CU118262 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118262
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Hexosyltransferase
Location	Chr1 : 10984309 .. 10984794 (+)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCAATTTAGAGACTTACCATTCCCTCCTCTCCACTCTCAACATAACCCCTCCCACCCCCTTCGCCGAGCAGGACTTTTTGAACATGTTCTTCAAAGACAAGTACAAGCCAATTCCACCTGTCTACAATCTGGTGATGGCAATGCTATGGCGCCACCCAGAAAACATAGAGCTCCACAAAGTCAAAGTGGTTCACTATTGCGCTGCCGGTTCAAAGCCATGGAGGTACACAGGCAAGGAGGAAGAACATGGACCGGGAAGACGTTAAG

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	1

Homology

[Close]

BLAST of CU118262 vs. Swiss-Prot
Match: GOLS1_ARATH (Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-35
Identity = 68/79 (86.08%), Postives = 69/79 (87.34%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           NLETY  LL TL ITPPTPFAEQDFLNM+FK  YKPIP VYNLV+AMLWRHPEN+EL KV
Sbjct: 202 NLETYEDLLRTLKITPPTPFAEQDFLNMYFKKIYKPIPLVYNLVLAMLWRHPENVELGKV 261

Query: 63  KVVHYCAAGSKPWRYTGKE 122
           KVVHYCAAGSKPWRYTGKE
Sbjct: 262 KVVHYCAAGSKPWRYTGKE 280

Query: 123  182
           
Sbjct: 322  280

Query: 183  240
           
Sbjct: 382  280

[Close]

BLAST of CU118262 vs. Swiss-Prot
Match: GOLS2_ARATH (Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.9e-35
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           NL TYH+LL T+ I PPT FAEQDFLNM+FKD YKPIPPVYNLV+AMLWRHPENIEL +V
Sbjct: 194 NLSTYHNLLETVKIVPPTLFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPENIELDQV 253

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAG+KPWR+TG+EE
Sbjct: 254 KVVHYCAAGAKPWRFTGEEE 273

Query: 123  182
           
Sbjct: 314  273

Query: 183  242
           
Sbjct: 374  273

[Close]

BLAST of CU118262 vs. Swiss-Prot
Match: GOLS2_SOLLC (Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-34
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +L TY  LL TL +TPPTPFAEQDFLNM+F+D YKPIP  YNLV+AMLWRHPEN++L KV
Sbjct: 195 SLSTYDDLLKTLKVTPPTPFAEQDFLNMYFRDVYKPIPNDYNLVLAMLWRHPENVDLEKV 254

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 255 KVVHYCAAGSKPWRYTGKEE 274

Query: 123  182
           
Sbjct: 315  274

Query: 183  242
           
Sbjct: 375  274

[Close]

BLAST of CU118262 vs. Swiss-Prot
Match: GOLS2_AJURE (Galactinol synthase 2 (Fragment) OS=Ajuga reptans GN=GOLS2 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.8e-34
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +L TYH LL TL ITPPTPFAEQDFLNMF +D Y+PIP VYNLV+AMLWRHPEN+ L  V
Sbjct: 155 SLPTYHDLLHTLKITPPTPFAEQDFLNMFLRDVYRPIPNVYNLVLAMLWRHPENVNLEAV 214

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTG+EE
Sbjct: 215 KVVHYCAAGSKPWRYTGEEE 234

Query: 123  182
           
Sbjct: 275  234

Query: 183  242
           
Sbjct: 335  234

[Close]

BLAST of CU118262 vs. Swiss-Prot
Match: GOLS3_ARATH (Galactinol synthase 3 OS=Arabidopsis thaliana GN=GOLS3 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.8e-34
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +L TY++LL TL + PPTPFAEQDFLNM+FKD YKPIPPVYNLV+AMLWRHPENIEL++ 
Sbjct: 188 SLPTYYNLLETLKVVPPTPFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPENIELNEA 247

Query: 63  KVVHYCAAGSKPWRYTGKE 122
           KVVHYCAAG+KPWR+TG+E
Sbjct: 248 KVVHYCAAGAKPWRFTGQE 266

Query: 123  182
           
Sbjct: 308  266

Query: 183  240
           
Sbjct: 368  266

[Close]

BLAST of CU118262 vs. TrEMBL
Match: A0A0A0LT16_CUCSA (Hexosyltransferase OS=Cucumis sativus GN=Csa_1G181330 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV
Sbjct: 185 NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 244

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 245 KVVHYCAAGSKPWRYTGKEE 264

Query: 123  182
           
Sbjct: 305  264

Query: 183  242
           
Sbjct: 365  264

[Close]

