CU117898 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU117898
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationChr4 : 23199839 .. 23200133 (+)
Sequence length294
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGAAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCCGCTCAATTCTTCATTTAGTCGTTAATAACTGGAACCTGGATAAAGTATAGTGTCGTCAAATCTGTATAGTGTTCATAAGGG
Library
Library categoryESTs
fruit (8DPP) library2
Homology
[Close]
BLAST of CU117898 vs. Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-18
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 2 

Query: 5   YPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIA 64
           YPGG  FDPL L+ D EAF ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL DHIA
Sbjct: 188 YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIA 247

Query: 65  DP 124
           DP
Sbjct: 248 DP 248

Query: 125  184
           
Sbjct: 308  248

Query: 185  191
           
Sbjct: 368  248

[Close]
BLAST of CU117898 vs. Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-18
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 2 

Query: 5   YPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIA 64
           YPGG  FDPL L+ D EAF ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL DH+A
Sbjct: 189 YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVA 248

Query: 65  DP 124
           DP
Sbjct: 249 DP 249

Query: 125  184
           
Sbjct: 309  249

Query: 185  191
           
Sbjct: 369  249

[Close]
BLAST of CU117898 vs. Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-18
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 2 

Query: 5   YPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIA 64
           YPGG  FDPL L+ DAEAF ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL DH+A
Sbjct: 188 YPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 247

Query: 65  DP 124
           DP
Sbjct: 248 DP 248

Query: 125  184
           
Sbjct: 308  248

Query: 185  191
           
Sbjct: 368  248

[Close]
BLAST of CU117898 vs. Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-18
Identity = 44/62 (70.97%), Postives = 48/62 (77.42%), Query Frame = 2 

Query: 5   YPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIA 64
           YPGG  FDPL L+ D EAF ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL DHIA
Sbjct: 161 YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIA 220

Query: 65  DP 124
           DP
Sbjct: 221 DP 221

Query: 125  184
           
Sbjct: 281  221

Query: 185  191
           
Sbjct: 341  221

[Close]
BLAST of CU117898 vs. Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-18
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 2 

Query: 5   YPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIA 64
           YPGG  FDPL L+ D EAF ELKVKEIKNGRLAM +  GF+ QA +TGKGP++NL DH+A
Sbjct: 189 YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVA 248

Query: 65  DP 124
           DP
Sbjct: 249 DP 249

Query: 125  184
           
Sbjct: 309  249

Query: 185  191
           
Sbjct: 369  249

[Close]
BLAST of CU117898 vs. TrEMBL
Match: A0A0A0L0U5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664570 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKDA AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI
Sbjct: 197 NYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 256

Query: 62  ADP 121
           ADP
Sbjct: 257 ADP 259

Query: 122  181
           
Sbjct: 317  259

Query: 182  191
           
Sbjct: 377  259

[Close]
BLAST of CU117898 vs. TrEMBL
Match: A0A061EWX0_THECC (Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_024723 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-25
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKD  AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLL+H+
Sbjct: 288 NYPGGVLFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLEHL 347

Query: 62  ADP 121
           +DP
Sbjct: 348 SDP 350

Query: 122  181
           
Sbjct: 408  350

Query: 182  191
           
Sbjct: 468  350

[Close]
BLAST of CU117898 vs. TrEMBL
Match: W9QWP9_9ROSA (Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_024786 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-25
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGG LFDPLNLSKD  AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGP+QNL+DH+
Sbjct: 216 NYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPIQNLIDHV 275

Query: 62  ADP 121
           +DP
Sbjct: 276 SDP 278

Query: 122  181
           
Sbjct: 336  278

Query: 182  191
           
Sbjct: 396  278

[Close]
BLAST of CU117898 vs. TrEMBL
Match: C6TAC2_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_17G262400 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGG LFDPLNLS D EAFEELKVKEIKNGRLAMVAWLGFY QAALTGKGPVQNL+DHI
Sbjct: 253 NYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHI 312

Query: 62  ADP 121
           +DP
Sbjct: 313 SDP 315

Query: 122  181
           
Sbjct: 373  315

Query: 182  191
           
Sbjct: 433  315

[Close]
BLAST of CU117898 vs. TrEMBL
Match: A0A0V0IK43_SOLCH (Chlorophyll a-b binding protein, chloroplastic OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-25
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKD  AFEELKVKEIKNGRLAMVAWLGFY QAALTGKGPVQNLL+HI
Sbjct: 92  NYPGGVLFDPLNLSKDPMAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLLEHI 151

