CU117907 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU117907
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Basic helix-loop-helix regulatory family protein
Location	Chr6 : 355235 .. 355477 (+)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACTATGACTATGAGAAGATTGAAGGCAGCTTAAAACCTTCAACGAACAAGAGAAAAGCCTGTGAAATGGTATGAAACTGACCTGAAGCTGAAGAATGATTTTCCCAAAGTTGGACGTAAGCTAGATGTGAAAGTCAGCATGGAAGAGCATGAAGTTCTCGTTGACATGCACTGTCCATATCGAGAATATATATTGGTCGATGTCATGGATGCTTTGAACGATTTGCAACTGGATGCCTACTC

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU117907 vs. TrEMBL
Match: A0A0A0KCZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003480 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-24
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  +  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ
Sbjct: 455 KRKACEMDETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 514

Query: 110 LDAY 169
           LDAY
Sbjct: 515 LDAY 518

Query: 170  229
           
Sbjct: 575  518

Query: 230  242
           
Sbjct: 635  518

[Close]

BLAST of CU117907 vs. TrEMBL
Match: A0A0A0KCZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003480 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-04
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1   NYDYEKIEGSLKPSTNKRKACEM 60
           NYDYEKIEGSLKPSTNKRKACEM
Sbjct: 439 NYDYEKIEGSLKPSTNKRKACEM 461

Query: 61   70
           
Sbjct: 499  461

HSP 2 Score: 118.2 bits (295), Expect = 4.5e-24
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  +  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ
Sbjct: 547 KRKACEMDETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 606

Query: 110 LDAY 169
           LDAY
Sbjct: 607 LDAY 610

Query: 170  229
           
Sbjct: 667  610

Query: 230  242
           
Sbjct: 727  610

[Close]

BLAST of CU117907 vs. TrEMBL
Match: I6N8K6_CUCSA (GL3 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.0e-04
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1


Query: 1   NYDYEKIEGSLKPSTNKRKACEM 60
           NYDYEKIEGSLKPSTNKRKACEM
Sbjct: 531 NYDYEKIEGSLKPSTNKRKACEM 553

Query: 61   70
           
Sbjct: 591  553

HSP 2 Score: 72.0 bits (175), Expect = 3.7e-10
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  ++ ETD +L    P+    LDVKVS++E EVL++M CPYREY+L+DVMDA+N+L 
Sbjct: 552 KRKACEFDETDPELNRVVPEDSLPLDVKVSIKEQEVLIEMRCPYREYVLLDVMDAINNLH 611

Query: 110 LDAY 169
           L+A+
Sbjct: 612 LEAH 615

Query: 170  229
           
Sbjct: 672  615

Query: 230  242
           
Sbjct: 732  615

[Close]

BLAST of CU117907 vs. TrEMBL
Match: A0A0A7W5E0_PRUAV (BHLH33 OS=Prunus avium GN=bHLH33 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-09
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2


Query: 74  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQLDAY 133
           ETD  L    P+    LDVKV ++E EVL++M CPYREYIL+D+MDA+N+L LDA+
Sbjct: 553 ETDPDLNRLVPRESLPLDVKVILKEQEVLIEMRCPYREYILLDIMDAINNLYLDAH 608

Query: 134  193
           
Sbjct: 613  608

Query: 194  242
           
Sbjct: 673  608

[Close]

BLAST of CU117907 vs. TrEMBL
Match: M5XIR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002645mg PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-09
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2


Query: 74  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQLDAY 133
           ETD  L    P+    LDVKV ++E EVL++M CPYREYIL+D+MDA+N+L LDA+
Sbjct: 553 ETDPDLNRLVPRESLPLDVKVILKEQEVLIEMRCPYREYILLDIMDAINNLYLDAH 608

Query: 134  193
           
Sbjct: 613  608

Query: 194  242
           
Sbjct: 673  608

[Close]

BLAST of CU117907 vs. NCBI nr
Match: gi|793421610|ref|NP_001292635.1| (transcription factor EGL1 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  +  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ
Sbjct: 547 KRKACEMDETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 606

Query: 110 LDAY 169
           LDAY
Sbjct: 607 LDAY 610

Query: 170  229
           
Sbjct: 667  610

Query: 230  242
           
Sbjct: 727  610

[Close]