BLAST of CU118262 vs. TrEMBL
Match: G7KTP3_MEDTR (Hexosyltransferase OS=Medicago truncatula GN=MTR_7g109920 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +++TYH LL TL +TPPTPFAEQDFLNM+FKD YKPIP VYNLV+AMLWRHPEN+ELHKV
Sbjct: 196 SIDTYHDLLKTLKVTPPTPFAEQDFLNMYFKDIYKPIPFVYNLVLAMLWRHPENVELHKV 255

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 256 KVVHYCAAGSKPWRYTGKEE 275

Query: 123  182
           
Sbjct: 316  275

Query: 183  242
           
Sbjct: 376  275

[Close]

BLAST of CU118262 vs. TrEMBL
Match: U3PYH4_9FABA (Hexosyltransferase OS=Vicia hirsuta GN=GolS1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.2e-35
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           ++ETYH LL T  +TPPTPFAEQDFLNM+FKD YKPIP VYNLV+AMLWRHPEN+E+HKV
Sbjct: 192 SIETYHDLLKTCQVTPPTPFAEQDFLNMYFKDIYKPIPLVYNLVLAMLWRHPENVEVHKV 251

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 252 KVVHYCAAGSKPWRYTGKEE 271

Query: 123  182
           
Sbjct: 312  271

Query: 183  242
           
Sbjct: 372  271

[Close]

BLAST of CU118262 vs. TrEMBL
Match: A0A068V3M2_COFCA (Hexosyltransferase OS=Coffea canephora GN=GSCOC_T00042860001 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-34
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +L TY  LLSTL ITPPTPFAEQDFLNMFF+D Y+PIPP+YNLV+AMLWRHPEN+EL KV
Sbjct: 193 SLPTYDELLSTLKITPPTPFAEQDFLNMFFRDVYRPIPPIYNLVLAMLWRHPENVELEKV 252

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKE+
Sbjct: 253 KVVHYCAAGSKPWRYTGKED 272

Query: 123  182
           
Sbjct: 313  272

Query: 183  242
           
Sbjct: 373  272

[Close]

BLAST of CU118262 vs. TrEMBL
Match: W9QW76_9ROSA (Hexosyltransferase OS=Morus notabilis GN=L484_018780 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-34
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +L TYH LL+T+ ITPPTPFAEQDFLNM+F+D YKPIP VYNLV+AMLWRHPEN+EL KV
Sbjct: 196 SLSTYHDLLNTVKITPPTPFAEQDFLNMYFRDMYKPIPLVYNLVLAMLWRHPENVELEKV 255

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 256 KVVHYCAAGSKPWRYTGKEE 275

Query: 123  182
           
Sbjct: 316  275

Query: 183  242
           
Sbjct: 376  275

[Close]

BLAST of CU118262 vs. NCBI nr
Match: gi|449443518|ref|XP_004139524.1| (PREDICTED: galactinol synthase 2-like [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.8e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV
Sbjct: 185 NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 244

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 245 KVVHYCAAGSKPWRYTGKEE 264

Query: 123  182
           
Sbjct: 305  264

Query: 183  242
           
Sbjct: 365  264

[Close]

BLAST of CU118262 vs. NCBI nr
Match: gi|659127227|ref|XP_008463593.1| (PREDICTED: galactinol synthase 2-like [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 3.7e-41
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           NLETYHSLLSTLN+TPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV
Sbjct: 184 NLETYHSLLSTLNVTPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 243

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 244 KVVHYCAAGSKPWRYTGKEE 263

Query: 123  182
           
Sbjct: 304  263

Query: 183  242
           
Sbjct: 364  263

[Close]

BLAST of CU118262 vs. NCBI nr
Match: gi|357511433|ref|XP_003626005.1| (galactinol synthase [Medicago truncatula])

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-35
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +++TYH LL TL +TPPTPFAEQDFLNM+FKD YKPIP VYNLV+AMLWRHPEN+ELHKV
Sbjct: 196 SIDTYHDLLKTLKVTPPTPFAEQDFLNMYFKDIYKPIPFVYNLVLAMLWRHPENVELHKV 255

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 256 KVVHYCAAGSKPWRYTGKEE 275

Query: 123  182
           
Sbjct: 316  275

Query: 183  242
           
Sbjct: 376  275

[Close]

BLAST of CU118262 vs. NCBI nr
Match: gi|545698810|gb|AGW51290.1| (putative galactinol synthase [Vicia hirsuta])