Query: 62  ADP 121
           +DP
Sbjct: 152 SDP 154

Query: 122  181
           
Sbjct: 212  154

Query: 182  191
           
Sbjct: 272  154

[Close]
BLAST of CU117898 vs. NCBI nr
Match: gi|449455655|ref|XP_004145567.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-28
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKDA AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI
Sbjct: 261 NYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 320

Query: 62  ADP 121
           ADP
Sbjct: 321 ADP 323

Query: 122  181
           
Sbjct: 381  323

Query: 182  191
           
Sbjct: 441  323

[Close]
BLAST of CU117898 vs. NCBI nr
Match: gi|778697301|ref|XP_011654292.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-28
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKDA AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI
Sbjct: 212 NYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 271

Query: 62  ADP 121
           ADP
Sbjct: 272 ADP 274

Query: 122  181
           
Sbjct: 332  274

Query: 182  191
           
Sbjct: 392  274

[Close]
BLAST of CU117898 vs. NCBI nr
Match: gi|700200392|gb|KGN55550.1| (hypothetical protein Csa_4G664570 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 8.9e-28
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKDA AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI
Sbjct: 197 NYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 256

Query: 62  ADP 121
           ADP
Sbjct: 257 ADP 259

Query: 122  181
           
Sbjct: 317  259

Query: 182  191
           
Sbjct: 377  259

[Close]
BLAST of CU117898 vs. NCBI nr
Match: gi|659105213|ref|XP_008453033.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKDA AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI
Sbjct: 221 NYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 280

Query: 62  ADP 121
           +DP
Sbjct: 281 SDP 283

Query: 122  181
           
Sbjct: 341  283

Query: 182  191
           
Sbjct: 401  283

[Close]
BLAST of CU117898 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 2 

Query: 2   NYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 61
           NYPGGVLFDPLNLSKDA AFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI
Sbjct: 270 NYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHI 329

Query: 62  ADP 121
           +DP
Sbjct: 330 SDP 332

Query: 122  181
           
Sbjct: 390  332

Query: 182  191
           
Sbjct: 450  332

The following BLAST results are available for this feature:
BLAST of CU117898 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB21_LEMGI4.9e-1870.97Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE... [more]
CB23_TOBAC4.9e-1869.35Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 ... [more]
CB22_HORVU6.4e-1870.97Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3... [more]
CB25_SOLLC6.4e-1870.97Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersi... [more]
CB26_PETSP6.4e-1869.35Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 S... [more]
BLAST of CU117898 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0U5_CUCSA3.1e-2798.41Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G66457... [more]
A0A061EWX0_THECC1.7e-2592.06Chlorophyll a-b binding protein, chloroplastic OS=Theobroma cacao GN=TCM_024723 ... [more]
W9QWP9_9ROSA2.9e-2588.89Chlorophyll a-b binding protein, chloroplastic OS=Morus notabilis GN=L484_024786... [more]
C6TAC2_SOYBN4.9e-2590.48Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_17G262400... [more]
A0A0V0IK43_SOLCH4.9e-2592.06Chlorophyll a-b binding protein, chloroplastic OS=Solanum chacoense PE=3 SV=1[more]
BLAST of CU117898 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455655|ref|XP_004145567.1|8.9e-2898.41PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X1 [Cucu... [more]
gi|778697301|ref|XP_011654292.1|8.9e-2898.41PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucu... [more]
gi|700200392|gb|KGN55550.1|8.9e-2898.41hypothetical protein Csa_4G664570 [Cucumis sativus][more]
gi|659105213|ref|XP_008453033.1|2.0e-2796.83PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis m... [more]
gi|659105211|ref|XP_008453032.1|2.0e-2796.83PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m... [more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
cellular_component GO:0016020 membrane
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G664570Csa4G664570gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02KS6NXFKNP3UI02KS6NXEST
FKNP3UI02OM2F9FKNP3UI02OM2F9EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 2..79
score: 6.2
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 2..46
score: 1.2
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 2..71
score: 1.7
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 3..74
score: 3.27
NoneNo IPR availablePANTHERPTHR21649:SF24CHLOROPHYLL A-B BINDING FAMILY PROTEINcoord: 2..79
score: 6.2