-Prot
Match: DIOX2_PAPSO (Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-13
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CP+PE  IGLTPHSD  GLTILLQ+NEVEGL+IK EG+      P      + +
Sbjct: 220 MNYYPPCPQPELAIGLTPHSDFGGLTILLQLNEVEGLQIKNEGRW-ISVKPLPNAFVVNV 279

Query: 62  ATSWRW*QNGKYKSIEHCA 121
                   NG Y+S++H A
Sbjct: 280 GDVLEIMTNGMYRSVDHRA 297

Query: 122  181
           
Sbjct: 340  297

Query: 182  239
           
Sbjct: 400  297

[Close]
BLAST of CU120103 vs. Swiss-Prot
Match: DIOX3_PAPSO (Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-12
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CP PE V+GLT HSD  GLTILLQ+NEVEGL+I+KE +      P      + +
Sbjct: 217 MNYYPPCPRPELVLGLTSHSDFSGLTILLQLNEVEGLQIRKEERW-ISIKPLPDAFIVNV 276

Query: 62  ATSWRW*QNGKYKSIEHCA 121
                   NG Y+S+EH A
Sbjct: 277 GDILEIMTNGIYRSVEHRA 294

Query: 122  181
           
Sbjct: 337  294

Query: 182  239
           
Sbjct: 397  294

[Close]
BLAST of CU120103 vs. Swiss-Prot
Match: DIOX1_PAPSO (Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-12
Identity = 39/79 (49.37%), Postives = 45/79 (56.96%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CP+P   IGLT HSD  GLTILLQINEVEGL+IK+EG       P      + +
Sbjct: 220 MNYYPPCPQPNLAIGLTSHSDFGGLTILLQINEVEGLQIKREGTW-ISVKPLPNAFVVNV 279

Query: 62  ATSWRW*QNGKYKSIEHCA 121
                   NG Y S++H A
Sbjct: 280 GDILEIMTNGIYHSVDHRA 297

Query: 122  181
           
Sbjct: 340  297

Query: 182  239
           
Sbjct: 400  297

[Close]
BLAST of CU120103 vs. Swiss-Prot
Match: DLO2_ARATH (Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana GN=DLO2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-08
Identity = 34/79 (43.04%), Postives = 43/79 (54.43%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           INYYPRCP+PE   GL  H D+  +T+LLQ +EV GL++ K+GK      P      + L
Sbjct: 201 INYYPRCPQPELTYGLPGHKDANLITVLLQ-DEVSGLQVFKDGKW-IAVNPVPNTFIVNL 260

Query: 62  ATSWRW*QNGKYKSIEHCA 121
               +   N KYKS+ H A
Sbjct: 261 GDQMQVISNEKYKSVLHRA 277

Query: 122  181
           
Sbjct: 321  277

Query: 182  239
           
Sbjct: 381  277

[Close]
BLAST of CU120103 vs. TrEMBL
Match: A0A0A0KZZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622820 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.9e-21
Identity = 56/80 (70.00%), Postives = 58/80 (72.50%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEG       P      + +
Sbjct: 56  INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGNW-ITVMPLPNAFIVNI 115

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NGKYKSIEHCAT
Sbjct: 116 GDILEMVTNGKYKSIEHCAT 134

Query: 122  181
           
Sbjct: 176  134

Query: 182  241
           
Sbjct: 236  134

[Close]
BLAST of CU120103 vs. TrEMBL
Match: B9GHE6_POPTR (SENESCENCE-RELATED GENE 1 family protein OS=Populus trichocarpa GN=POPTR_0001s39130g PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-15
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGK-LDYRYAP----FQMP 61
           +NYYP CP+P+KVIGLTPHSD+VGLTILLQ+NEVEGL++KK+GK +  +  P    F + 
Sbjct: 212 MNYYPPCPQPDKVIGLTPHSDAVGLTILLQVNEVEGLQVKKDGKWVPVKPLPNAFIFNVG 271

Query: 62  SSLTLATSWRW*QNGKYKSIEHCAT 121
             L + T      NG Y+SIEH AT
Sbjct: 272 DILEIIT------NGTYRSIEHRAT 290

Query: 122  181
           
Sbjct: 332  290

Query: 182  241
           
Sbjct: 392  290

[Close]
BLAST of CU120103 vs. TrEMBL
Match: B9SR52_RICCO (Naringenin,2-oxoglutarate 3-dioxygenase, putative OS=Ricinus communis GN=RCOM_1181490 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-15
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           INYYP CP+PEKVIGLTPHSD+ GLTILLQ+NEVEGL+I K GK      P      + +
Sbjct: 174 INYYPPCPQPEKVIGLTPHSDATGLTILLQLNEVEGLQINKNGKW-VTVKPIPNAFIINI 233

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NG+Y+SIEH AT
Sbjct: 234 GDILEIISNGRYRSIEHRAT 252

Query: 122  181
           
Sbjct: 294  252

Query: 182  241
           
Sbjct: 354  252

[Close]
BLAST of CU120103 vs. TrEMBL
Match: A0A0S3SK10_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G211100 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CPEP+KVIGLTPHSD +GLTILLQ+NEVEGL+I+K+G L     P      + +
Sbjct: 213 MNYYPPCPEPDKVIGLTPHSDGIGLTILLQVNEVEGLQIRKDG-LWVPVKPLPNAFIVNV 272

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NG YKSIEH AT
Sbjct: 273 GDILEIITNGNYKSIEHRAT 291

