CU117873 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU117873
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationChr2 : 12528568 .. 12528769 (-)
Sequence length203
The following sequences are available for this feature:

transcribed_cluster sequence

GGAAATCAGGTTGGTTGTGTAGTGTTTTTGTTGGGAGTGCGATTGTTGATATGTATGCAAAAAATTACTTTTGATTTATGATGCCGTTGAAGTGTTTGATGAAATGCCCATGAAGAATACTGTGTGTGCAAATGCATTGCTGGCTGGGTATGGCGAGGCTAGGATGTGGGTTGAAGGACTTGAATTGCTACGGAAGATGCAGG
BLAST of CU117873 vs. TrEMBL
Match: A0A0A0LLD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query: 71  LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 130
           LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ
Sbjct: 161 LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 204

Query: 131 190
           
Sbjct: 221 204

Query: 191 203
           
Sbjct: 281 204

BLAST of CU117873 vs. TrEMBL
Match: A0A0A0LLD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258600 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.2e-03
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3

Query: 3   KSGWLCSVFVGSAIVDMYAKN 62
           KSGWLCSVFVGSAIVDMYAKN
Sbjct: 139 KSGWLCSVFVGSAIVDMYAKN 159

Query: 63  66
           
Sbjct: 199 159


HSP 2 Score: 75.5 bits (184), Expect = 2.8e-11
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 2

Query: 62  KLLLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 121
           KL LI DA  VFDE+P+KNTVCANALL+GYGEA++WVEGL+ +RKM+
Sbjct: 57  KLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMR 103

Query: 122 181
           
Sbjct: 117 103

Query: 182 203
           
Sbjct: 177 103

BLAST of CU117873 vs. TrEMBL
Match: D7U5E6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01070 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 7.6e-01
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query: 3  KSGWLCSVFVGSAIVDMYAK 62
          KSGWL SVFVGSA+VDMYAK
Sbjct: 38 KSGWLSSVFVGSALVDMYAK 57


HSP 2 Score: 70.5 bits (171), Expect = 8.9e-10
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 2

Query: 68  LLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKM 127
           LLI DA   F E+PMKN+VCANALLAGYGEA++W++G+ELLRKM
Sbjct: 163 LLIDDAEIAFHEIPMKNSVCANALLAGYGEAKLWIKGIELLRKM 206

Query: 128 187
           
Sbjct: 223 206

Query: 188 200
           
Sbjct: 283 206

BLAST of CU117873 vs. TrEMBL
Match: A0A0K9R2F1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114500 PE=4 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 1.7e+03
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 3

Query: 3   KSGWLCSVFVGSAIVDMYAKN 62
           K+GW  SVF GSA+V +Y+++
Sbjct: 142 KAGWSGSVFAGSAVVGLYSRS 162

Query: 63  66
           
Sbjct: 202 162


HSP 2 Score: 68.6 bits (166), Expect = 3.4e-09
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 2

Query: 62  KLLLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 121
           KLLLI DA  +FDE+P+KNT C NALL+GYGEA+MW EGL+L++ M+
Sbjct: 26  KLLLINDAASLFDEIPVKNTWCVNALLSGYGEAKMWGEGLKLVQGMR 72

Query: 122 181
           
Sbjct: 86  72

Query: 182 203
           
Sbjct: 146 72

BLAST of CU117873 vs. TrEMBL
Match: V4SD86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030191mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.6e-09
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 2

Query: 62  KLLLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKM 121
           KLLLI+DA  +FDE+P+KN+VCANALL+GY EA++W  GLEL+R M
Sbjct: 57  KLLLIHDAELMFDEIPVKNSVCANALLSGYCEAKLWAGGLELVRLM 102

Query: 122 181
           
Sbjct: 117 102

Query: 182 200
           
Sbjct: 177 102

BLAST of CU117873 vs. NCBI nr
Match: gi|659115574|ref|XP_008457622.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query: 71  LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 130
           LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ
Sbjct: 161 LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 204

Query: 131 190
           
Sbjct: 221 204

Query: 191 203
           
Sbjct: 281 204

BLAST of CU117873 vs. NCBI nr
Match: gi|449458644|ref|XP_004147057.1| (PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2

Query: 71  LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 130
           LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ
Sbjct: 161 LIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 204

Query: 131 190
           
Sbjct: 221 204

Query: 191 203
           
Sbjct: 281 204

BLAST of CU117873 vs. NCBI nr
Match: gi|297744703|emb|CBI37965.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 2

Query: 62  KLLLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 121
           KL LI DA  VFDE+P+KNTVCANALL+GYGEA++WVEGL+ +RKM+
Sbjct: 57  KLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMR 103

Query: 122 181
           
Sbjct: 117 103

Query: 182 203
           
Sbjct: 177 103

BLAST of CU117873 vs. NCBI nr
Match: gi|731383046|ref|XP_010647512.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1 [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 2

Query: 62  KLLLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQ 121
           KL LI DA  VFDE+P+KNTVCANALL+GYGEA++WVEGL+ +RKM+
Sbjct: 162 KLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMR 208

Query: 122 181
           
Sbjct: 222 208

Query: 182 203
           
Sbjct: 282 208

BLAST of CU117873 vs. NCBI nr
Match: gi|1009149489|ref|XP_015892506.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Ziziphus jujuba])

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-11
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2

Query: 62  KLLLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKM 121
           K LLI +A  VFDE+P++NTVCANALL+GYGEA+MW+EGLEL RKM
Sbjct: 188 KSLLIRNAEVVFDELPIRNTVCANALLSGYGEAKMWIEGLELSRKM 233

Query: 122 181
           
Sbjct: 248 233

Query: 182 200
           
Sbjct: 308 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LLD6_CUCSA2.2e-16100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258600 PE=4 SV=1[more]
A0A0A0LLD6_CUCSA6.2e-03100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258600 PE=4 SV=1[more]
D7U5E6_VITVI7.6e-0190.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01070 PE=4 SV=... [more]
A0A0K9R2F1_SPIOL1.7e+0352.38Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114500 PE=4 SV=1[more]
V4SD86_9ROSI7.6e-0967.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030191mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659115574|ref|XP_008457622.1|1.4e-16100.00PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m... [more]
gi|449458644|ref|XP_004147057.1|1.4e-16100.00PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like ... [more]
gi|297744703|emb|CBI37965.3|1.8e-1172.34unnamed protein product [Vitis vinifera][more]
gi|731383046|ref|XP_010647512.1|1.8e-1172.34PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like isoform X1... [more]
gi|1009149489|ref|XP_015892506.1|5.2e-1173.91PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Ziziphus ... [more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa2G258600Csa2G258600gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0001740H0001740EST
H0007852H0007852EST
H0009325H0009325EST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 6..31
score: 1.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..31
score: 1.8
NoneNo IPR availablePANTHERPTHR24015:SF839SUBFAMILY NOT NAMEDcoord: 2..31
score: 1.8