CU118686 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118686
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	DUF1680 domain protein
Location	Chr4 : 11298295 .. 11299692 (-)
Sequence length	339

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTTTGCTGGTAATTCTCAAGCCTTAAAAATGGTTACATGGATGGTTGAGTACTTCTACAACCGGGTTCAAAATGTCATATTGAAGTACACTGTAGAGAGACACTATCGGTCCCTTAATGAAGAAACTGGTGGCATGAATGATGTGCTCTACCGGTTGTACAGGATAACAGGAAATACAAAGCACTTATTACTGGCACACCTTTTTGACAAACCGTGCTTTCTAGGCCTTCTTGCCGTACAGGCAGAAGACATTTCAGGTTTCCATGTTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAGTCACCGGTGATCCACTGTATAATAG

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU118686 vs. TrEMBL
Match: A0A0R0HGV8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G131700 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGN QALKMVTWMV+YFYNRVQNVI KYTV RHY SLNEETGGMNDVLYRLY ITG++K
Sbjct: 256 FAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYESLNEETGGMNDVLYRLYSITGDSK 315

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HL+LAHLFDKPCFLGLLA+QA DI+ FH NTHIP+VVGSQMRYE+TGDPLY
Sbjct: 316 HLVLAHLFDKPCFLGLLAMQANDIANFHANTHIPVVVGSQMRYEITGDPLY 366

Query: 122  181
           
Sbjct: 376  366

Query: 182  241
           
Sbjct: 436  366

Query: 242  301
           
Sbjct: 496  366

Query: 302  335
           
Sbjct: 556  366

[Close]

BLAST of CU118686 vs. TrEMBL
Match: A0A0B2QNZ2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008801 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGN QALKMVTWMV+YFYNRVQNVI KYTV RHY SLNEETGGMNDVLYRLY ITG++K
Sbjct: 263 FAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYESLNEETGGMNDVLYRLYSITGDSK 322

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HL+LAHLFDKPCFLGLLA+QA DI+ FH NTHIP+VVGSQMRYE+TGDPLY
Sbjct: 323 HLVLAHLFDKPCFLGLLAMQANDIANFHANTHIPVVVGSQMRYEITGDPLY 373

Query: 122  181
           
Sbjct: 383  373

Query: 182  241
           
Sbjct: 443  373

Query: 242  301
           
Sbjct: 503  373

Query: 302  335
           
Sbjct: 563  373

[Close]

BLAST of CU118686 vs. TrEMBL
Match: I1LJU3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G131700 PE=4 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGN QALKMVTWMV+YFYNRVQNVI KYTV RHY SLNEETGGMNDVLYRLY ITG++K
Sbjct: 248 FAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYESLNEETGGMNDVLYRLYSITGDSK 307

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HL+LAHLFDKPCFLGLLA+QA DI+ FH NTHIP+VVGSQMRYE+TGDPLY
Sbjct: 308 HLVLAHLFDKPCFLGLLAMQANDIANFHANTHIPVVVGSQMRYEITGDPLY 358

Query: 122  181
           
Sbjct: 368  358

Query: 182  241
           
Sbjct: 428  358

Query: 242  301
           
Sbjct: 488  358

Query: 302  335
           
Sbjct: 548  358

[Close]

BLAST of CU118686 vs. TrEMBL
Match: K7LPJ3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G131700 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGN QALKMVTWMV+YFYNRVQNVI KYTV RHY SLNEETGGMNDVLYRLY ITG++K
Sbjct: 263 FAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYESLNEETGGMNDVLYRLYSITGDSK 322

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HL+LAHLFDKPCFLGLLA+QA DI+ FH NTHIP+VVGSQMRYE+TGDPLY
Sbjct: 323 HLVLAHLFDKPCFLGLLAMQANDIANFHANTHIPVVVGSQMRYEITGDPLY 373