BLAST of CU117907 vs. NCBI nr
Match: gi|778709077|ref|XP_011656339.1| (PREDICTED: transcription factor EGL1 isoform X2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  +  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ
Sbjct: 540 KRKACEMDETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 599

Query: 110 LDAY 169
           LDAY
Sbjct: 600 LDAY 603

Query: 170  229
           
Sbjct: 660  603

Query: 230  242
           
Sbjct: 720  603

[Close]

BLAST of CU117907 vs. NCBI nr
Match: gi|700190452|gb|KGN45656.1| (hypothetical protein Csa_6G003480 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.4e-24
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  +  ETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ
Sbjct: 455 KRKACEMDETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 514

Query: 110 LDAY 169
           LDAY
Sbjct: 515 LDAY 518

Query: 170  229
           
Sbjct: 575  518

Query: 230  242
           
Sbjct: 635  518

[Close]

BLAST of CU117907 vs. NCBI nr
Match: gi|659116733|ref|XP_008458230.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor EGL1-like [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 4.6e-22
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  +  ETDLKLK+DFPKVG KLDVKVSMEEHEVL+DMHCPYREYILVDV+DALNDLQ
Sbjct: 540 KRKACEMDETDLKLKHDFPKVGHKLDVKVSMEEHEVLIDMHCPYREYILVDVVDALNDLQ 599

Query: 110 LDAY 169
           LDAY
Sbjct: 600 LDAY 603

Query: 170  229
           
Sbjct: 660  603

Query: 230  242
           
Sbjct: 720  603

[Close]

BLAST of CU117907 vs. NCBI nr
Match: gi|514482123|gb|AGO58373.1| (basic helix-loop-helix protein [Morella rubra])

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-10
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 2


Query: 50  REKPVKWYETDLKLKNDFPKVGRKLDVKVSMEEHEVLVDMHCPYREYILVDVMDALNDLQ 109
           + K  ++ ETD +L    P+    LDVKVS++E EVL++M CPYREY+L+DVMDA+N+L 
Sbjct: 552 KRKACEFDETDPELNRVVPEDSLPLDVKVSIKEQEVLIEMRCPYREYVLLDVMDAINNLH 611

Query: 110 LDAY 169
           L+A+
Sbjct: 612 LEAH 615

Query: 170  229
           
Sbjct: 672  615

Query: 230  242
           
Sbjct: 732  615

The following BLAST results are available for this feature:

BLAST of CU117907 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCZ7_CUCSA	4.5e-24	89.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003480 PE=4 SV=1	[more]
A0A0A0KCZ7_CUCSA	3.0e-04	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G003480 PE=4 SV=1	[more]
I6N8K6_CUCSA	3.0e-04	100.00	GL3 OS=Cucumis sativus PE=2 SV=1	[more]
A0A0A7W5E0_PRUAV	2.4e-09	57.14	BHLH33 OS=Prunus avium GN=bHLH33 PE=2 SV=1	[more]
M5XIR9_PRUPE	2.4e-09	57.14	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002645mg PE=4 SV=1	[more]

BLAST of CU117907 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|793421610\|ref\|NP_001292635.1\|	8.4e-24	89.06	transcription factor EGL1 [Cucumis sativus]	[more]
gi\|778709077\|ref\|XP_011656339.1\|	8.4e-24	89.06	PREDICTED: transcription factor EGL1 isoform X2 [Cucumis sativus]	[more]
gi\|700190452\|gb\|KGN45656.1\|	8.4e-24	89.06	hypothetical protein Csa_6G003480 [Cucumis sativus]	[more]
gi\|659116733\|ref\|XP_008458230.1\|	4.6e-22	82.81	PREDICTED: LOW QUALITY PROTEIN: transcription factor EGL1-like [Cucumis melo]	[more]
gi\|514482123\|gb\|AGO58373.1\|	6.9e-10	51.56	basic helix-loop-helix protein [Morella rubra]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G003480	Csa6G003480	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02OQ68A	FKNP3UI02OQ68A	EST
H0026303	H0026303	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11514	MYC	coord: 41..81 score: 4.3
None	No IPR available	PANTHER	PTHR11514:SF38	TRANSCRIPTION FACTOR MYC1	coord: 41..81 score: 4.3