CU118224 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU118224
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 10663939 .. 10664192 (+)
Sequence length254
The following sequences are available for this feature:

transcribed_cluster sequence

GTCCACACCAAACAAATTGCTCCCAAACCCATGTAACATTCTCTGTGGAGGCTCCACACTGATACTCTGAACATGCTGTCCCCTCGAATCTCTCTTCCACAGAGTTCGTTTCTTTGGTCCTTAGTAGCGGTCGAACGTCAATCAGTGAGAGTTTCCCATCACTTGAAGCTGAAACCAACCATGGAAACTCAAATGCTAGAGAATAAACTGGTCCTGAATGAGGAATCCAAGATCCAACCAGTTGAGCACTTGTA
BLAST of CU118224 vs. Swiss-Prot
Match: FBW3_ARATH (F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-13
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = -2

Query: 116 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRT 175
           TS  L+  W+PH+ PVYSL+FEFPWLVSAS DGKL+LIDVR LL+T
Sbjct: 372 TSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLKT 417

Query: 176 235
           
Sbjct: 432 417

Query: 236 254
           
Sbjct: 492 417


HSP 2 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 20/31 (64.52%), Postives = 22/31 (70.97%), Query Frame = -3

Query: 1   RDSRGQHVQSISVEPPQRMLHGFGSNLFGVD 60
           R +  + + S +VEPPQRMLHGFGSNLF VD
Sbjct: 419 RCAYSKRISSSTVEPPQRMLHGFGSNLFSVD 449

Query: 61  94
           
Sbjct: 479 449

BLAST of CU118224 vs. TrEMBL
Match: A0A0A0L0C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2

Query: 110 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKE 169
           TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTK+
Sbjct: 377 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKK 424

Query: 170 229
           
Sbjct: 437 424

Query: 230 254
           
Sbjct: 497 424

BLAST of CU118224 vs. TrEMBL
Match: A0A0A0L0C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = -3

Query: 1   KKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVD 60
           KKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVD
Sbjct: 423 KKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVD 460

Query: 61  115
           
Sbjct: 483 460


HSP 2 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = -2

Query: 11  SAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNSV--------- 70
           S +   +W+PHSGPVYSLAFEFPWLVSASSDGK+SLIDVR LL+TK+ +S          
Sbjct: 379 SVRKTATWVPHSGPVYSLAFEFPWLVSASSDGKISLIDVRELLKTKKHSSCSSSKNVEAP 438

Query: 71  EERFEGTACSEYQCGASTENVTWVWEQFV 130
           +    G  C+ +  G   + +    E+ V
Sbjct: 439 QRMLHGFKCNLFSVGIGFDRIVCAGEEGV 467

Query: 131 190
           
Sbjct: 499 467

Query: 191 250
           
Sbjct: 559 467

BLAST of CU118224 vs. TrEMBL
Match: A0A059AA99_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00620 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-13
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = -2

Query: 92  VGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNSVEE 151
           V SWIPHSGPVY+LAFEFPWLVSAS+DG+L+L+DVR LLRTK++ S ++
Sbjct: 404 VASWIPHSGPVYALAFEFPWLVSASADGQLALVDVRKLLRTKKSTSAKK 452

Query: 152 211
           
Sbjct: 464 452

Query: 212 239
           
Sbjct: 524 452

BLAST of CU118224 vs. TrEMBL
Match: A0A059AA99_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00620 PE=4 SV=1)

HSP 1 Score: 38.9 bits (89), Expect = 3.6e+00
Identity = 20/38 (52.63%), Postives = 23/38 (60.53%), Query Frame = -3

Query: 1   KKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVD 60
           KK T  K+  +   V    VEPPQRMLH F S+LF VD
Sbjct: 445 KKSTSAKKILKTGSVDRTKVEPPQRMLHWFSSDLFSVD 482

Query: 61  115
           
Sbjct: 505 482


HSP 2 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = -2

Query: 101 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNS 160
           T+A  V +W+PHSG VYSLAFEFPWLVSAS+DGKL+LIDVR LLRT++ +S
Sbjct: 395 TNALFVATWVPHSGCVYSLAFEFPWLVSASADGKLALIDVRKLLRTRKHDS 445

Query: 161 220
           
Sbjct: 455 445

Query: 221 254
           
Sbjct: 515 445

BLAST of CU118224 vs. TrEMBL
Match: M5WAC3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003536mg PE=4 SV=1)

HSP 1 Score: 38.9 bits (89), Expect = 3.6e+00
Identity = 20/37 (54.05%), Postives = 23/37 (62.16%), Query Frame = -3

