CU118246 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118246
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Major facilitator superfamily transporter
Location	Chr4 : 6394053 .. 6394308 (+)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTGTTGTTGGTGGTCTTATTCCCTTTGTCCTAAACTACCACCGCACTACTGCTTCTTCCGTCAATGATGGTACCTATATTGGTTTCATGTGTTTCATGTCTATTGGGGCTGTCACTTCTCTTGCCATTTTGCCCCCCAGTCGTGTGGTTCGCGATGATGGTTCGAGATGCACCAACATCAAGTACTCCAGCGTTTCAGTGGAGTTTGTGGAGATTCTCAAGTTGTTCCTTAATTGGAAGATGTTGTTGATTGTTC

Library


Library category	ESTs
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU118246 vs. Swiss-Prot
Match: UN931_ARATH (UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-23
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           V+GGLIPF+LNY R++A+SVND TYI FMCFM  G + S  ILP + V+R+DGSRC+ +K
Sbjct: 171 VIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVK 230

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YS  S E   +L+LFL+ KMLLIV
Sbjct: 231 YSRPSTEAAAVLRLFLDRKMLLIV 254

Query: 123  182
           
Sbjct: 291  254

Query: 183  242
           
Sbjct: 351  254

Query: 243  255
           
Sbjct: 411  254

[Close]

BLAST of CU118246 vs. Swiss-Prot
Match: UN932_ARATH (UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-23
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           V+GGLIPF+LNY R++A+SVND TYI FMCFM  G + S  ILP + V+R+DGSRC+ +K
Sbjct: 171 VIGGLIPFILNYQRSSAASVNDSTYIAFMCFMFAGVLLSFGILPATSVIRNDGSRCSAVK 230

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YS  S E   +L+LFL+ KMLLIV
Sbjct: 231 YSRPSTEAAAVLRLFLDRKMLLIV 254

Query: 123  182
           
Sbjct: 291  254

Query: 183  242
           
Sbjct: 351  254

Query: 243  255
           
Sbjct: 411  254

[Close]

BLAST of CU118246 vs. TrEMBL
Match: A0A0A0KVM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097670 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK
Sbjct: 164 VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 223

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVSVEFVEILKLFLNWKMLLIV
Sbjct: 224 YSSVSVEFVEILKLFLNWKMLLIV 247

Query: 123  182
           
Sbjct: 284  247

Query: 183  242
           
Sbjct: 344  247

Query: 243  255
           
Sbjct: 404  247

[Close]

BLAST of CU118246 vs. TrEMBL
Match: A0A0A0L0K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097680 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-37
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           VVGGLIPF+LNYHRTTASSVNDGTYIGFMCFMSIGA+ SLAILPPSRVVRDDGSRCTNI 
Sbjct: 164 VVGGLIPFILNYHRTTASSVNDGTYIGFMCFMSIGALISLAILPPSRVVRDDGSRCTNIT 223

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVSVEFVEILKLFLNWKMLLIV
Sbjct: 224 YSSVSVEFVEILKLFLNWKMLLIV 247

Query: 123  182
           
Sbjct: 284  247

Query: 183  242
           
Sbjct: 344  247

Query: 243  255
           
Sbjct: 404  247

[Close]

BLAST of CU118246 vs. TrEMBL
Match: A0A061EUK3_THECC (Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_023861 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-31
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           V+GGLIPF+LNYHR  A+SVND TYIGFMCFMS G + S AILPP++VVRDDG+RCTN+K
Sbjct: 166 VIGGLIPFILNYHRNEATSVNDATYIGFMCFMSAGTLLSFAILPPNKVVRDDGTRCTNVK 225

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVS E VEILKLF NWKMLLIV
Sbjct: 226 YSSVSTEAVEILKLFFNWKMLLIV 249

Query: 123  182
           
Sbjct: 286  249

Query: 183  242
           
Sbjct: 346  249

Query: 243  255
           
Sbjct: 406  249

[Close]

BLAST of CU118246 vs. TrEMBL
Match: A0A058ZYV6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00457 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.0e-31
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           V+GGLIPF LNY R  A+SVNDGTYIGFMCFM++GA+ S AILPPS+V+RDDGS CTN+K
Sbjct: 123 VIGGLIPFALNYSRNEAASVNDGTYIGFMCFMTVGALLSFAILPPSKVIRDDGSTCTNVK 182

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVS E  EILKLFLNWKMLLIV
Sbjct: 183 YSSVSTEAAEILKLFLNWKMLLIV 206

Query: 123  182
           
Sbjct: 243  206

Query: 183  242
           
Sbjct: 303  206

Query: 243  255
           
Sbjct: 363  206

[Close]

BLAST of CU118246 vs. TrEMBL
Match: E0CVF1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00690 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.8e-31
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           VVGGLIPF+LNY+R+ A+SVNDGTYIGFMCFMS+G V +LAIL PSRVVRDDGS CTNIK
Sbjct: 163 VVGGLIPFILNYNRSEAASVNDGTYIGFMCFMSVGTVLTLAILHPSRVVRDDGSHCTNIK 222

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YS VS E VEILKLF NWKMLL+V
Sbjct: 223 YSDVSTEAVEILKLFRNWKMLLMV 246

Query: 123  182
           
Sbjct: 283  246

Query: 183  242
           
Sbjct: 343  246

Query: 243  255
           
Sbjct: 403  246

[Close]

BLAST of CU118246 vs. NCBI nr
Match: gi|778691829|ref|XP_011653359.1| (PREDICTED: UNC93-like protein 1 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK
Sbjct: 164 VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 223

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVSVEFVEILKLFLNWKMLLIV
Sbjct: 224 YSSVSVEFVEILKLFLNWKMLLIV 247

