CU119538 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU119538
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 12540905 .. 12541118 (-)
Sequence length	216

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACGGAGAATGTAGGGTTCATGTACCAAGCTTGTTCTGGGATCTGTCTTGGGATTTTGTTAGTCTTCACAGGGTCCTCAATTGCTGGCTTCTTAAACCCAAGATAGCCGCCTACGAAGACAAGAGGAACTGAGATACAGAAACCATAAGAATACTAGCGCAAACATGGTTCCAAATGGCACTGCTCCAGAGGATTTTTCTACCCCCAGATTAAAGCA

Library


Library category	ESTs
gynoecious flower library	2

Homology

[Close]

BLAST of CU119538 vs. Swiss-Prot
Match: TMN8_ARATH (Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-18
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPA +DPVKTNKIPRQIPEQAWYMNP FS
Sbjct: 463 FGISVPLVFVGGYIGFKKPAADDPVKTNKIPRQIPEQAWYMNPVFS 508

Query: 63   122
           
Sbjct: 523  508

Query: 123  141
           
Sbjct: 583  508

HSP 2 Score: 43.9 bits (102), Expect = 8.7e-04
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           +KSSGAVPFGTMFAL+FLWF
Sbjct: 444 QKSSGAVPFGTMFALIFLWF 463

[Close]

BLAST of CU119538 vs. Swiss-Prot
Match: TMN9_ARATH (Transmembrane 9 superfamily member 9 OS=Arabidopsis thaliana GN=TMN9 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-17
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVG YLGFKKP ++DPVKTNKIPRQIPEQAWYMNP FS
Sbjct: 459 FGISVPLVFVGAYLGFKKPPLDDPVKTNKIPRQIPEQAWYMNPIFS 504

Query: 63   122
           
Sbjct: 519  504

Query: 123  141
           
Sbjct: 579  504

HSP 2 Score: 43.9 bits (102), Expect = 8.7e-04
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           +KSSGAVPFGTMFAL+FLWF
Sbjct: 440 QKSSGAVPFGTMFALIFLWF 459

[Close]

BLAST of CU119538 vs. Swiss-Prot
Match: TMN10_ARATH (Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana GN=TMN10 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.7e-17
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVF+GGY+GF+KPA EDPVKTNKIPRQIP QAWYMNP FS
Sbjct: 452 FGISVPLVFIGGYIGFRKPAPEDPVKTNKIPRQIPTQAWYMNPIFS 497

Query: 63   122
           
Sbjct: 512  497

Query: 123  141
           
Sbjct: 572  497

HSP 2 Score: 41.6 bits (96), Expect = 4.3e-03
Identity = 18/20 (90.00%), Postives = 17/20 (85.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           +KSSGAVPFGTMFALV LWF
Sbjct: 433 QKSSGAVPFGTMFALVVLWF 452

[Close]

BLAST of CU119538 vs. Swiss-Prot
Match: TMN7_ARATH (Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.7e-17
Identity = 47/75 (62.67%), Postives = 49/75 (65.33%), Query Frame = -2


Query: 3   ALIWG*KN----PLEQCHLEPCLR*YSYGFCISVPLVFVGGYLGFKKPAIEDPVKTNKIP 62
           ALIWG ++    P        CL      F ISVPLVFVG YLG+KKPAIEDPVKTNKIP
Sbjct: 432 ALIWGEQSSGAIPFGTMFALFCL-----WFGISVPLVFVGSYLGYKKPAIEDPVKTNKIP 491

Query: 63  RQIPEQAWYMNPTFS 122
           RQ+PEQ WYM P FS
Sbjct: 492 RQVPEQPWYMKPVFS 501

Query: 123  182
           
Sbjct: 552  501

Query: 183  216
           
Sbjct: 612  501

[Close]

BLAST of CU119538 vs. Swiss-Prot
Match: TMN6_ARATH (Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-16
Identity = 45/74 (60.81%), Postives = 47/74 (63.51%), Query Frame = -2