Query: 4   KKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGV 63
           +K    KR S  + V   S+EPPQRMLHGFG NL  V
Sbjct: 441 RKHDSGKRFSCVKLVDRSSMEPPQRMLHGFGKNLMSV 477

Query: 64  115
           
Sbjct: 501 477


HSP 2 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = -2

Query: 101 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNS 160
           T    V +WIPHSGPVYSLAFEFPWLVSASSDGK+SLIDVR LL+ ++  S
Sbjct: 386 TDTLKVATWIPHSGPVYSLAFEFPWLVSASSDGKMSLIDVRALLKARKDRS 436

Query: 161 220
           
Sbjct: 446 436

Query: 221 254
           
Sbjct: 506 436

BLAST of CU118224 vs. NCBI nr
Match: gi|778692827|ref|XP_011653530.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2

Query: 110 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKE 169
           TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTK+
Sbjct: 377 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKK 424

Query: 170 229
           
Sbjct: 437 424

Query: 230 254
           
Sbjct: 497 424

BLAST of CU118224 vs. NCBI nr
Match: gi|659097885|ref|XP_008449867.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 3.2e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -2

Query: 110 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKE 169
           TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTK+
Sbjct: 377 TSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKK 424

Query: 170 229
           
Sbjct: 437 424

Query: 230 254
           
Sbjct: 497 424

BLAST of CU118224 vs. NCBI nr
Match: gi|848876011|ref|XP_012838473.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Erythranthe guttata])

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-14
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = -2

Query: 11  SAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNSV--------- 70
           S +   +W+PHSGPVYSLAFEFPWLVSASSDGK+SLIDVR LL+TK+ +S          
Sbjct: 379 SVRKTATWVPHSGPVYSLAFEFPWLVSASSDGKISLIDVRELLKTKKHSSCSSSKNVEAP 438

Query: 71  EERFEGTACSEYQCGASTENVTWVWEQFV 130
           +    G  C+ +  G   + +    E+ V
Sbjct: 439 QRMLHGFKCNLFSVGIGFDRIVCAGEEGV 467

Query: 131 190
           
Sbjct: 499 467

Query: 191 250
           
Sbjct: 559 467

BLAST of CU118224 vs. NCBI nr
Match: gi|747067547|ref|XP_011080500.1| (PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Sesamum indicum])

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-14
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = -2

Query: 80  VGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNSVEERFEG 139
           + +WIPH+GPVYSLAFEFPWLVSASSDGK+SLIDVR LL+T   +S +  F+G
Sbjct: 383 IATWIPHTGPVYSLAFEFPWLVSASSDGKISLIDVRKLLKTSRHSSTQNTFKG 435

Query: 140 199
           
Sbjct: 443 435

Query: 200 239
           
Sbjct: 503 435

BLAST of CU118224 vs. NCBI nr
Match: gi|698558103|ref|XP_009771206.1| (PREDICTED: uncharacterized protein LOC104221776 [Nicotiana sylvestris])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = -2

Query: 71  VGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKETNSVEERFEGTAC 130
           V +WIPHSG VYSLAFEFPWLVSASSDGKLSLIDVR LLRTK++  +E+ ++   C
Sbjct: 388 VATWIPHSGAVYSLAFEFPWLVSASSDGKLSLIDVRKLLRTKQSYVMEKIWKVDNC 443

Query: 131 190
           
Sbjct: 448 443

Query: 191 239
           
Sbjct: 508 443

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FBW3_ARATH4.1e-1371.74F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g2... [more]
Match NameE-valueIdentityDescription
A0A0A0L0C6_CUCSA3.8e-1897.92Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1[more]
A0A0A0L0C6_CUCSA1.7e-13100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269200 PE=4 SV=1[more]
A0A059AA99_EUCGR3.7e-1373.47Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00620 PE=4 SV=1[more]
A0A059AA99_EUCGR3.6e+0052.63Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00620 PE=4 SV=1[more]
M5WAC3_PRUPE3.6e+0054.05Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003536mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778692827|ref|XP_011653530.1|3.2e-1897.92PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis sativus][more]
gi|659097885|ref|XP_008449867.1|3.2e-1897.92PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Cucumis melo][more]
gi|848876011|ref|XP_012838473.1|8.2e-1447.19PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Erythranthe guttata][more]
gi|747067547|ref|XP_011080500.1|8.2e-1469.81PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Sesamum indicum... [more]
gi|698558103|ref|XP_009771206.1|1.8e-1371.43PREDICTED: uncharacterized protein LOC104221776 [Nicotiana sylvestris][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G269200Csa4G269200gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0165139H0165139EST
H0183835H0183835EST