Query: 123  182
           
Sbjct: 284  247

Query: 183  242
           
Sbjct: 344  247

Query: 243  255
           
Sbjct: 404  247

[Close]

BLAST of CU118246 vs. NCBI nr
Match: gi|659111167|ref|XP_008455613.1| (PREDICTED: UNC93-like protein 1 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           VVGGLIPF+LNYHRTTASSVNDGTYIGFMCFMSIGA+TSLAILPPSRVVRDDGSRCTNI 
Sbjct: 164 VVGGLIPFILNYHRTTASSVNDGTYIGFMCFMSIGALTSLAILPPSRVVRDDGSRCTNIM 223

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVSVEFVEILKLFLNWKMLLIV
Sbjct: 224 YSSVSVEFVEILKLFLNWKMLLIV 247

Query: 123  182
           
Sbjct: 284  247

Query: 183  242
           
Sbjct: 344  247

Query: 243  255
           
Sbjct: 404  247

[Close]

BLAST of CU118246 vs. NCBI nr
Match: gi|778691832|ref|XP_011653360.1| (PREDICTED: UNC93-like protein 1 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 9.1e-37
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           VVGGLIPF+LNYHRTTASSVNDGTYIGFMCFMSIGA+ SLAILPPSRVVRDDGSRCTNI 
Sbjct: 164 VVGGLIPFILNYHRTTASSVNDGTYIGFMCFMSIGALISLAILPPSRVVRDDGSRCTNIT 223

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVSVEFVEILKLFLNWKMLLIV
Sbjct: 224 YSSVSVEFVEILKLFLNWKMLLIV 247

Query: 123  182
           
Sbjct: 284  247

Query: 183  242
           
Sbjct: 344  247

Query: 243  255
           
Sbjct: 404  247

[Close]

BLAST of CU118246 vs. NCBI nr
Match: gi|659111165|ref|XP_008455612.1| (PREDICTED: UNC93-like protein 1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           V+GGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIG +TSLAILPPSRVVRDDGS CTNIK
Sbjct: 164 VIGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGTLTSLAILPPSRVVRDDGSPCTNIK 223

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YS+VSVEFVEILKLFLNWKMLLIV
Sbjct: 224 YSNVSVEFVEILKLFLNWKMLLIV 247

Query: 123  182
           
Sbjct: 284  247

Query: 183  242
           
Sbjct: 344  247

Query: 243  255
           
Sbjct: 404  247

[Close]

BLAST of CU118246 vs. NCBI nr
Match: gi|590633940|ref|XP_007028238.1| (Major facilitator superfamily protein [Theobroma cacao])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 66/84 (78.57%), Postives = 74/84 (88.10%), Query Frame = 3


Query: 3   VVGGLIPFVLNYHRTTASSVNDGTYIGFMCFMSIGAVTSLAILPPSRVVRDDGSRCTNIK 62
           V+GGLIPF+LNYHR  A+SVND TYIGFMCFMS G + S AILPP++VVRDDG+RCTN+K
Sbjct: 166 VIGGLIPFILNYHRNEATSVNDATYIGFMCFMSAGTLLSFAILPPNKVVRDDGTRCTNVK 225

Query: 63  YSSVSVEFVEILKLFLNWKMLLIV 122
           YSSVS E VEILKLF NWKMLLIV
Sbjct: 226 YSSVSTEAVEILKLFFNWKMLLIV 249

Query: 123  182
           
Sbjct: 286  249

Query: 183  242
           
Sbjct: 346  249

Query: 243  255
           
Sbjct: 406  249

The following BLAST results are available for this feature:

BLAST of CU118246 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UN931_ARATH	2.6e-23	60.71	UNC93-like protein 1 OS=Arabidopsis thaliana GN=At1g18000 PE=2 SV=2	[more]
UN932_ARATH	2.6e-23	60.71	UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2	[more]

BLAST of CU118246 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVM5_CUCSA	1.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097670 PE=4 SV=1	[more]
A0A0A0L0K7_CUCSA	1.3e-37	95.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097680 PE=4 SV=1	[more]
A0A061EUK3_THECC	2.3e-31	78.57	Major facilitator superfamily protein OS=Theobroma cacao GN=TCM_023861 PE=4 SV=1	[more]
A0A058ZYV6_EUCGR	4.0e-31	78.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00457 PE=4 SV=1	[more]
E0CVF1_VITVI	6.8e-31	80.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00690 PE=4 SV=...	[more]

BLAST of CU118246 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691829\|ref\|XP_011653359.1\|	1.3e-38	100.00	PREDICTED: UNC93-like protein 1 [Cucumis sativus]	[more]
gi\|659111167\|ref\|XP_008455613.1\|	1.8e-37	96.43	PREDICTED: UNC93-like protein 1 [Cucumis melo]	[more]
gi\|778691832\|ref\|XP_011653360.1\|	9.1e-37	95.24	PREDICTED: UNC93-like protein 1 [Cucumis sativus]	[more]
gi\|659111165\|ref\|XP_008455612.1\|	1.5e-36	94.05	PREDICTED: UNC93-like protein 1 [Cucumis melo]	[more]
gi\|590633940\|ref\|XP_007028238.1\|	1.7e-30	78.57	Major facilitator superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G097670	Csa4G097670	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0001623	H0001623	EST
H0007740	H0007740	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23294	ET TRANSLATION PRODUCT-RELATED	coord: 2..85 score: 1.2
None	No IPR available	PANTHER	PTHR23294:SF25	UNC93-LIKE PROTEIN 1-RELATED	coord: 2..85 score: 1.2