Query: 3   LIWG*KN----PLEQCHLEPCLR*YSYGFCISVPLVFVGGYLGFKKPAIEDPVKTNKIPR 62
           LIWG ++    P        CL      F ISVPLVF+G YLG KKPAIEDPVKTNKIPR
Sbjct: 429 LIWGERSSGAIPFSTMFALVCL-----WFGISVPLVFIGSYLGHKKPAIEDPVKTNKIPR 488

Query: 63  QIPEQAWYMNPTFS 122
           Q+PEQ WYM P FS
Sbjct: 489 QVPEQPWYMKPGFS 497

Query: 123  182
           
Sbjct: 549  497

Query: 183  213
           
Sbjct: 609  497

[Close]

BLAST of CU119538 vs. TrEMBL
Match: A0A0A0LTQ4_CUCSA (Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.8e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 453 FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 498

Query: 63   122
           
Sbjct: 513  498

Query: 123  141
           
Sbjct: 573  498

[Close]

BLAST of CU119538 vs. TrEMBL
Match: A0A0A0LTQ4_CUCSA (Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-02
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           EKSSGAVPFGTMFALVFLWF
Sbjct: 434 EKSSGAVPFGTMFALVFLWF 453

HSP 2 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 361 FGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 406

Query: 63   122
           
Sbjct: 421  406

Query: 123  141
           
Sbjct: 481  406

[Close]

BLAST of CU119538 vs. TrEMBL
Match: A0A0D2V2V7_GOSRA (Transmembrane 9 superfamily member (Fragment) OS=Gossypium raimondii GN=B456_010G2446001 PE=3 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-01
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           +KSSGAVPFGTMFALV +WF
Sbjct: 342 QKSSGAVPFGTMFALVLMWF 361

HSP 2 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 200 FGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 245

Query: 63   122
           
Sbjct: 260  245

Query: 123  141
           
Sbjct: 320  245

[Close]

BLAST of CU119538 vs. TrEMBL
Match: A0A0D2QZ94_GOSRA (Transmembrane 9 superfamily member (Fragment) OS=Gossypium raimondii GN=B456_010G2446001 PE=3 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-01
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           +KSSGAVPFGTMFALV +WF
Sbjct: 181 QKSSGAVPFGTMFALVLMWF 200

HSP 2 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 250 FGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 295

Query: 63   122
           
Sbjct: 310  295

Query: 123  141
           
Sbjct: 370  295

[Close]

BLAST of CU119538 vs. TrEMBL
Match: A0A0D2U5L8_GOSRA (Transmembrane 9 superfamily member (Fragment) OS=Gossypium raimondii GN=B456_010G2446001 PE=3 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-01
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = -1


Query: 139 EKSSGAVPFGTMFALVFLWF 198
           +KSSGAVPFGTMFALV +WF
Sbjct: 231 QKSSGAVPFGTMFALVLMWF 250

HSP 2 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 459 FGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 504

Query: 63   122
           
Sbjct: 519  504

Query: 123  141
           
Sbjct: 579  504

[Close]

BLAST of CU119538 vs. NCBI nr
Match: gi|449457879|ref|XP_004146675.1| (PREDICTED: transmembrane 9 superfamily member 9-like [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 453 FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 498

Query: 63   122
           
Sbjct: 513  498

Query: 123  141
           
Sbjct: 573  498

[Close]

BLAST of CU119538 vs. NCBI nr
Match: gi|659086301|ref|XP_008443860.1| (PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 453 FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 498

Query: 63   122
           
Sbjct: 513  498

Query: 123  141
           
Sbjct: 573  498

[Close]

BLAST of CU119538 vs. NCBI nr
Match: gi|657971965|ref|XP_008377774.1| (PREDICTED: transmembrane 9 superfamily member 4-like [Malus domestica])

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-18
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = -2


Query: 3   LIWG*KNPLEQCHLEPCLR*YSYGFCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPE 62
           +IWG +N      +   L    + F ISVPLVFVGGY+GF+KPA+EDPVKTNK+PRQIPE
Sbjct: 402 VIWG-QNSSGAVTIGTMLTLVFFWFGISVPLVFVGGYVGFRKPALEDPVKTNKVPRQIPE 461