Query: 122  181
           
Sbjct: 383  373

Query: 182  241
           
Sbjct: 443  373

Query: 242  301
           
Sbjct: 503  373

Query: 302  335
           
Sbjct: 563  373

[Close]

BLAST of CU118686 vs. TrEMBL
Match: A0A0V0IWU4_SOLCH (Putative proline--tRNA ligase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.0e-50
Identity = 93/110 (84.55%), Postives = 103/110 (93.64%), Query Frame = 2


Query: 5   AGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTKH 64
           AGN QALKM TWM EYFYNRVQNVI KYT+ERH+ SLNEETGGMNDVLY+LY +TGN+KH
Sbjct: 237 AGNDQALKMTTWMAEYFYNRVQNVITKYTIERHWLSLNEETGGMNDVLYKLYSVTGNSKH 296

Query: 65  LLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 124
           LLLAHLFDKPCFLGLLA++A+DISGFH NTHIP+VVGSQMRYE+TGDPLY
Sbjct: 297 LLLAHLFDKPCFLGLLALKADDISGFHANTHIPVVVGSQMRYEITGDPLY 346

Query: 125  184
           
Sbjct: 357  346

Query: 185  244
           
Sbjct: 417  346

Query: 245  304
           
Sbjct: 477  346

Query: 305  335
           
Sbjct: 537  346

[Close]

BLAST of CU118686 vs. NCBI nr
Match: gi|778693146|ref|XP_011653585.1| (PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-58
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK
Sbjct: 255 FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 314

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY
Sbjct: 315 HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 365

Query: 122  181
           
Sbjct: 375  365

Query: 182  241
           
Sbjct: 435  365

Query: 242  301
           
Sbjct: 495  365

Query: 302  335
           
Sbjct: 555  365

[Close]

BLAST of CU118686 vs. NCBI nr
Match: gi|659097647|ref|XP_008449737.1| (PREDICTED: uncharacterized protein LOC103491528 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 5.6e-58
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK
Sbjct: 255 FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 314

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIV+GSQMRYEVTGDPLY
Sbjct: 315 HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVIGSQMRYEVTGDPLY 365

Query: 122  181
           
Sbjct: 375  365

Query: 182  241
           
Sbjct: 435  365

Query: 242  301
           
Sbjct: 495  365

Query: 302  335
           
Sbjct: 555  365

[Close]

BLAST of CU118686 vs. NCBI nr
Match: gi|657984854|ref|XP_008384527.1| (PREDICTED: uncharacterized protein LOC103447130 isoform X1 [Malus domestica])

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-51
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FA N+QALKMVTWMVEYFYNRVQNVI KY+VERHY +LNEETGGMNDVLY+LY ITG+ K
Sbjct: 252 FADNAQALKMVTWMVEYFYNRVQNVIXKYSVERHYTALNEETGGMNDVLYKLYAITGDAK 311

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HLLLAHLFDKPCFLG+LAVQAEDISGFH NTHIPIV+G+QMRYEVTGDPLY
Sbjct: 312 HLLLAHLFDKPCFLGVLAVQAEDISGFHANTHIPIVIGAQMRYEVTGDPLY 362

Query: 122  181
           
Sbjct: 372  362

Query: 182  241
           
Sbjct: 432  362

Query: 242  301
           
Sbjct: 492  362

Query: 302  335
           
Sbjct: 552  362

[Close]

BLAST of CU118686 vs. NCBI nr
Match: gi|657984856|ref|XP_008384528.1| (PREDICTED: uncharacterized protein LOC103447130 isoform X2 [Malus domestica])

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-51
Identity = 97/111 (87.39%), Postives = 105/111 (94.59%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FA N+QALKMVTWMVEYFYNRVQNVI KY+VERHY +LNEETGGMNDVLY+LY ITG+ K
Sbjct: 252 FADNAQALKMVTWMVEYFYNRVQNVIXKYSVERHYTALNEETGGMNDVLYKLYAITGDAK 311