Query: 122  181
           
Sbjct: 333  291

Query: 182  241
           
Sbjct: 393  291

[Close]
BLAST of CU120103 vs. TrEMBL
Match: A0A0L9UJ17_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g029000 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CPEP+KVIGLTPHSD +GLTILLQ+NEVEGL+I+K+G L     P      + +
Sbjct: 213 MNYYPPCPEPDKVIGLTPHSDGIGLTILLQVNEVEGLQIRKDG-LWVPVKPLPNAFIVNV 272

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NG YKSIEH AT
Sbjct: 273 GDILEIITNGNYKSIEHRAT 291

Query: 122  181
           
Sbjct: 333  291

Query: 182  241
           
Sbjct: 393  291

[Close]
BLAST of CU120103 vs. NCBI nr
Match: gi|778695605|ref|XP_004146011.2| (PREDICTED: protein SRG1-like [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 56/80 (70.00%), Postives = 58/80 (72.50%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEG       P      + +
Sbjct: 214 INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGNW-ITVMPLPNAFIVNI 273

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NGKYKSIEHCAT
Sbjct: 274 GDILEMVTNGKYKSIEHCAT 292

Query: 122  181
           
Sbjct: 334  292

Query: 182  241
           
Sbjct: 394  292

[Close]
BLAST of CU120103 vs. NCBI nr
Match: gi|700199865|gb|KGN55023.1| (hypothetical protein Csa_4G622820 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 56/80 (70.00%), Postives = 58/80 (72.50%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEG       P      + +
Sbjct: 56  INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGNW-ITVMPLPNAFIVNI 115

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NGKYKSIEHCAT
Sbjct: 116 GDILEMVTNGKYKSIEHCAT 134

Query: 122  181
           
Sbjct: 176  134

Query: 182  241
           
Sbjct: 236  134

[Close]
BLAST of CU120103 vs. NCBI nr
Match: gi|659127646|ref|XP_008463813.1| (PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-19
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CPEPEKVIGL PHSDSVGLTILLQIN+VEGLKIKKEG       P      + +
Sbjct: 96  MNYYPPCPEPEKVIGLAPHSDSVGLTILLQINKVEGLKIKKEGNW-INVMPLPNAFIVNI 155

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NG+YKSIEHCAT
Sbjct: 156 GDILEMVTNGEYKSIEHCAT 174

Query: 122  181
           
Sbjct: 216  174

Query: 182  241
           
Sbjct: 276  174

[Close]
BLAST of CU120103 vs. NCBI nr
Match: gi|659127618|ref|XP_008463796.1| (PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.6e-19
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGKLDYRYAPFQMPSSLTL 61
           +NYYP CPEPEKVIGLTPHSD+ GLTILLQIN+VEGLKIKKEG       P      + +
Sbjct: 213 MNYYPPCPEPEKVIGLTPHSDAAGLTILLQINKVEGLKIKKEGNW-ITVMPLPNAFIVNI 272

Query: 62  ATSWRW*QNGKYKSIEHCAT 121
                   NG+YKSIEHCAT
Sbjct: 273 GDILEMVTNGEYKSIEHCAT 291

Query: 122  181
           
Sbjct: 333  291

Query: 182  241
           
Sbjct: 393  291

[Close]
BLAST of CU120103 vs. NCBI nr
Match: gi|224061385|ref|XP_002300453.1| (SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 2 

Query: 2   INYYPRCPEPEKVIGLTPHSDSVGLTILLQINEVEGLKIKKEGK-LDYRYAP----FQMP 61
           +NYYP CP+P+KVIGLTPHSD+VGLTILLQ+NEVEGL++KK+GK +  +  P    F + 
Sbjct: 212 MNYYPPCPQPDKVIGLTPHSDAVGLTILLQVNEVEGLQVKKDGKWVPVKPLPNAFIFNVG 271

Query: 62  SSLTLATSWRW*QNGKYKSIEHCAT 121
             L + T      NG Y+SIEH AT
Sbjct: 272 DILEIIT------NGTYRSIEHRAT 290

Query: 122  181
           
Sbjct: 332  290

Query: 182  241
           
Sbjct: 392  290

The following BLAST results are available for this feature:
BLAST of CU120103 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRG1_ARATH4.9e-1653.25Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1[more]
DIOX2_PAPSO1.0e-1350.63Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DI... [more]
DIOX3_PAPSO3.3e-1249.37Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1[more]
DIOX1_PAPSO9.6e-1249.37Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1[more]
DLO2_ARATH6.4e-0843.04Protein DMR6-LIKE OXYGENASE 2 OS=Arabidopsis thaliana GN=DLO2 PE=2 SV=1[more]
BLAST of CU120103 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZZ7_CUCSA7.9e-2170.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G622820 PE=3 SV=1[more]
B9GHE6_POPTR1.3e-1556.47SENESCENCE-RELATED GENE 1 family protein OS=Populus trichocarpa GN=POPTR_0001s39... [more]
B9SR52_RICCO1.7e-1557.50Naringenin,2-oxoglutarate 3-dioxygenase, putative OS=Ricinus communis GN=RCOM_11... [more]
A0A0S3SK10_PHAAN2.9e-1557.50Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G211100 PE=... [more]
A0A0L9UJ17_PHAAN2.9e-1557.50Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g029000 PE=3 SV=1[more]
BLAST of CU120103 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778695605|ref|XP_004146011.2|4.6e-2270.00PREDICTED: protein SRG1-like [Cucumis sativus][more]
gi|700199865|gb|KGN55023.1|4.6e-2270.00hypothetical protein Csa_4G622820 [Cucumis sativus][more]
gi|659127646|ref|XP_008463813.1|1.6e-1963.75PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo][more]
gi|659127618|ref|XP_008463796.1|3.6e-1962.50PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo][more]
gi|224061385|ref|XP_002300453.1|4.4e-1756.47SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G622820Csa4G622820gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0187806G0187806EST
G0193863G0193863EST