HSP 1 Score: 154.8 bits (390), Expect = 6.8e-35
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           ++ETYH LL T  +TPPTPFAEQDFLNM+FKD YKPIP VYNLV+AMLWRHPEN+E+HKV
Sbjct: 192 SIETYHDLLKTCQVTPPTPFAEQDFLNMYFKDIYKPIPLVYNLVLAMLWRHPENVEVHKV 251

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTGKEE
Sbjct: 252 KVVHYCAAGSKPWRYTGKEE 271

Query: 123  182
           
Sbjct: 312  271

Query: 183  242
           
Sbjct: 372  271

[Close]

BLAST of CU118262 vs. NCBI nr
Match: gi|729353167|ref|XP_010544149.1| (PREDICTED: galactinol synthase 2-like [Tarenaya hassleriana])

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-34
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 3


Query: 3   NLETYHSLLSTLNITPPTPFAEQDFLNMFFKDKYKPIPPVYNLVMAMLWRHPENIELHKV 62
           +L TYH LL TL + PPTPFAEQDFLNM+FKD YKPIPPVYNLV+AMLWRHPENIEL KV
Sbjct: 184 SLSTYHILLETLKVVPPTPFAEQDFLNMYFKDIYKPIPPVYNLVLAMLWRHPENIELDKV 243

Query: 63  KVVHYCAAGSKPWRYTGKEE 122
           KVVHYCAAGSKPWRYTG+EE
Sbjct: 244 KVVHYCAAGSKPWRYTGEEE 263

Query: 123  182
           
Sbjct: 304  263

Query: 183  242
           
Sbjct: 364  263

The following BLAST results are available for this feature:

BLAST of CU118262 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GOLS1_ARATH	3.0e-35	86.08	Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1	[more]
GOLS2_ARATH	8.9e-35	81.25	Galactinol synthase 2 OS=Arabidopsis thaliana GN=GOLS2 PE=1 SV=1	[more]
GOLS2_SOLLC	2.6e-34	80.00	Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1	[more]
GOLS2_AJURE	5.8e-34	80.00	Galactinol synthase 2 (Fragment) OS=Ajuga reptans GN=GOLS2 PE=1 SV=1	[more]
GOLS3_ARATH	5.8e-34	78.48	Galactinol synthase 3 OS=Arabidopsis thaliana GN=GOLS3 PE=1 SV=1	[more]

BLAST of CU118262 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT16_CUCSA	2.6e-41	100.00	Hexosyltransferase OS=Cucumis sativus GN=Csa_1G181330 PE=3 SV=1	[more]
G7KTP3_MEDTR	2.1e-35	85.00	Hexosyltransferase OS=Medicago truncatula GN=MTR_7g109920 PE=3 SV=1	[more]
U3PYH4_9FABA	6.2e-35	83.75	Hexosyltransferase OS=Vicia hirsuta GN=GolS1 PE=3 SV=1	[more]
A0A068V3M2_COFCA	1.8e-34	83.75	Hexosyltransferase OS=Coffea canephora GN=GSCOC_T00042860001 PE=3 SV=1	[more]
W9QW76_9ROSA	2.4e-34	83.75	Hexosyltransferase OS=Morus notabilis GN=L484_018780 PE=3 SV=1	[more]

BLAST of CU118262 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443518\|ref\|XP_004139524.1\|	2.8e-41	100.00	PREDICTED: galactinol synthase 2-like [Cucumis sativus]	[more]
gi\|659127227\|ref\|XP_008463593.1\|	3.7e-41	98.75	PREDICTED: galactinol synthase 2-like [Cucumis melo]	[more]
gi\|357511433\|ref\|XP_003626005.1\|	2.3e-35	85.00	galactinol synthase [Medicago truncatula]	[more]
gi\|545698810\|gb\|AGW51290.1\|	6.8e-35	83.75	putative galactinol synthase [Vicia hirsuta]	[more]
gi\|729353167\|ref\|XP_010544149.1\|	2.0e-34	85.00	PREDICTED: galactinol synthase 2-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002495	Glyco_trans_8

Vocabulary: **Molecular Function**
Term	Definition
GO:0016757	transferase activity, transferring glycosyl groups

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G181330	Csa1G181330	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LY2V9	FKNP3UI02LY2V9	EST
G0100856	G0100856	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002495	Glycosyl transferase, family 8	PFAM	PF01501	Glyco_transf_8	coord: 4..77 score: 6.0
None	No IPR available	PANTHER	PTHR11183	GLYCOGENIN	coord: 2..89 score: 9.4
None	No IPR available	PANTHER	PTHR11183:SF59	GALACTINOL SYNTHASE 2-RELATED	coord: 2..89 score: 9.4