Query: 63  QAWYMNPTFS 122
           QAWYMNP FS
Sbjct: 462 QAWYMNPVFS 470

Query: 123  182
           
Sbjct: 522  470

Query: 183  213
           
Sbjct: 582  470

[Close]

BLAST of CU119538 vs. NCBI nr
Match: gi|823233539|ref|XP_012449404.1| (PREDICTED: transmembrane 9 superfamily member 8-like isoform X3 [Gossypium raimondii])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 458 FGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 503

Query: 63   122
           
Sbjct: 518  503

Query: 123  141
           
Sbjct: 578  503

[Close]

BLAST of CU119538 vs. NCBI nr
Match: gi|763796310|gb|KJB63265.1| (hypothetical protein B456_010G2446001, partial [Gossypium raimondii])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = -2


Query: 3   FCISVPLVFVGGYLGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 62
           F ISVPLVFVGGY+GFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS
Sbjct: 361 FGISVPLVFVGGYVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPTFS 406

Query: 63   122
           
Sbjct: 421  406

Query: 123  141
           
Sbjct: 481  406

The following BLAST results are available for this feature:

BLAST of CU119538 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMN8_ARATH	4.7e-18	89.13	Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1	[more]
TMN9_ARATH	3.0e-17	86.96	Transmembrane 9 superfamily member 9 OS=Arabidopsis thaliana GN=TMN9 PE=2 SV=1	[more]
TMN10_ARATH	6.7e-17	84.78	Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana GN=TMN10 PE=2 SV=1	[more]
TMN7_ARATH	6.7e-17	62.67	Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1	[more]
TMN6_ARATH	3.3e-16	60.81	Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1	[more]

BLAST of CU119538 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTQ4_CUCSA	3.8e-19	100.00	Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1	[more]
A0A0A0LTQ4_CUCSA	3.3e-02	100.00	Transmembrane 9 superfamily member OS=Cucumis sativus GN=Csa_1G256720 PE=3 SV=1	[more]
A0A0D2V2V7_GOSRA	6.2e-01	85.00	Transmembrane 9 superfamily member (Fragment) OS=Gossypium raimondii GN=B456_010...	[more]
A0A0D2QZ94_GOSRA	6.2e-01	85.00	Transmembrane 9 superfamily member (Fragment) OS=Gossypium raimondii GN=B456_010...	[more]
A0A0D2U5L8_GOSRA	6.2e-01	85.00	Transmembrane 9 superfamily member (Fragment) OS=Gossypium raimondii GN=B456_010...	[more]

BLAST of CU119538 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457879\|ref\|XP_004146675.1\|	1.9e-19	100.00	PREDICTED: transmembrane 9 superfamily member 9-like [Cucumis sativus]	[more]
gi\|659086301\|ref\|XP_008443860.1\|	1.9e-19	100.00	PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis melo]	[more]
gi\|657971965\|ref\|XP_008377774.1\|	8.0e-18	64.29	PREDICTED: transmembrane 9 superfamily member 4-like [Malus domestica]	[more]
gi\|823233539\|ref\|XP_012449404.1\|	1.0e-17	95.65	PREDICTED: transmembrane 9 superfamily member 8-like isoform X3 [Gossypium raimo...	[more]
gi\|763796310\|gb\|KJB63265.1\|	1.0e-17	95.65	hypothetical protein B456_010G2446001, partial [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR004240	EMP70

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G256720	Csa1G256720	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0116885	G0116885	EST
G0175263	G0175263	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004240	Nonaspanin (TM9SF)	PANTHER	PTHR10766	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	coord: 7..72 score: 1.5
IPR004240	Nonaspanin (TM9SF)	PFAM	PF02990	EMP70	coord: 6..72 score: 7.6
None	No IPR available	PANTHER	PTHR10766:SF46	ENDOMEMBRANE FAMILY PROTEIN 70	coord: 7..72 score: 1.5