CU119110 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU119110
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionAP-3 complex subunit delta
LocationChr1 : 4296337 .. 4296469 (+)
Sequence length134
The following sequences are available for this feature:

transcribed_cluster sequence

AAACTCGAGAATTTTTGGTTGACGATGATTCCGTAATCTTAAGTATCTTGGATTGCATGCTCTTTCAATCCTTGTGCCAAAACACTCGTGGGCAGTTTTGGAGAATAAAGAGGTTGTAATCAAATCTCTAAGTG
Library categoryESTs
gynoecious flower library2
BLAST of CU119110 vs. Swiss-Prot
Match: AP3D_ARATH (AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-08
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NLKYLGL+ALSI+ PKH WAVLENKEVV+K++S
Sbjct: 311 NLKYLGLNALSIVAPKHLWAVLENKEVVVKAMS 343

Query: 95  134
           
Sbjct: 371 343

BLAST of CU119110 vs. TrEMBL
Match: A0A0A0LQE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042420 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS
Sbjct: 309 NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 341

Query: 95  134
           
Sbjct: 369 341

BLAST of CU119110 vs. TrEMBL
Match: A0A059A5D1_EUCGR (AP-3 complex subunit delta OS=Eucalyptus grandis GN=EUGRSUZ_K02232 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NLKYLGLHALSI+ PKHSWAVLENKEVVIKSLS
Sbjct: 309 NLKYLGLHALSIVAPKHSWAVLENKEVVIKSLS 341

Query: 95  134
           
Sbjct: 369 341

BLAST of CU119110 vs. TrEMBL
Match: D7L8G2_ARALL (AP-3 complex subunit delta OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_341963 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2

Query: 32  RNLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 91
           RNLKYLGLHALSI+ PKH WAVLENKE V+K+LS
Sbjct: 306 RNLKYLGLHALSIVAPKHLWAVLENKEAVVKALS 339

Query: 92  134
           
Sbjct: 366 339

BLAST of CU119110 vs. TrEMBL
Match: B9SFZ1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0726280 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-07
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 2

Query: 32  RNLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 91
           +NLKYLGLHAL+I+ PKH WAVLENKEVVI+SLS
Sbjct: 192 QNLKYLGLHALAIIAPKHLWAVLENKEVVIESLS 225

Query: 92  134
           
Sbjct: 252 225

BLAST of CU119110 vs. TrEMBL
Match: A0A0L9TI09_PHAAN (AP-3 complex subunit delta OS=Phaseolus angularis GN=LR48_Vigan847s001000 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-07
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NL+YLGLHALS+ VPKH WAVLENKE V+KSLS
Sbjct: 309 NLRYLGLHALSVAVPKHLWAVLENKEAVVKSLS 341

Query: 95  134
           
Sbjct: 369 341

BLAST of CU119110 vs. NCBI nr
Match: gi|659066742|ref|XP_008459026.1| (PREDICTED: AP-3 complex subunit delta [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS
Sbjct: 309 NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 341

Query: 95  134
           
Sbjct: 369 341

BLAST of CU119110 vs. NCBI nr
Match: gi|449439415|ref|XP_004137481.1| (PREDICTED: AP-3 complex subunit delta [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS
Sbjct: 309 NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 341

Query: 95  134
           
Sbjct: 369 341

BLAST of CU119110 vs. NCBI nr
Match: gi|702495110|ref|XP_010036902.1| (PREDICTED: AP-3 complex subunit delta [Eucalyptus grandis])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 2

Query: 35  NLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 94
           NLKYLGLHALSI+ PKHSWAVLENKEVVIKSLS
Sbjct: 309 NLKYLGLHALSIVAPKHSWAVLENKEVVIKSLS 341

Query: 95  134
           
Sbjct: 369 341

BLAST of CU119110 vs. NCBI nr
Match: gi|297834730|ref|XP_002885247.1| (hypothetical protein ARALYDRAFT_341963 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2

Query: 32  RNLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 91
           RNLKYLGLHALSI+ PKH WAVLENKE V+K+LS
Sbjct: 306 RNLKYLGLHALSIVAPKHLWAVLENKEAVVKALS 339

Query: 92  134
           
Sbjct: 366 339

BLAST of CU119110 vs. NCBI nr
Match: gi|1000954200|ref|XP_015578262.1| (PREDICTED: AP-3 complex subunit delta [Ricinus communis])

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-07
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 2

Query: 32  RNLKYLGLHALSILVPKHSWAVLENKEVVIKSLS 91
           +NLKYLGLHAL+I+ PKH WAVLENKEVVI+SLS
Sbjct: 212 QNLKYLGLHALAIIAPKHLWAVLENKEVVIESLS 245

Query: 92  134
           
Sbjct: 272 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AP3D_ARATH2.7e-0878.79AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LQE4_CUCSA2.9e-09100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042420 PE=4 SV=1[more]
A0A059A5D1_EUCGR1.9e-0893.94AP-3 complex subunit delta OS=Eucalyptus grandis GN=EUGRSUZ_K02232 PE=3 SV=1[more]
D7L8G2_ARALL2.1e-0782.35AP-3 complex subunit delta OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_341... [more]
B9SFZ1_RICCO3.6e-0782.35Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0726280 PE=4 SV=1[more]
A0A0L9TI09_PHAAN6.1e-0781.82AP-3 complex subunit delta OS=Phaseolus angularis GN=LR48_Vigan847s001000 PE=3 S... [more]
Match NameE-valueIdentityDescription
gi|659066742|ref|XP_008459026.1|2.5e-09100.00PREDICTED: AP-3 complex subunit delta [Cucumis melo][more]
gi|449439415|ref|XP_004137481.1|2.5e-09100.00PREDICTED: AP-3 complex subunit delta [Cucumis sativus][more]
gi|702495110|ref|XP_010036902.1|1.6e-0893.94PREDICTED: AP-3 complex subunit delta [Eucalyptus grandis][more]
gi|297834730|ref|XP_002885247.1|1.8e-0782.35hypothetical protein ARALYDRAFT_341963 [Arabidopsis lyrata subsp. lyrata][more]
gi|1000954200|ref|XP_015578262.1|3.0e-0782.35PREDICTED: AP-3 complex subunit delta [Ricinus communis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G042420Csa1G042420gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0004743G0004743EST
G0007898G0007898EST