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HLLLAHLFDKPCFLG+LAVQAEDISGFH NTHIPIV+G+QMRYEVTGDPLY
Sbjct: 312 HLLLAHLFDKPCFLGVLAVQAEDISGFHANTHIPIVIGAQMRYEVTGDPLY 362

Query: 122  181
           
Sbjct: 372  362

Query: 182  241
           
Sbjct: 432  362

Query: 242  301
           
Sbjct: 492  362

Query: 302  335
           
Sbjct: 552  362

[Close]

BLAST of CU118686 vs. NCBI nr
Match: gi|947080898|gb|KRH29687.1| (hypothetical protein GLYMA_11G131700 [Glycine max])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 2


Query: 2   FAGNSQALKMVTWMVEYFYNRVQNVILKYTVERHYRSLNEETGGMNDVLYRLYRITGNTK 61
           FAGN QALKMVTWMV+YFYNRVQNVI KYTV RHY SLNEETGGMNDVLYRLY ITG++K
Sbjct: 256 FAGNPQALKMVTWMVDYFYNRVQNVITKYTVNRHYESLNEETGGMNDVLYRLYSITGDSK 315

Query: 62  HLLLAHLFDKPCFLGLLAVQAEDISGFHVNTHIPIVVGSQMRYEVTGDPLY 121
           HL+LAHLFDKPCFLGLLA+QA DI+ FH NTHIP+VVGSQMRYE+TGDPLY
Sbjct: 316 HLVLAHLFDKPCFLGLLAMQANDIANFHANTHIPVVVGSQMRYEITGDPLY 366

Query: 122  181
           
Sbjct: 376  366

Query: 182  241
           
Sbjct: 436  366

Query: 242  301
           
Sbjct: 496  366

Query: 302  335
           
Sbjct: 556  366

The following BLAST results are available for this feature:

BLAST of CU118686 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0R0HGV8_SOYBN	1.7e-50	85.59	Uncharacterized protein OS=Glycine max GN=GLYMA_11G131700 PE=4 SV=1	[more]
A0A0B2QNZ2_GLYSO	1.7e-50	85.59	Uncharacterized protein OS=Glycine soja GN=glysoja_008801 PE=4 SV=1	[more]
I1LJU3_SOYBN	1.7e-50	85.59	Uncharacterized protein OS=Glycine max GN=GLYMA_11G131700 PE=4 SV=2	[more]
K7LPJ3_SOYBN	1.7e-50	85.59	Uncharacterized protein OS=Glycine max GN=GLYMA_11G131700 PE=4 SV=1	[more]
A0A0V0IWU4_SOLCH	3.0e-50	84.55	Putative proline--tRNA ligase-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CU118686 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778693146\|ref\|XP_011653585.1\|	4.3e-58	100.00	PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus]	[more]
gi\|659097647\|ref\|XP_008449737.1\|	5.6e-58	99.10	PREDICTED: uncharacterized protein LOC103491528 [Cucumis melo]	[more]
gi\|657984854\|ref\|XP_008384527.1\|	2.3e-51	87.39	PREDICTED: uncharacterized protein LOC103447130 isoform X1 [Malus domestica]	[more]
gi\|657984856\|ref\|XP_008384528.1\|	2.3e-51	87.39	PREDICTED: uncharacterized protein LOC103447130 isoform X2 [Malus domestica]	[more]
gi\|947080898\|gb\|KRH29687.1\|	1.1e-50	85.59	hypothetical protein GLYMA_11G131700 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR012878	Glyco_hydro_127

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G290750	Csa4G290750	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0070628	G0070628	EST
H0047429	H0047429	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012878	Beta-L-arabinofuranosidase, GH127	PFAM	PF07944	Glyco_hydro_127	coord: 3..112 score: 6.4
None	No IPR available	PANTHER	PTHR31151	FAMILY NOT NAMED	coord: 3..112 score: 1.3
None	No IPR available	PANTHER	PTHR31151:SF3	SUBFAMILY NOT NAMED	coord: 3..112 score: 1.3